TargetScan_205 megaCluster: 1 Residual: 0.21 | Macrophage Network Portal

Summary

Title	Cluster	Residual	Bicluster Conditions	Residual Permutation P-Value	Var. Exp. First PC	Var. Exp. First PC Perm. P-Value
TargetScan_205	1	0.21	15	0	0.916215	0

Members

Displaying 1 - 34 of 34

627939 ribosomal protein L21 pseudogene Details for - - ribosomal protein L21 pseudogene GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 627939 Tuberculist Genomic Region	72747 tetratricopeptide repeat domain 39C Details for - - tetratricopeptide repeat domain 39C GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 72747 Tuberculist Genomic Region
105203 predicted gene, 20114 Details for - - predicted gene, 20114 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 100504211 Tuberculist Genomic Region	12457 cDNA sequence BC016423 Details for - - cDNA sequence BC016423 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 105203 Tuberculist Genomic Region
14102 CCR4 carbon catabolite repression 4-like (S. cerevisiae) Details for - - CCR4 carbon catabolite repression 4-like (S. cerevisiae) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 12457 Tuberculist Genomic Region	14706 Fas (TNF receptor superfamily member 6) Details for - - Fas (TNF receptor superfamily member 6) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 14102 Tuberculist Genomic Region
15273 guanine nucleotide binding protein (G protein), gamma 4 Details for - - guanine nucleotide binding protein (G protein), gamma 4 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 14706 Tuberculist Genomic Region	15368 human immunodeficiency virus type I enhancer binding protein 2 Details for - - human immunodeficiency virus type I enhancer binding protein 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 15273 Tuberculist Genomic Region
17133 heme oxygenase (decycling) 1 Details for - - heme oxygenase (decycling) 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 15368 Tuberculist Genomic Region	17750 v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian) Details for - - v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 17133 Tuberculist Genomic Region
18033 metallothionein 2 Details for - - metallothionein 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 17750 Tuberculist Genomic Region	18413 nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105 Details for - - nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 18033 Tuberculist Genomic Region
19386 oncostatin M Details for RP23-453B22.1 - oncostatin M GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 18413 Tuberculist Genomic Region	20448 RAN binding protein 2 Details for - - RAN binding protein 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 19386 Tuberculist Genomic Region
20698 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4 Details for RP23-17P12.1 - ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 20448 Tuberculist Genomic Region	208647 sphingosine kinase 1 Details for RP23-193A16.4 - sphingosine kinase 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 20698 Tuberculist Genomic Region
239273 cAMP responsive element binding protein 3-like 2 Details for - - cAMP responsive element binding protein 3-like 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 208647 Tuberculist Genomic Region	27279 ATP-binding cassette, sub-family C (CFTR/MRP), member 4 Details for - - ATP-binding cassette, sub-family C (CFTR/MRP), member 4 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 239273 Tuberculist Genomic Region
333639 tumor necrosis factor receptor superfamily, member 12a Details for - - tumor necrosis factor receptor superfamily, member 12a GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 27279 Tuberculist Genomic Region	382000 mastermind-like domain containing 1 Details for - - mastermind-like domain containing 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 333639 Tuberculist Genomic Region
50772 cDNA sequence AY761184 Details for - - cDNA sequence AY761184 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 382000 Tuberculist Genomic Region	57349 mitogen-activated protein kinase 6 Details for - - mitogen-activated protein kinase 6 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 50772 Tuberculist Genomic Region
58250 pro-platelet basic protein Details for - - pro-platelet basic protein GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 57349 Tuberculist Genomic Region	66282 carbohydrate sulfotransferase 11 Details for - - carbohydrate sulfotransferase 11 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 58250 Tuberculist Genomic Region
66598 translation machinery associated 16 homolog (S. cerevisiae) Details for - - translation machinery associated 16 homolog (S. cerevisiae) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 66282 Tuberculist Genomic Region	67876 RIKEN cDNA 3110001I22 gene Details for - - RIKEN cDNA 3110001I22 gene GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 66598 Tuberculist Genomic Region
70686 coenzyme Q10 homolog B (S. cerevisiae) Details for - - coenzyme Q10 homolog B (S. cerevisiae) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 67876 Tuberculist Genomic Region	72054 dual specificity phosphatase 16 Details for - - dual specificity phosphatase 16 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 70686 Tuberculist Genomic Region
723909 cytochrome P450, family 4, subfamily f, polypeptide 18 Details for - - cytochrome P450, family 4, subfamily f, polypeptide 18 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 72054 Tuberculist Genomic Region	72536 microRNA 342 Details for - - microRNA 342 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 723909 Tuberculist Genomic Region
99929 T cell activation Rho GTPase activating protein Details for - - T cell activation Rho GTPase activating protein GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 72536 Tuberculist Genomic Region	381290 TCDD-inducible poly(ADP-ribose) polymerase Details for - - TCDD-inducible poly(ADP-ribose) polymerase GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 99929 Tuberculist Genomic Region
108078 ATPase, Ca++ transporting, plasma membrane 4 Details for - - ATPase, Ca++ transporting, plasma membrane 4 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 381290 Tuberculist Genomic Region	Details for - - oxidized low density lipoprotein (lectin-like) receptor 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 108078 Tuberculist Genomic Region

TFBS DB TF

TFs	percTargets	pValue
V_HOXA6_01_M01392	0.233333	0.000000000702

GO Terms

Displaying 1 - 1 of 1

GO Terms
NA

Upstream MEME Motif

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif2 E-Value	Motif2 Consensus	Motif2 Matches
0.071	RGGGGTGGGRGG	V$SP1_02_M01303, V$MAZ_Q6_01_M02023, V$SP1_Q2_01_M00933, V$CKROX_Q2_M01175, V$FKLF_Q5_M01837, V$ZFP281_04_M02831, V$CACBINDINGPROTEIN_Q6_M00720, V$ZNF219_01_M01122, V$ZFP281_01_M01597, V$MAZ_Q6_M00649, V$SP4_Q5_M01273, V$SP1_Q4_01_M00932, V$SP1_Q6_01_M00931, V$SP1_Q6_M00196, V$UF1H3BETA_Q6_M01068, V$CACD_01_M01113, V$BCL6B_04_M02844, V$SP1_03_M02281, V$ZBP89_Q4_M01816, V$ZNF515_01_M01231, V$GLI3_Q5_01_M01657, V$KROX_Q6_M00982, V$ZFP410_04_M02936, V$EGR2_Q6_M02092, V$MAZR_01_M00491, V$EKLF_Q5_M01874, V$ZFP740_03_M02834, V$NFE4_Q5_M02105, V$KLF15_Q2_M01714, V$EGR1_06_M02744, V$PAX4_03_M00378, V$NGFIC_01_M00244, V$EGR1_Q6_M01873, V$IK_Q5_M01169, V$EGR1_02_M01972, Zfp281.2, Bcl6b.2, Zfp410.1, Zfp740.1, Egr1.1, Sp4.1, Zif268.1, Klf7.1, Sox13.2, Smad3.1	1500	TTNTTCTGTKT	NA

Upstream Weeder Motif

Motif1 Score	Motif1 Consensus	Motif1 Matches	Motif2 Score	Motif2 Consensus	Motif2 Matches
1.2	CGCGAC	Zfp161.2, Max.2	1.3	ACGCGACC	NA

3p UTR Weeder

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif1 Model	Motif2 E-Value	Motif2 Consensus	Motif2 Matches	Motif2 Model
0.62	GATGCNAC	NA	NA		NA	NA	NA

3p UTR PITA

miRNAs	percTargets	pValue
NA

3p UTR TargetScan

miRNAs	percTargets	pValue
NA

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