TargetScan_206 megaCluster: 11 Residual: 0.25

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
TargetScan_206 11 0.25 14 0 0.844326 0

Members

Displaying 1 - 29 of 29
14245 lipin 1

Details for - - lipin 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14245

Tuberculist Genomic Region

15199 heme binding protein 1

Details for - - heme binding protein 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 15199

Tuberculist Genomic Region

66880 arginine/serine-rich coiled-coil 1

Details for - - arginine/serine-rich coiled-coil 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66880

Tuberculist Genomic Region

74600 mitochondrial ribosomal protein L47

Details for - - mitochondrial ribosomal protein L47

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74600

Tuberculist Genomic Region

100036521 predicted gene 16039

Details for - - predicted gene 16039

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100036521

Tuberculist Genomic Region

107747 aldehyde dehydrogenase 1 family, member L1

Details for - - aldehyde dehydrogenase 1 family, member L1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 107747

Tuberculist Genomic Region

107823 Wolf-Hirschhorn syndrome candidate 1 (human)

Details for - - Wolf-Hirschhorn syndrome candidate 1 (human)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 107823

Tuberculist Genomic Region

11907 arginyltransferase 1

Details for - - arginyltransferase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 11907

Tuberculist Genomic Region

14228 FK506 binding protein 4

Details for - - FK506 binding protein 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14228

Tuberculist Genomic Region

15182 histone deacetylase 2

Details for - - histone deacetylase 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 15182

Tuberculist Genomic Region

15446 hydroxyprostaglandin dehydrogenase 15 (NAD)

Details for - - hydroxyprostaglandin dehydrogenase 15 (NAD)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 15446

Tuberculist Genomic Region

16553 kinesin family member 13A

Details for - - kinesin family member 13A

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16553

Tuberculist Genomic Region

16774 laminin, alpha 3

Details for - - laminin, alpha 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16774

Tuberculist Genomic Region

18639 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1

Details for RP23-338A17.2 - 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 18639

Tuberculist Genomic Region

19075 DNA primase, p49 subunit

Details for - - DNA primase, p49 subunit

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 19075

Tuberculist Genomic Region

20937 suppressor of variegation 3-9 homolog 1 (Drosophila)

Details for RP23-27I6.1 - suppressor of variegation 3-9 homolog 1 (Drosophila)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20937

Tuberculist Genomic Region

209416 G patch domain and KOW motifs

Details for RP23-109E24.1 - G patch domain and KOW motifs

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 209416

Tuberculist Genomic Region

216724 RUN and FYVE domain containing 1

Details for RP23-121P11.2 - RUN and FYVE domain containing 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 216724

Tuberculist Genomic Region

21917 thymopoietin

Details for - - thymopoietin

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 21917

Tuberculist Genomic Region

225115 supervillin

Details for - - supervillin

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 225115

Tuberculist Genomic Region

245688 retinoblastoma binding protein 7

Details for RP23-436I3.1 - retinoblastoma binding protein 7

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 245688

Tuberculist Genomic Region

57423 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F2

Details for - - ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 57423

Tuberculist Genomic Region

66578 MIS18 kinetochore protein homolog A (S. pombe)

Details for - - MIS18 kinetochore protein homolog A (S. pombe)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66578

Tuberculist Genomic Region

66911 nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1

Details for - - nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66911

Tuberculist Genomic Region

68183 breast carcinoma amplified sequence 2

Details for - - breast carcinoma amplified sequence 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68183

Tuberculist Genomic Region

71706 solute carrier family 46, member 3

Details for - - solute carrier family 46, member 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 71706

Tuberculist Genomic Region

73327 protease-associated domain containing 1

Details for - - protease-associated domain containing 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 73327

Tuberculist Genomic Region

80905 polymerase (DNA directed), eta (RAD 30 related)

Details for - - polymerase (DNA directed), eta (RAD 30 related)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 80905

Tuberculist Genomic Region

94181 N-acetylneuraminic acid synthase (sialic acid synthase)

Details for RP23-117B19.4 - N-acetylneuraminic acid synthase (sialic acid synthase)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 94181

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
BARHL2_homeodomain_full_monomeric_10_1 0.107143 0.0000499

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
0.00023 TTWTTANTTWT NA 230 YTTGCWKTTCT NA

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
1.32 TGCGCC NA 1.26 CNCGGCGC Zfp161.2, E2F2.2, E2F3.2

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.48 ACTAGT NA NA 0.81 ATGAAACC NA NA

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
NA

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