TargetScan_216 megaCluster: 8 Residual: 0.15

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
TargetScan_216 8 0.15 15 0 0.959626 0

Members

Displaying 1 - 31 of 31
108735 SFT2 domain containing 2

Details for - - SFT2 domain containing 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 108735

Tuberculist Genomic Region

11364 acyl-Coenzyme A dehydrogenase, medium chain

Details for - - acyl-Coenzyme A dehydrogenase, medium chain

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 11364

Tuberculist Genomic Region

170718 isocitrate dehydrogenase 3 (NAD+) beta

Details for RP23-20A6.5 - isocitrate dehydrogenase 3 (NAD+) beta

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 170718

Tuberculist Genomic Region

57320 Parkinson disease (autosomal recessive, early onset) 7

Details for RP23-272N19.5 - Parkinson disease (autosomal recessive, early onset) 7

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 57320

Tuberculist Genomic Region

84505 SET domain, bifurcated 1

Details for - - SET domain, bifurcated 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 84505

Tuberculist Genomic Region

103140 glutathione S-transferase, theta 3

Details for - - glutathione S-transferase, theta 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 103140

Tuberculist Genomic Region

105352 dual specificity phosphatase 22

Details for RP23-217J3.1 - dual specificity phosphatase 22

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 105352

Tuberculist Genomic Region

110639 phosphoribosyl pyrophosphate synthetase 2

Details for RP23-139P21.4 - phosphoribosyl pyrophosphate synthetase 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 110639

Tuberculist Genomic Region

11764 adaptor protein complex AP-1, beta 1 subunit

Details for RP23-64E17.3 - adaptor protein complex AP-1, beta 1 subunit

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 11764

Tuberculist Genomic Region

12846 catechol-O-methyltransferase

Details for - - catechol-O-methyltransferase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12846

Tuberculist Genomic Region

14697 guanine nucleotide binding protein (G protein), beta 5

Details for - - guanine nucleotide binding protein (G protein), beta 5

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14697

Tuberculist Genomic Region

14712 glyceronephosphate O-acyltransferase

Details for - - glyceronephosphate O-acyltransferase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14712

Tuberculist Genomic Region

16579 kinesin-associated protein 3

Details for - - kinesin-associated protein 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16579

Tuberculist Genomic Region

170936 zinc finger protein 369

Details for - - zinc finger protein 369

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 170936

Tuberculist Genomic Region

17692 male-specific lethal 3 homolog (Drosophila)

Details for RP23-125I7.1 - male-specific lethal 3 homolog (Drosophila)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17692

Tuberculist Genomic Region

18749 protein kinase, cAMP dependent, catalytic, beta

Details for - - protein kinase, cAMP dependent, catalytic, beta

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 18749

Tuberculist Genomic Region

19691 RecQ protein-like

Details for - - RecQ protein-like

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 19691

Tuberculist Genomic Region

213056 family with sequence similarity 126, member B

Details for - - family with sequence similarity 126, member B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 213056

Tuberculist Genomic Region

227059 solute carrier family 39 (zinc transporter), member 10

Details for - - solute carrier family 39 (zinc transporter), member 10

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 227059

Tuberculist Genomic Region

23874 phenylalanyl-tRNA synthetase, beta subunit

Details for - - phenylalanyl-tRNA synthetase, beta subunit

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 23874

Tuberculist Genomic Region

54636 WD repeat domain 45

Details for RP23-109E24.3 - WD repeat domain 45

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 54636

Tuberculist Genomic Region

666938 BEN domain containing 4

Details for - - BEN domain containing 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 666938

Tuberculist Genomic Region

68058 chromodomain helicase DNA binding protein 1-like

Details for - - chromodomain helicase DNA binding protein 1-like

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68058

Tuberculist Genomic Region

68729 tripartite motif-containing 37

Details for RP23-475B18.1 - tripartite motif-containing 37

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68729

Tuberculist Genomic Region

69786 Tp53rk binding protein

Details for - - Tp53rk binding protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 69786

Tuberculist Genomic Region

70223 asparaginyl-tRNA synthetase

Details for - - asparaginyl-tRNA synthetase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 70223

Tuberculist Genomic Region

71151 exoribonuclease 2

Details for - - exoribonuclease 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 71151

Tuberculist Genomic Region

71449 methyltransferase like 13

Details for - - methyltransferase like 13

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 71449

Tuberculist Genomic Region

76491 abhydrolase domain containing 14b

Details for - - abhydrolase domain containing 14b

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 76491

Tuberculist Genomic Region

94219 cyclin M2

Details for - - cyclin M2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 94219

Tuberculist Genomic Region

227154 STE20-related kinase adaptor beta

Details for - - STE20-related kinase adaptor beta

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 227154

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
V_SP1_Q4_01_M00932 1 0

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
2.3 AANAAGAAYAA NA 0.16 GCNMCGCCTCCC V$SP1_Q6_M00196, V$FPM315_01_M01587, V$SP1_Q4_01_M00932, V$GC_01_M00255, V$SP1_03_M02281, V$SP1SP3_Q4_M01219, V$SP4_03_M02810, Sp4.1

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
1.36 CGTCCG MIZF_MA0131.1, V$MIZF_01_M01182 1.38 CCNCGCGC NA

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.58 TCGCCG NA NA 0.67 GCATACCG NA NA

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
mmu-miR-1932 0.142857 0.0000358

Add comment

Log in or register to post comments