TargetScan_222 megaCluster: 11 Residual: 0.21

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
TargetScan_222 11 0.21 9 0 0.681953 0.813

Members

Displaying 1 - 38 of 38
231329 polymerase (RNA) II (DNA directed) polypeptide B

Details for - - polymerase (RNA) II (DNA directed) polypeptide B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 231329

Tuberculist Genomic Region

67075 magnesium transporter 1

Details for RP23-186F4.1 - magnesium transporter 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67075

Tuberculist Genomic Region

71878 family with sequence similarity 83, member D

Details for RP23-119H5.1 - family with sequence similarity 83, member D

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 71878

Tuberculist Genomic Region

104725 serine palmitoyltransferase, small subunit A

Details for - - serine palmitoyltransferase, small subunit A

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 104725

Tuberculist Genomic Region

106795 transcription factor 19

Details for - - transcription factor 19

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 106795

Tuberculist Genomic Region

109242 kinesin family member 24

Details for RP23-328E6.6 - kinesin family member 24

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 109242

Tuberculist Genomic Region

14360 Fyn proto-oncogene

Details for - - Fyn proto-oncogene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14360

Tuberculist Genomic Region

14635 galactokinase 1

Details for RP23-42F6.2 - galactokinase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14635

Tuberculist Genomic Region

17308 mannoside acetylglucosaminyltransferase 1

Details for RP23-10M12.1 - mannoside acetylglucosaminyltransferase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17308

Tuberculist Genomic Region

18472 platelet-activating factor acetylhydrolase, isoform 1b, subunit 1

Details for RP23-194P5.2 - platelet-activating factor acetylhydrolase, isoform 1b, subunit 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 18472

Tuberculist Genomic Region

217216 cDNA sequence BC030867

Details for RP23-461C4.3 - cDNA sequence BC030867

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 217216

Tuberculist Genomic Region

217653 MIS18 binding protein 1

Details for - - MIS18 binding protein 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 217653

Tuberculist Genomic Region

217830 RIKEN cDNA 9030617O03 gene

Details for - - RIKEN cDNA 9030617O03 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 217830

Tuberculist Genomic Region

218639 ADP-ribosylation factor-like 15

Details for - - ADP-ribosylation factor-like 15

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 218639

Tuberculist Genomic Region

233406 protein regulator of cytokinesis 1

Details for - - protein regulator of cytokinesis 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 233406

Tuberculist Genomic Region

26382 FYVE, RhoGEF and PH domain containing 2

Details for - - FYVE, RhoGEF and PH domain containing 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 26382

Tuberculist Genomic Region

27027 tetraspanin 32

Details for - - tetraspanin 32

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 27027

Tuberculist Genomic Region

271697 cyclin-dependent kinase 15

Details for - - cyclin-dependent kinase 15

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 271697

Tuberculist Genomic Region

28113 Terf1 (TRF1)-interacting nuclear factor 2

Details for - - Terf1 (TRF1)-interacting nuclear factor 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 28113

Tuberculist Genomic Region

53332 myotubularin related protein 1

Details for RP23-125F4.1 - myotubularin related protein 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 53332

Tuberculist Genomic Region

56473 fatty acid desaturase 2

Details for - - fatty acid desaturase 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56473

Tuberculist Genomic Region

56541 hyaluronic acid binding protein 4

Details for - - hyaluronic acid binding protein 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56541

Tuberculist Genomic Region

63913 family with sequence similarity 129, member A

Details for - - family with sequence similarity 129, member A

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 63913

Tuberculist Genomic Region

68137 KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1

Details for - - KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68137

Tuberculist Genomic Region

68549 shugoshin-like 2 (S. pombe)

Details for - - shugoshin-like 2 (S. pombe)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68549

Tuberculist Genomic Region

68879 PRP6 pre-mRNA splicing factor 6 homolog (yeast)

Details for RP23-138J20.4 - PRP6 pre-mRNA splicing factor 6 homolog (yeast)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68879

Tuberculist Genomic Region

72749 tonsoku-like, DNA repair protein

Details for - - tonsoku-like, DNA repair protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 72749

Tuberculist Genomic Region

74131 SAM and SH3 domain containing 3

Details for RP23-351G20.2 - SAM and SH3 domain containing 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74131

Tuberculist Genomic Region

76429 phospholysine phosphohistidine inorganic pyrophosphate phosphatase

Details for - - phospholysine phosphohistidine inorganic pyrophosphate phosphatase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 76429

Tuberculist Genomic Region

76464 cancer susceptibility candidate 5

Details for RP23-15I21.2 - cancer susceptibility candidate 5

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 76464

Tuberculist Genomic Region

76915 meiotic nuclear divisions 1 homolog (S. cerevisiae)

Details for - - meiotic nuclear divisions 1 homolog (S. cerevisiae)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 76915

Tuberculist Genomic Region

76936 heterogeneous nuclear ribonucleoprotein M

Details for RP24-225N8.1 - heterogeneous nuclear ribonucleoprotein M

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 76936

Tuberculist Genomic Region

77011 TOPBP1-interacting checkpoint and replication regulator

Details for - - TOPBP1-interacting checkpoint and replication regulator

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 77011

Tuberculist Genomic Region

99138 START domain containing 7

Details for RP23-206D14.5 - START domain containing 7

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 99138

Tuberculist Genomic Region

18749 protein kinase, cAMP dependent, catalytic, beta

Details for - - protein kinase, cAMP dependent, catalytic, beta

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 18749

Tuberculist Genomic Region

20460 Scl/Tal1 interrupting locus

Details for RP23-295C20.5 - Scl/Tal1 interrupting locus

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20460

Tuberculist Genomic Region

75216 centrosomal protein 128

Details for - - centrosomal protein 128

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 75216

Tuberculist Genomic Region

12846 catechol-O-methyltransferase

Details for - - catechol-O-methyltransferase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12846

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
FOXJ2_forkhead_DBD_dimeric_13_1 0.210526 0.0000071

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
0.00000000092 AAANAARANAAA NA 45000 RGCCAATGAGMR NFYA_MA0060.1, V$NFYA_Q5_M02106, V$NFY_01_M00287, V$NFYC_Q5_M02107, V$ALPHACP1_01_M00687, V$NFY_Q6_M00185, V$NFY_Q6_01_M00775, V$CAAT_01_M00254, V$NFY_C_M00209, V$IPF1_02_M01234

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
1.15 GCGGGA V$SP2_01_M01783, V$E2F4_Q6_M02090 1.2 GCGCGAGA NA

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.52 ANGACTCN NA NA NA NA NA

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
NA

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