TargetScan_26 megaCluster: 7 Residual: 0.45

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
TargetScan_26 7 0.45 11 0.039 0.603969 0.999

Members

Displaying 1 - 29 of 29
100561 predicted gene, 19912

Details for - - predicted gene, 19912

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100503821

Tuberculist Genomic Region

107747 solute carrier family 15, member 4

Details for - - solute carrier family 15, member 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100561

Tuberculist Genomic Region

114893 aldehyde dehydrogenase 1 family, member L1

Details for - - aldehyde dehydrogenase 1 family, member L1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 107747

Tuberculist Genomic Region

12772 DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)

Details for - - DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 114893

Tuberculist Genomic Region

19331 chemokine (C-C motif) receptor 2

Details for - - chemokine (C-C motif) receptor 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12772

Tuberculist Genomic Region

194126 RAB19, member RAS oncogene family

Details for - - RAB19, member RAS oncogene family

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 19331

Tuberculist Genomic Region

195046 myotubularin related protein 11

Details for - - myotubularin related protein 11

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 194126

Tuberculist Genomic Region

212627 NLR family, pyrin domain containing 1A

Details for DN-393H17.9 - NLR family, pyrin domain containing 1A

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 195046

Tuberculist Genomic Region

213081 phosphoribosyl pyrophosphate synthetase-associated protein 2

Details for RP23-278F12.1 - phosphoribosyl pyrophosphate synthetase-associated protein 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 212627

Tuberculist Genomic Region

22235 WD repeat domain 19

Details for - - WD repeat domain 19

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 213081

Tuberculist Genomic Region

225058 UDP-glucose dehydrogenase

Details for - - UDP-glucose dehydrogenase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 22235

Tuberculist Genomic Region

26442 predicted gene 4832

Details for - - predicted gene 4832

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 225058

Tuberculist Genomic Region

382423 proteasome (prosome, macropain) subunit, alpha type 5

Details for RP23-27B23.2 - proteasome (prosome, macropain) subunit, alpha type 5

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 26442

Tuberculist Genomic Region

54394 ataxin 7-like 3B

Details for - - ataxin 7-like 3B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 382423

Tuberculist Genomic Region

54601 cytokine receptor-like factor 3

Details for RP23-253E9.5 - cytokine receptor-like factor 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 54394

Tuberculist Genomic Region

613254 forkhead box O4

Details for RP23-356J7.2 - forkhead box O4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 54601

Tuberculist Genomic Region

66433 expressed sequence AA465934

Details for - - expressed sequence AA465934

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 613254

Tuberculist Genomic Region

67099 coiled-coil-helix-coiled-coil-helix domain containing 7

Details for RP23-24J10.4 - coiled-coil-helix-coiled-coil-helix domain containing 7

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66433

Tuberculist Genomic Region

67574 methyltransferase like 21A

Details for - - methyltransferase like 21A

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67099

Tuberculist Genomic Region

68118 asparagine-linked glycosylation 13

Details for RP23-159H8.5 - asparagine-linked glycosylation 13

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67574

Tuberculist Genomic Region

68618 RIKEN cDNA 9430023L20 gene

Details for - - RIKEN cDNA 9430023L20 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68118

Tuberculist Genomic Region

71599 RIKEN cDNA 1110012L19 gene

Details for RP23-403O11.1 - RIKEN cDNA 1110012L19 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68618

Tuberculist Genomic Region

71769 SUMO/sentrin specific peptidase 8

Details for - - SUMO/sentrin specific peptidase 8

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 71599

Tuberculist Genomic Region

72836 Bardet-Biedl syndrome 10 (human)

Details for - - Bardet-Biedl syndrome 10 (human)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 71769

Tuberculist Genomic Region

74192 protection of telomeres 1B

Details for - - protection of telomeres 1B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 72836

Tuberculist Genomic Region

76302 actin related protein 2/3 complex, subunit 5-like

Details for RP23-244N6.5 - actin related protein 2/3 complex, subunit 5-like

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74192

Tuberculist Genomic Region

83701 PEST proteolytic signal containing nuclear protein

Details for - - PEST proteolytic signal containing nuclear protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 76302

Tuberculist Genomic Region

97165 serrate RNA effector molecule homolog (Arabidopsis)

Details for - - serrate RNA effector molecule homolog (Arabidopsis)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 83701

Tuberculist Genomic Region

Details for - - high mobility group box 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 97165

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
NA

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
0.000023 TTTYNNTYTCTT NA 1700 TTRAAARAAAAA NA

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
1.23 TCCGCC Egr1.1, Bcl6b.2, Smad3.1 1.46 GCGGAAGT V$SPIC_02_M02077, V$SPIB_02_M02041, V$SPI1_03_M02078, V$EHF_03_M02052, V$SPIC_01_M02042, V$EHF_06_M02745, V$ERF_01_M01984, V$ELF4_01_M01979, V$SPIB_03_M02076, V$ELK1_06_M02059, V$ER81_02_M02065, V$CETS1_Q6_M01870, V$GADP_01_M01258, V$ETS_Q6_M00971, V$EHF_02_M01974, V$GABPA_Q4_M01660, V$PEA3_01_M01991, V$PEA3_02_M02066, V$GABPBETA_Q3_M01876, V$ETV3_02_M02068, V$ERM_01_M01992, V$ERG_01_M01752, V$SPI1_01_M01203, V$SPIB_01_M01204, V$NERF_01_M01976, V$ERG_03_M02062, V$ESE1_Q3_M01214, V$ESE1_01_M01977, V$ESE1_02_M02055, V$ETV3_01_M01990, V$ELF4_02_M02056, V$ELF5_03_M02057, V$CETS1_02_M02063, V$GABP_B_M00341, V$TEL1_01_M01993, V$TEL1_02_M02070, V$PU1_Q4_M01172, V$ELF_02_M02053, V$CETS2_01_M01989, V$ERM_02_M02069, V$FLI1_01_M02038, V$ELK1_02_M00025, V$NET_02_M02060, V$ELF5_02_M01980, V$PU1_Q6_M00658, V$PET1_01_M02037, V$ER71_02_M02067, V$SPI1_04_M02278, V$ERG_02_M01985, V$STAT1_02_M00492, V$ER71_01_M01988, V$ELF2_02_M02054, V$ERF_02_M02061, V$PET1_02_M02072, V$ELK1_05_M01981, V$GABPA_01_M02039, V$GABPA_02_M02074, V$PEA3_Q6_M00655, V$CETS2_02_M02064, V$FLI1_02_M02073, V$CETS1_01_M01986, V$ER81_01_M01987, V$SAP1A_02_M01983, V$NET_01_M01982, V$SAP1A_03_M02058, V$ELF1_01_M01975, V$FLI1_Q6_M01208, V$NRF2_01_M00108, V$SAP1A_01_M01167, Spic.1, Sfpi1.3, Ehf.2, Elf5.1, Etv1.1, Elf2.1, Elf3.3, Elf4.1, Elf3.2, Ehf.3, Elk3.1, Ets1.1, Gm5454.1, Etv5.1, Elk1.1, Etv6.1, ETV6_ETS_full_monomeric_10_1, SPIC_ETS_full_monomeric_14_1, SPIB_ETS_DBD_monomeric_14_1, ETV6_ETS_full_dimeric_15_1, SPI1_ETS_full_monomeric_14_1, ELF5_ETS_full_monomeric_11_1, ETV3_ETS_DBD_monomeric_10_1, ELK1_ETS_full_dimeric_17_1, ETV1_ETS_DBD_monomeric_10_1, ETV4_ETS_DBD_monomeric_10_1, FEV_ETS_DBD_monomeric_10_1, ERF_ETS_DBD_monomeric_10_1, EHF_ETS_full_monomeric_12_1, ETS1_ETS_full_dimeric_18_1, GABPA_ETS_full_monomeric_10_1, ELK1_ETS_full_monomeric_10_1, Elk3_ETS_DBD_monomeric_10_1, ERG_ETS_full_monomeric_10_1, ELK4_ETS_DBD_monomeric_10_1, ELF1_ETS_full_monomeric_12_1

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.54 TAAGTC NA NA 0.73 ATCGCKGT NA NA

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
NA

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