TargetScan_29 megaCluster: 4 Residual: 0.18

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
TargetScan_29 4 0.18 15 0 0.945679 0

Members

Displaying 1 - 30 of 30
108927 lipoma HMGIC fusion partner

Details for - - lipoma HMGIC fusion partner

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 108927

Tuberculist Genomic Region

109624 caldesmon 1

Details for - - caldesmon 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 109624

Tuberculist Genomic Region

11468 actin, gamma 2, smooth muscle, enteric

Details for - - actin, gamma 2, smooth muscle, enteric

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 11468

Tuberculist Genomic Region

11475 actin, alpha 2, smooth muscle, aorta

Details for - - actin, alpha 2, smooth muscle, aorta

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 11475

Tuberculist Genomic Region

14268 fibronectin 1

Details for - - fibronectin 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14268

Tuberculist Genomic Region

14314 follistatin-like 1

Details for - - follistatin-like 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14314

Tuberculist Genomic Region

14389 growth factor receptor bound protein 2-associated protein 2

Details for - - growth factor receptor bound protein 2-associated protein 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14389

Tuberculist Genomic Region

16007 cysteine rich protein 61

Details for - - cysteine rich protein 61

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16007

Tuberculist Genomic Region

17354 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10

Details for RP23-349H7.1 - myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17354

Tuberculist Genomic Region

20239 ataxin 2

Details for - - ataxin 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20239

Tuberculist Genomic Region

20317 serine (or cysteine) peptidase inhibitor, clade F, member 1

Details for RP23-384C18.1 - serine (or cysteine) peptidase inhibitor, clade F, member 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20317

Tuberculist Genomic Region

20321 ferric-chelate reductase 1

Details for - - ferric-chelate reductase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20321

Tuberculist Genomic Region

20692 secreted acidic cysteine rich glycoprotein

Details for RP23-465I4.1 - secreted acidic cysteine rich glycoprotein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20692

Tuberculist Genomic Region

210044 adenylate cyclase 2

Details for - - adenylate cyclase 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 210044

Tuberculist Genomic Region

223453 death-associated protein

Details for - - death-associated protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 223453

Tuberculist Genomic Region

223593 RIKEN cDNA E430025E21 gene

Details for - - RIKEN cDNA E430025E21 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 223593

Tuberculist Genomic Region

227331 GRB10 interacting GYF protein 2

Details for - - GRB10 interacting GYF protein 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 227331

Tuberculist Genomic Region

230598 nardilysin, N-arginine dibasic convertase, NRD convertase 1

Details for RP23-188A12.1 - nardilysin, N-arginine dibasic convertase, NRD convertase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 230598

Tuberculist Genomic Region

233871 ataxin 2-like

Details for - - ataxin 2-like

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 233871

Tuberculist Genomic Region

269799 C-type lectin domain family 4, member a1

Details for - - C-type lectin domain family 4, member a1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 269799

Tuberculist Genomic Region

29817 insulin-like growth factor binding protein 7

Details for - - insulin-like growth factor binding protein 7

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 29817

Tuberculist Genomic Region

54519 amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein

Details for RP23-114M13.3 - amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 54519

Tuberculist Genomic Region

54635 platelet-derived growth factor, C polypeptide

Details for - - platelet-derived growth factor, C polypeptide

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 54635

Tuberculist Genomic Region

57315 WD repeat domain 46

Details for - - WD repeat domain 46

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 57315

Tuberculist Genomic Region

67739 solute carrier family 48 (heme transporter), member 1

Details for - - solute carrier family 48 (heme transporter), member 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67739

Tuberculist Genomic Region

68724 ADP-ribosylation factor-like 8A

Details for - - ADP-ribosylation factor-like 8A

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68724

Tuberculist Genomic Region

68728 transformation related protein 53 inducible nuclear protein 2

Details for RP23-32O9.1 - transformation related protein 53 inducible nuclear protein 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68728

Tuberculist Genomic Region

69162 Sec31 homolog A (S. cerevisiae)

Details for - - Sec31 homolog A (S. cerevisiae)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 69162

Tuberculist Genomic Region

67267 ubiquinol-cytochrome c reductase complex assembly factor 2

Details for - - ubiquinol-cytochrome c reductase complex assembly factor 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67267

Tuberculist Genomic Region

12816 collagen, type XII, alpha 1

Details for - - collagen, type XII, alpha 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12816

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
TFAP4_bHLH_full_dimeric_10_1 0.266667 0.00000483

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
0.0000097 AAAAAAWAAAAA FOXJ2_forkhead_DBD_dimeric_14_1, FOXJ3_forkhead_DBD_dimeric_14_1 6400 TTNTTTCTCTCT NA

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
1.15 CGRCGG NA 1.12 CGTGGCGA NA

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.49 GAACCG NA NA 0.8 CCNACTAG NA NA

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
NA

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