TargetScan_41 megaCluster: 11 Residual: 0.14 | Macrophage Network Portal

Summary

Title	Cluster	Residual	Bicluster Conditions	Residual Permutation P-Value	Var. Exp. First PC	Var. Exp. First PC Perm. P-Value
TargetScan_41	11	0.14	15	0	0.961755	0

Members

Displaying 1 - 18 of 18

109778 biliverdin reductase A Details for RP23-26A12.2 - biliverdin reductase A GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 109778 Tuberculist Genomic Region	114663 inositol (myo)-1(or 4)-monophosphatase 2 Details for - - inositol (myo)-1(or 4)-monophosphatase 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 114663 Tuberculist Genomic Region
11532 alcohol dehydrogenase 5 (class III), chi polypeptide Details for - - alcohol dehydrogenase 5 (class III), chi polypeptide GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 11532 Tuberculist Genomic Region	12531 cell division cycle 25B Details for RP23-387C21.1 - cell division cycle 25B GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 12531 Tuberculist Genomic Region
14156 flap structure specific endonuclease 1 Details for - - flap structure specific endonuclease 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 14156 Tuberculist Genomic Region	16881 ligase I, DNA, ATP-dependent Details for - - ligase I, DNA, ATP-dependent GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 16881 Tuberculist Genomic Region
18634 peroxisomal biogenesis factor 7 Details for - - peroxisomal biogenesis factor 7 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 18634 Tuberculist Genomic Region	20014 ribophorin II Details for RP23-163J20.6 - ribophorin II GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 20014 Tuberculist Genomic Region
225745 HAUS augmin-like complex, subunit 1 Details for - - HAUS augmin-like complex, subunit 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 225745 Tuberculist Genomic Region	27398 mitochondrial ribosomal protein L2 Details for RP23-76I16.2 - mitochondrial ribosomal protein L2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 27398 Tuberculist Genomic Region
29870 G two S phase expressed protein 1 Details for - - G two S phase expressed protein 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 29870 Tuberculist Genomic Region	381306 cDNA sequence BC055324 Details for - - cDNA sequence BC055324 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 381306 Tuberculist Genomic Region
56150 MAD2 mitotic arrest deficient-like 1 Details for - - MAD2 mitotic arrest deficient-like 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 56150 Tuberculist Genomic Region	65098 zinc finger, AN1-type domain 6 Details for - - zinc finger, AN1-type domain 6 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 65098 Tuberculist Genomic Region
66455 canopy 4 homolog (zebrafish) Details for - - canopy 4 homolog (zebrafish) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 66455 Tuberculist Genomic Region	67141 F-box protein 5 Details for - - F-box protein 5 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 67141 Tuberculist Genomic Region
68275 replication protein A1 Details for RP23-113D4.1 - replication protein A1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 68275 Tuberculist Genomic Region	12544 cell division cycle 45 Details for - - cell division cycle 45 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 12544 Tuberculist Genomic Region

TFBS DB TF

TFs	percTargets	pValue
NA

GO Terms

Displaying 1 - 1 of 1

GO Terms
NA

Upstream MEME Motif

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif2 E-Value	Motif2 Consensus	Motif2 Matches
28	AAAATYAA	NA	30	GCCCCGCCCNC	SP1_MA0079.2, Klf4_MA0039.2, SP1_MA0079.1, V$SP1_Q6_01_M00931, V$SP1_Q6_M00196, V$SP1_Q2_01_M00933, V$SP1_Q4_01_M00932, V$GC_01_M00255, V$SP2_01_M01783, V$SP1_03_M02281, V$SP4_Q5_M01273, V$UF1H3BETA_Q6_M01068, V$ZFP281_01_M01597, V$MAZ_Q6_01_M02023, V$GKLF_02_M01588, V$KLF7_03_M02773, V$EGR1_Q6_M01873, V$SP1_01_M00008, V$KROX_Q6_M00982, V$ZBP89_Q4_M01816, V$SP1_02_M01303, V$EGR1_06_M02744, V$ETF_Q6_M00695, V$SP1SP3_Q4_M01219, V$GKLF_Q4_M01835, V$SP4_03_M02810, V$MAZR_01_M00491, V$ZNF219_01_M01122, V$SMAD4_04_M02898, V$ZFP281_04_M02831, V$E2F3_Q6_M02089, V$BTEB3_Q5_M01865, V$EGR_Q6_M00807, V$NGFIC_01_M00244, V$CKROX_Q2_M01175, V$CACBINDINGPROTEIN_Q6_M00720, V$EGR1_01_M00243, V$EGR1_02_M01972, V$SP4_04_M02914, Klf7.1, Egr1.1, Sp4.1, Smad3.1, Zfp281.2, Zif268.1, Sp4.2, Zfp740.1, Bcl6b.2, Zfp410.1, Ascl2.2, SP1_C2H2_DBD_monomeric_11_1, KLF16_C2H2_DBD_monomeric_11_1, SP3_C2H2_DBD_monomeric_11_1, SP4_C2H2_full_monomeric_17_1, SP8_C2H2_DBD_monomeric_12_1, KLF14_C2H2_DBD_monomeric_14_1, ZNF740_C2H2_full_monomeric_10_1

Upstream Weeder Motif

Motif1 Score	Motif1 Consensus	Motif1 Matches	Motif2 Score	Motif2 Consensus	Motif2 Matches
1.39	ACGCCG	NA	1.83	CGCACCGT	NA

3p UTR Weeder

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif1 Model	Motif2 E-Value	Motif2 Consensus	Motif2 Matches	Motif2 Model
0.85	CGGTAC	NA	NA	1.02	AGACNGTA	NA	NA

3p UTR PITA

miRNAs	percTargets	pValue
NA

3p UTR TargetScan

miRNAs	percTargets	pValue
NA

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