TargetScan_65 megaCluster: 2 Residual: 0.24

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
TargetScan_65 2 0.24 15 0 0.899967 0

Members

Displaying 1 - 40 of 40
107350 expressed sequence AW112010

Details for - - expressed sequence AW112010

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 107350

Tuberculist Genomic Region

109082 F-box and WD-40 domain protein 17

Details for - - F-box and WD-40 domain protein 17

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 109082

Tuberculist Genomic Region

140559 immunoglobulin superfamily, member 8

Details for - - immunoglobulin superfamily, member 8

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 140559

Tuberculist Genomic Region

14254 FMS-like tyrosine kinase 1

Details for - - FMS-like tyrosine kinase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14254

Tuberculist Genomic Region

16913 proteasome (prosome, macropain) subunit, beta type 8 (large multifunctional peptidase 7)

Details for - - proteasome (prosome, macropain) subunit, beta type 8 (large multifunctional peptidase 7)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16913

Tuberculist Genomic Region

17940 NLR family, apoptosis inhibitory protein 1

Details for - - NLR family, apoptosis inhibitory protein 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17940

Tuberculist Genomic Region

20723 serine (or cysteine) peptidase inhibitor, clade B, member 9

Details for RP23-391I11.1 - serine (or cysteine) peptidase inhibitor, clade B, member 9

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20723

Tuberculist Genomic Region

216549 aftiphilin

Details for RP23-452C23.3 - aftiphilin

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 216549

Tuberculist Genomic Region

21847 Kruppel-like factor 10

Details for - - Kruppel-like factor 10

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 21847

Tuberculist Genomic Region

22436 xanthine dehydrogenase

Details for - - xanthine dehydrogenase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 22436

Tuberculist Genomic Region

230088 family with sequence similarity 214, member B

Details for RP23-124L1.9 - family with sequence similarity 214, member B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 230088

Tuberculist Genomic Region

236573 guanylate-binding protein 9

Details for - - guanylate-binding protein 9

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 236573

Tuberculist Genomic Region

30925 SLAM family member 6

Details for - - SLAM family member 6

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 30925

Tuberculist Genomic Region

56380 AT rich interactive domain 3B (BRIGHT-like)

Details for - - AT rich interactive domain 3B (BRIGHT-like)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56380

Tuberculist Genomic Region

60361 membrane-spanning 4-domains, subfamily A, member 4B

Details for - - membrane-spanning 4-domains, subfamily A, member 4B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 60361

Tuberculist Genomic Region

638247 RIKEN cDNA 9530082P21 gene

Details for - - RIKEN cDNA 9530082P21 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 638247

Tuberculist Genomic Region

666926 predicted gene 8369

Details for - - predicted gene 8369

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 666926

Tuberculist Genomic Region

68087 dephospho-CoA kinase domain containing

Details for RP23-463E7.9 - dephospho-CoA kinase domain containing

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68087

Tuberculist Genomic Region

69440 DENN/MADD domain containing 6B

Details for - - DENN/MADD domain containing 6B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 69440

Tuberculist Genomic Region

70086 cysteinyl leukotriene receptor 2

Details for - - cysteinyl leukotriene receptor 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 70086

Tuberculist Genomic Region

71782 ankyrin repeat and LEM domain containing 2

Details for - - ankyrin repeat and LEM domain containing 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 71782

Tuberculist Genomic Region

74568 mixed lineage kinase domain-like

Details for - - mixed lineage kinase domain-like

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74568

Tuberculist Genomic Region

77590 carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15

Details for - - carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 77590

Tuberculist Genomic Region

101985 U6 snRNA biogenesis 1

Details for - - U6 snRNA biogenesis 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 101985

Tuberculist Genomic Region

13011 cystatin F (leukocystatin)

Details for RP23-156P22.1 - cystatin F (leukocystatin)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 13011

Tuberculist Genomic Region

13805 endoglin

Details for RP23-17P12.4 - endoglin

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 13805

Tuberculist Genomic Region

14659 glutamine repeat protein 1

Details for - - glutamine repeat protein 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14659

Tuberculist Genomic Region

15042 histocompatibility 2, T region locus 24

Details for - - histocompatibility 2, T region locus 24

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 15042

Tuberculist Genomic Region

16497 potassium voltage-gated channel, shaker-related subfamily, beta member 1

Details for - - potassium voltage-gated channel, shaker-related subfamily, beta member 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16497

Tuberculist Genomic Region

16542 kinase insert domain protein receptor

Details for - - kinase insert domain protein receptor

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16542

Tuberculist Genomic Region

17454 Moloney leukemia virus 10

Details for - - Moloney leukemia virus 10

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17454

Tuberculist Genomic Region

17954 nucleosome assembly protein 1-like 2

Details for - - nucleosome assembly protein 1-like 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17954

Tuberculist Genomic Region

213233 TAP binding protein-like

Details for - - TAP binding protein-like

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 213233

Tuberculist Genomic Region

227671 globoside alpha-1,3-N-acetylgalactosaminyltransferase 1

Details for RP23-430H1.5 - globoside alpha-1,3-N-acetylgalactosaminyltransferase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 227671

Tuberculist Genomic Region

381417 predicted gene 14085

Details for RP23-357I14.1 - predicted gene 14085

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 381417

Tuberculist Genomic Region

54153 RAS p21 protein activator 4

Details for - - RAS p21 protein activator 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 54153

Tuberculist Genomic Region

56055 GTP binding protein 2

Details for - - GTP binding protein 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56055

Tuberculist Genomic Region

59045 START domain containing 3

Details for RP23-355L10.4 - START domain containing 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 59045

Tuberculist Genomic Region

66307 isochorismatase domain containing 1

Details for - - isochorismatase domain containing 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66307

Tuberculist Genomic Region

320148 RIKEN cDNA B430306N03 gene

Details for - - RIKEN cDNA B430306N03 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 320148

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
IRF9_IRF_full_trimeric_15_1 0.368421 0.0000000047

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
0.77 CGGGGT NA 0.72 GCAGCTCG NA

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.51 GGNGAG NA NA 0.55 GGNNATGA NA NA

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
NA

Add comment

Log in or register to post comments