TargetScan_84 megaCluster: 5 Residual: 0.28

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
TargetScan_84 5 0.28 10 0 0.729997 0.199

Members

Displaying 1 - 59 of 59
100041482 cadherin 11 pseudogene

Details for - - cadherin 11 pseudogene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100041482

Tuberculist Genomic Region

12140 fatty acid binding protein 7, brain

Details for - - fatty acid binding protein 7, brain

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12140

Tuberculist Genomic Region

16950 lysyl oxidase-like 3

Details for - - lysyl oxidase-like 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16950

Tuberculist Genomic Region

171210 acyl-CoA thioesterase 2

Details for - - acyl-CoA thioesterase 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 171210

Tuberculist Genomic Region

18784 phospholipase A2, group V

Details for RP23-352K10.5 - phospholipase A2, group V

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 18784

Tuberculist Genomic Region

21871 ATPase, H+ transporting, lysosomal V0 subunit A2

Details for - - ATPase, H+ transporting, lysosomal V0 subunit A2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 21871

Tuberculist Genomic Region

223920 sterol O-acyltransferase 2

Details for - - sterol O-acyltransferase 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 223920

Tuberculist Genomic Region

231532 Rho GTPase activating protein 24

Details for - - Rho GTPase activating protein 24

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 231532

Tuberculist Genomic Region

237256 zinc finger CCCH type containing 12D

Details for - - zinc finger CCCH type containing 12D

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 237256

Tuberculist Genomic Region

239706 methyltransferase like 22

Details for - - methyltransferase like 22

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 239706

Tuberculist Genomic Region

244891 S phase cyclin A-associated protein in the ER

Details for - - S phase cyclin A-associated protein in the ER

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 244891

Tuberculist Genomic Region

246727 2'-5' oligoadenylate synthetase 3

Details for - - 2'-5' oligoadenylate synthetase 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 246727

Tuberculist Genomic Region

27369 deoxyguanosine kinase

Details for - - deoxyguanosine kinase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 27369

Tuberculist Genomic Region

276905 armadillo repeat containing 7

Details for RP23-392H19.6 - armadillo repeat containing 7

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 276905

Tuberculist Genomic Region

277146 T cell receptor alpha variable 6D-4

Details for - - T cell receptor alpha variable 6D-4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 277146

Tuberculist Genomic Region

29863 phosphodiesterase 7B

Details for - - phosphodiesterase 7B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 29863

Tuberculist Genomic Region

320534 transmembrane protein 104

Details for RP23-117K15.1 - transmembrane protein 104

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 320534

Tuberculist Genomic Region

327942 phosphatidylinositol glycan anchor biosynthesis, class L

Details for RP23-234K24.2 - phosphatidylinositol glycan anchor biosynthesis, class L

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 327942

Tuberculist Genomic Region

329693 Fc receptor-like 5

Details for - - Fc receptor-like 5

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 329693

Tuberculist Genomic Region

52466 solute carrier family 46, member 1

Details for RP23-399H5.1 - solute carrier family 46, member 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 52466

Tuberculist Genomic Region

544817 Rho GTPase activating protein 27

Details for RP23-341C5.7 - Rho GTPase activating protein 27

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 544817

Tuberculist Genomic Region

57248 lymphocyte antigen 6 complex, locus I

Details for - - lymphocyte antigen 6 complex, locus I

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 57248

Tuberculist Genomic Region

667754 carboxylesterase 2D, pseudogene

Details for - - carboxylesterase 2D, pseudogene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 667754

Tuberculist Genomic Region

66795 autophagy related 10

Details for - - autophagy related 10

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66795

Tuberculist Genomic Region

66990 transmembrane protein 134

Details for - - transmembrane protein 134

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66990

Tuberculist Genomic Region

71998 dihydrodiol dehydrogenase (dimeric)

Details for - - dihydrodiol dehydrogenase (dimeric)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 71755

Tuberculist Genomic Region

74202 solute carrier family 25, member 35

Details for RP23-396M19.7 - solute carrier family 25, member 35

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 71998

Tuberculist Genomic Region

74306 filamin binding LIM protein 1

Details for RP23-291H3.1 - filamin binding LIM protein 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74202

Tuberculist Genomic Region

75731 protease, serine 46

Details for - - protease, serine 46

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74306

Tuberculist Genomic Region

76916 idnK gluconokinase homolog (E. coli)

Details for - - idnK gluconokinase homolog (E. coli)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 75731

Tuberculist Genomic Region

77976 translocase of inner mitochondrial membrane domain containing 1

Details for - - translocase of inner mitochondrial membrane domain containing 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 76916

Tuberculist Genomic Region

791288 NUAK family, SNF1-like kinase, 1

Details for - - NUAK family, SNF1-like kinase, 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 77976

Tuberculist Genomic Region

83382 predicted gene 9881

Details for - - predicted gene 9881

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 791288

Tuberculist Genomic Region

109115 sialic acid binding Ig-like lectin E

Details for - - sialic acid binding Ig-like lectin E

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 83382

Tuberculist Genomic Region

12483 suppressor of Ty 3

Details for AC164546.1 - suppressor of Ty 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 109115

Tuberculist Genomic Region

12982 CD22 antigen

Details for - - CD22 antigen

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12483

Tuberculist Genomic Region

14051 colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)

Details for - - colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12982

Tuberculist Genomic Region

14990 eyes absent 4 homolog (Drosophila)

Details for - - eyes absent 4 homolog (Drosophila)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14051

Tuberculist Genomic Region

16819 histocompatibility 2, M region locus 2

Details for - - histocompatibility 2, M region locus 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14990

Tuberculist Genomic Region

17394 lipocalin 2

Details for RP23-161B9.11-003 - lipocalin 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16819

Tuberculist Genomic Region

20558 matrix metallopeptidase 8

Details for - - matrix metallopeptidase 8

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17394

Tuberculist Genomic Region

237253 schlafen 4

Details for RP23-308N3.2 - schlafen 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20558

Tuberculist Genomic Region

432702 low density lipoprotein receptor-related protein 11

Details for - - low density lipoprotein receptor-related protein 11

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 237253

Tuberculist Genomic Region

54123 immunoglobulin heavy variable 1-4

Details for - - immunoglobulin heavy variable 1-4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 432702

Tuberculist Genomic Region

67893 interferon regulatory factor 7

Details for - - interferon regulatory factor 7

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 54123

Tuberculist Genomic Region

70785 transmembrane protein 86A

Details for - - transmembrane protein 86A

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67893

Tuberculist Genomic Region

71733 DENN/MADD domain containing 1C

Details for - - DENN/MADD domain containing 1C

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 70785

Tuberculist Genomic Region

71898 sushi domain containing 2

Details for - - sushi domain containing 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 71733

Tuberculist Genomic Region

11432 apolipoprotein L 9b

Details for - - apolipoprotein L 9b

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 71898

Tuberculist Genomic Region

14962 acid phosphatase 2, lysosomal

Details for RP23-20F9.7 - acid phosphatase 2, lysosomal

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 11432

Tuberculist Genomic Region

15019 complement factor B

Details for RP24-317H19.4 - complement factor B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14962

Tuberculist Genomic Region

16068 histocompatibility 2, Q region locus 8

Details for - - histocompatibility 2, Q region locus 8

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 15019

Tuberculist Genomic Region

233575 interleukin 18 binding protein

Details for - - interleukin 18 binding protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16068

Tuberculist Genomic Region

243371 post-GPI attachment to proteins 2

Details for - - post-GPI attachment to proteins 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 233575

Tuberculist Genomic Region

319880 leucine rich repeat containing 61

Details for - - leucine rich repeat containing 61

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 243371

Tuberculist Genomic Region

320832 transmembrane and coiled coil domains 3

Details for - - transmembrane and coiled coil domains 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 319880

Tuberculist Genomic Region

434325 signal-regulatory protein beta 1A

Details for - - signal-regulatory protein beta 1A

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 320832

Tuberculist Genomic Region

50721 transmembrane protein 221

Details for - - transmembrane protein 221

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 434325

Tuberculist Genomic Region

Details for - - sirtuin 6

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 50721

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
NA

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
0.0011 TKNCTKYCTSTS NA 0.011 TTTTGTTTSTTT Foxd3_MA0041.1, FOXI1_MA0042.1, V$ZFP105_03_M02827, V$FOX_Q2_M00809, V$HNF3G_Q4_M02015, V$FOXD3_01_M00130, V$FOXP1_01_M00987, V$HFH3_01_M00289, Zfp105.1

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
0.74 TTCCGC Spic.1, Sfpi1.3 0.78 CSTCACCC NA

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.41 CGCGTT NA NA 0.47 CCNATCAC NA NA

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
NA

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