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[+] Show/hide bicluster #473 rows and columns.
bicluster 473
Mycobacterium tuberculosis H37Rv
9x241
[+] Show/hide bicluster #473 rows (genes).
bicluster 473 genes
Mycobacterium tuberculosis H37Rv
9
[+] Show/hide bicluster #473 rows (short gene names).
bicluster 473 short names
Mycobacterium tuberculosis H37Rv
9
short_name
[+] Show/hide bicluster #473 rows (long gene names).
bicluster 473 long names
Mycobacterium tuberculosis H37Rv
9
long_name
[+] Show/hide bicluster #473 rows (NCBI RefSeq gene IDs).
bicluster 473 NCBI RefSeq IDs
Mycobacterium tuberculosis H37Rv
16
[+] Show/hide bicluster #473 gene upstream sequences.
bicluster 473 upstream sequences
Mycobacterium tuberculosis H37Rv
9
upstream
[+] Show/hide bicluster #473 columns (arrays; conditions).
bicluster 473 arrays
Mycobacterium tuberculosis H37Rv
241
[+] Show/hide bicluster #473 ratios.
bicluster 473 ratios
Mycobacterium tuberculosis H37Rv
9x241
GENES 2885:::Strain.9800608...replicate.3 2885:::Strain.9800608..replicate.1 2885:::Strain.9800608..replicate.2 2885:::Strain.9802826..replicate.3 2885:::Strain.H37Ra..replicate.4 2885:::Strain.M3061a..replicate.1 4055:::H37Rv.Vs.M.bovis.rep3 4060:::H37Rv.0.05..SDS.exposure.for.1h.rep.5 4060:::H37Rv.sigE.null.0.05..SDS.exposure.for.1h.rep.5 4060:::H37Rv.sigE.null.0.05..SDS.exposure.for.1h.rep.6 4062:::CDC1551.Ctrl.vs.0.05.mM.DETA.NO.40.min.rep.3 4062:::H37Rv.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.1 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.24hrs...0.5.mM.DNO.40min.rep.4 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.24hrs.rep.1 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.5min.rep.2 4062:::MTB.strain.1254.Ctrl.vs.high.aeration...0.05.mM.DETA.NO.rep.1 4062:::MTB.strain.1254.Ctrl.vs.high.aeration.rep1 4062:::MTB.strain.1254.Ctrl.vs.low.aeration...0.001.mM.DETA.NO.rep.1 4084:::High.iron.wt.vs.low.iron.wt.1b 4084:::High.iron.wt.vs.low.iron.wt.2b 4089:::H37Rv.whiB7.null.ethanol.vs..1.0.ug.ml.Tetracyclin.for.2.hr.rep.3 4089:::H37Rv.whiB7.null.ethanol.vs..1.0.ug.ml.Tetracyclin.for.24.hr.rep.2 4089:::H37Rv.whiB7.null.vs..H37Rv.whiB7.null.with.whiB7.over.expression.rep.5 4089:::H37Rv.wild.type.vs..H37Rv.whiB7.null.rep.2 4089:::H37Rv.wild.type.vs..H37Rv.whiB7.null.with.whiB7.over.expression.rep.4 4089:::H37Rv.wild.type.vs..H37Rv.whiB7.null.with.whiB7.over.expression.rep.5 4089:::H37Rv.wild.type.vs..H37Rv.whiB7.null.with.whiB7.over.expression.rep.6 4089:::MTB1254.control.vs..1.0.ug.ml.Erythromycin.for.2.hr..ref..rep.4 4089:::MTB1254.control.vs..1.0.ug.ml.Erythromycin.for.24.hr..ref..rep.2 4089:::MTB1254.control.vs..1.0.ug.ml.Erythromycin.for.24.hr..ref..rep.5 4089:::MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.2.hr..ref..rep.1 4089:::MTB1254.control.vs..25.ug.ml.Streptomycin.for.15.min.rep.3 4089:::MTB1254.control.vs..5.0.ug.ml.Streptomycin.for.15.min.rep.1 4089:::MTB1254.ethanol.vs..0.5.ug.ml.Tetracyclin.for.30.min.rep.2 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Erythromycin.for.30.min.rep.3 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Erythromycin.for.30.min.rep.4 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.2.hr.rep.3 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.30.min.rep.1 4089:::MTB1254.ethanol.vs..100.ug.ml.Erythromycin.for.15.min.rep.1 4089:::MTB1254.ethanol.vs..25.ug.ml.Erythromycin.for.15.min.rep.1 4089:::MTB1254.ethanol.vs..5.0.ug.ml.Tetracyclin.for.30.min.rep.1 4089:::MTB1254.vs..MTB1254.rep6 4099:::H37Rv.hypoxia.2hr.rep.4 4101:::H37Rv.Day14.2 4107:::Dubos.NRP.1vsDubos.log.phase 4107:::EMB..10ug.mL..DMSO..12h 4107:::EMB.10ug.mL.vs.DMSO.12h.4 4107:::Rif.0.5ug.mL.vsDMSO.2.5hA 4107:::Succinate.7H9.based.medium..1 4107:::Succinate.7H9.based.medium..2 4107:::WT.t.6h.WT.t.0h..1 4107:::X.109..10ug.mL..vs.DMSO..12h..replicate.1..GEO.acc..GSM28053. 4107:::X.109..1ug.mL..vs.DMSO..12h..replicate.2..GEO.acc.GSM28052. 4107:::X0.12mg.mL.BZA.pH5.6..4h..1 4107:::X0.12mg.mL.BZA.pH5.6..4h..2 4107:::X0.12mg.mL.BZAvspH5.6..11h. 4107:::X0.12mg.mL.Nam.pH5.6..2h..1 4107:::X0.12mg.mL.NamvspH5.6..5.5h. 4107:::X0.12mg.mL.PZA.pH5.6..5h. 4107:::X0.12mg.mL.PZAvspH5.6..11h. 4107:::X0.1ug.mL.RifpvsEtOH..6h 4107:::X0.4ug.mL.PA824.DMSO..6h..1 4107:::X0.5ug.mL..121940vsDMSO.6hA 4107:::X0.5ug.mL..124196vsDMSO..6hA 4107:::X0.5ug.mL.CervsEtOH..6h 4107:::X1.2mg.mL.NamvspH5.6..5h. 4107:::X1.ug.mL..111891vsDMSO..6h 4107:::X100ug.mLCephalexinvsEtOH.6hA 4107:::X10ug.mL..109vsDMSO..6h 4107:::X10ug.mL..59vsDMSO..6h 4107:::X10ug.mL.CapvsEtOH..6h 4107:::X10ug.mL.PA.1vsDMSO..6h 4107:::X10ug.mL.RoxvsEtOH..6h 4107:::X10ug.mL.TetvsEtOH..6h 4107:::X12.5ug.mL.AntimycinvsDMSO..6h 4107:::X130ug.mL.TLMvsDMSO..6h 4107:::X130ug.mL.TLMvsDMSO..6hA 4107:::X1mM.DTNBvsDMSO..6h 4107:::X30ug.mL.RoxvsEtOH..6h 4107:::X4mM.H2O2vsctrl..1h. 4107:::X50ug.mL.RoxvsEtOH..6hA 4107:::X5ug.mL.AmivsEtOH..6hA 4107:::X5ug.mL.CFZ.0.1mM.GSNO.DMSO..2 4107:::X5ug.mLProcept.6778vsDMSO.6hA 4107:::X7d.Dubos.NRP.1vsDubos.log.phase 4107:::X7d.Dubos.NRP.1vsDubos.log.phase.A 4363:::H37Rv.hypoxia.4hr.rep.3 4365:::H37Rv.sigma.H.null.mutant.diamide.1h.rep.4 4396:::H37Rv.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.3 4396:::Strain.32.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.1 4396:::Strain.32.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.2 4489:::MTB1254.Opp.KO.complemented.vs.Opp.KO.in.7H9OADC..OD..1.0.1 4489:::MTB1254.Opp.KO.complemented.vs.Opp.KO.in.7H9OADC..OD..1.0.3 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC..OD.0.3.1 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC.Exp2..OD1.1 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC.Exp2..OD1.5.2 4523:::H37Rv.sigB.null.mutant.control.vs.0.05..SDS.for.60.min.rep.1 4570:::MTB.strain.TB294.Ctrl.vs.SigA.overexpression.rep1 4575:::Purified.Human.SP.A.Uncoated.2hrs.rep3 4575:::Purified.Surfactant.Lipids.2hrs.rep.1 4575:::Whole.Lung.Surfactant.2hrs.rep.1 4575:::Whole.Lung.Surfactant.30min.rep.2 4583:::X0.4ug.ml.PA.824.vs.DMSO.6hrs.rep.1 4583:::X130ug.ml.TLM.vs.DMSO.6hrs.rep.2 4599:::H37Rv.vs.SigE.mutant.24hrs.after.macrophage.infection.rep.1 4599:::H37Rv.wild.type.vs.sigE.mutant.in.RPMI.media.for.2.hrs..DS..rep.3 4615:::AA_30uM_1h_07 4615:::AA_30uM_24h_02 4615:::AA_30uM_24h_04 4615:::AA_30uM_2h_01 4615:::AA_30uM_2h_04 4615:::AA_30uM_2h_06 4615:::AA_30uM_2h_09 4615:::AA_30uM_30min_06 4615:::Acetate.3mM.10m.02 4615:::Acetate.3mM.30m.01 4615:::Acetate.3mM.30m.06 4615:::Acetate.3mM.60m.02 4615:::C2_ceramide_5uM_1h_01 4615:::CA_50uM_10min_01 4615:::CHP_25uM_2h_01 4615:::CHP.AA.4h.1 4615:::CK_OA_NA_0.05_2h 4615:::CK_OA_NA_2h.02 4615:::CK.1.2h.for.AA.NA.and.LA.NA 4615:::CK.AA.2h 4615:::CK.AA.Na.2h 4615:::CK.AA0.03.2h.02 4615:::CK.for.AA.NA.2h.2 4615:::CK.for.AA.NA.4h 4615:::CK.for.AA.Na.4h.2 4615:::CK.for.MDG.4h.PA.NA 4615:::CK.for.MDG.OA.Na.24h 4615:::CK.MDG.2h.for.PA.NA 4615:::CK.MDG.2h.for.PA.NA.2 4615:::CK.MDG.AA.Na.2h 4615:::ETYA_10uM.AA_1h_02 4615:::ETYA_30uM_10min.02 4615:::ETYA_30uM_10min.03 4615:::L2A_30uM_2h_05 4615:::L2A_30uM_4h_06 4615:::L2A_30uM_4h_T0_01 4615:::L2A_30uM_4h_T0_02 4615:::MAPP_5uM_30m_01 4615:::MDA_1254.pMV261_01 4615:::MDA_1254.pMV261_04 4615:::MDG_1254.pMV261_04 4615:::MTB1254_FA5_10min_03 4615:::MTB1254_FA5_10min_04 4615:::MTB1254_FA5_1h_01 4615:::MTB1254_Pellicle_10D_02 4615:::MTB1254_Pellicle_14D_03 4615:::MTB1254_Pellicle_56D_01 4615:::MTB1254_SDS_90MIN_01 4615:::MTB1254.0465.4._SDS_60MIN_01 4615:::MTB1254.0485.1._PA_12h_03 4615:::MTB1254.0485.1._PA_4h_01 4615:::MTB1254.0485.1._PA_4h_02 4615:::MTB1254.0485.1._PA_4h_03 4615:::MTB1254.0485.1._PA_4h_04 4615:::MTB1254.0494.4._OA_30MIN_01 4615:::MTB1254.1683._01 4615:::MTB1254.3219.1._01 4615:::MTB1254.3524.1._PA_12h_04 4615:::MTB1254.B4.1._OA_10MIN_01 4615:::MTB1254.B4.1._OA_30MIN_04 4615:::MTB1254.B4.1._PA_4h_03 4615:::MTB1254.B4.1._PA_4h_04 4615:::MTB1370_PA50_1h_04 4615:::OA_50uM_10min_02 4615:::OA_50uM_10min_03 4615:::OA_50uM_10min_04 4615:::OA_50uM_24h_04 4615:::OA_50uM_2h_08 4615:::OA_50uM_30min_02 4615:::OA_50uM_30min_04 4615:::PA_100uM_2h_03 4615:::PA_10uM_2h_T0_01 4615:::PA_300uM_24h_T0_01 4615:::PA_300uM_2h_T0_01 4615:::PA_50uM_10min_04 4615:::PA_50uM_10min_07 4615:::PA_50uM_1h_07 4615:::PA_50uM_24h_07 4615:::PA_50uM_24h_08 4615:::PA_50uM_2h_01 4615:::PA_50uM_2h_06 4615:::PA_50uM_2h_T0_01 4615:::PA_50uM_30min_01 4615:::PA_50uM_30min_02 4615:::PA_50uM_3d_06 4615:::PA_50uM.OA_30uM_24h_01 4615:::Rv_OA30_30mim_01 4615:::Rv.MT90_100503_01 4615:::Rv3524.1_OA_10min 4615:::Starvation_1254_24h_04 4615:::Starvation_1254_PA50_24h_02 4615:::TBD040 4615:::TBD099 4615:::TBE733 4615:::Test_ceramide_5uM 4615:::WT_85.1_OA_10min_01 4615:::WT_85.1_PA_10min_02 4615:::X7H9_PA100um_4h_T0_01 4615:::X7H9MTB1254.0465.4._SDS_90MIN_01 4696:::H37Rv.wt.vs.dosS.dosT.null.anaerobic.Gaspak.4hr.rep.1 4696:::H37Rv.wt.vs.dosS.dosT.null.anaerobic.Gaspak24hr.rep.1 4696:::H37Rv.wt.vs.dosS.dosT.null.anaerobic.Gaspak24hr.rep.2 4696:::H37Rv.wt.vs.dosS.dosT.null.anaerobic.Gaspak24hr.rep.3 4696:::H37Rv.wt.vs.dosS.null.anaerobic.Gaspak.24hr.rep.2 4696:::H37Rv.wt.vs.dosS.null.anaerobic.Gaspak.4hr.rep.1 4696:::H37Rv.wt.vs.dosT.null.anaerobic.Gaspak.4hr.rep.1 4696:::H37Rv.wt.vs.dosT.null.anaerobic.Gaspak24hr.rep.1 4696:::H37Rv.wt.vs.dosT.null.anaerobic.Gaspak24hr.rep.3 4696:::H37Rv.wt.vs.dosT.null.nitric.oxide.treatment.1hr.rep.1 4696:::H37Rv.wt.vs.dosT.null.rapid.anaerobic.dormancy.day.6.rep.3 4699:::CDC1551.Ctrl.vs.clinical.isolate.5468.02_Afri2.rep.3 4699:::CDC1551.Ctrl.vs.clinical.isolate.9532.03_Haarlem.rep.1 4703:::Clinical.isolate.2191.99_Uganda.extra.vs.intracellular.in.resting.macrophages.rep.1 4703:::Clinical.isolate.4850.03_EAI.extra.vs.intracellular.in.resting.macrophages.rep.2 4703:::Clinical.isolate.9532.03_Haarlem.extra.vs.intracellular.in.resting.macrophages.rep.1 4704:::Clinical.isolate.2336.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.2 4704:::Clinical.isolate.4850.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.1 4729:::H37Rv.wild.type.vs.PepD.null.mutant..DS..rep.1 4795:::CDC1551.ctrl.vs.40.ug.ml.Thioridazine.6hr.rep.2 4799:::H37Rv.ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.3 4802:::H37Rv.ctrl.vs.relE1.overexpression.24.hr.rep.2 4802:::H37Rv.ctrl.vs.relE2.overexpression.6.hr.rep.2 4802:::H37Rv.ctrl.vs.relE2.overexpression.6.hr.rep.3 4802:::H37Rv.ctrl.vs.relE2.overexpression.72.hr.rep.5 4802:::H37Rv.ctrl.vs.relE3.overexpression.24.hr.rep.1 4802:::H37Rv.ctrl.vs.relE3.overexpression.6.hr.rep.2 4815:::H37Rv.reaeration.for.12hrs.rep.2 4815:::H37Rv.reaeration.for.24hrs.rep.5 4815:::H37Rv.reaeration.for.4hrs.rep.3 4928:::Mtb.Erdman.strain.200.ppm.CO.rep.2 Milano_Tuberculosis2009:::H37Rv.wild.type.vs.H37Rv.Bif1.mutant.rep.2 Milano_Tuberculosis2009:::H37Rv.wild.type.vs.H37Rv.Bif1.mutant.rep.3 Provvedi_Microbiology2009:::H37Rv.Control.vs.400.ug.ml.vancomycin.for.4.hrs.DS.rep.2 Provvedi_Microbiology2009:::H37Rv.Control.vs.subinhibitory.conc..5.ug.ml..vancomycin.rep.1 Raghavan_Nature2008:::espR.mutant..R...rep2
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RV3205C -1.15 -0.5 0.0999999999999998 0.2 0.9 0.55 -0.625 0.55 -0.3 -2.85 -0.8 0.2 0.95 -1.55 1.75 NA -0.25 -0.4 -1.125 -0.0750000000000001 -0.0539592607581276 -0.377714825306893 0.485633346823149 0.107918521516255 -0.0809388911371914 0.0539592607581276 0.188857412653447 -1.07918521516255 -1.78065560501821 -0.890327802509106 0.107918521516255 -0.107918521516255 -0.647511129097531 0.539592607581276 0.728450020234723 0.431674086065021 0.0809388911371914 2.02347227842979 0.0809388911371914 -1.10616484554162 1.40294077971132 -0.539592607581276 0.475 -0.286147594929465 0.0870310657389155 -0.652732993041866 -0.630975226607138 -0.0870310657389155 -0.630975226607138 -0.652732993041866 -1.52304365043102 -0.805037358084969 -0.630975226607138 -0.652732993041866 0.130546598608373 0.130546598608373 0.630975226607138 -0.522186394433493 1.21843492034482 -0.0870310657389155 0.326366496520933 1.15316162104063 0.282850963651475 -0.0435155328694578 0.0652732993041866 0.761521825215511 0.892068423823884 0.239335430782018 -0.478670861564035 -0.456913095129307 0.261093197216747 0.870310657389155 -0.826795124519697 -0.565701927302951 0.609217460172409 -0.456913095129307 -0.674490759476595 0.761521825215511 -0.892068423823884 -0.848552890954426 -0.848552890954426 -0.456913095129307 -0.913826190258613 0.0217577664347288 -0.478670861564035 -0.435155328694578 0.760595962814033 0 0 -1.22995373786909 -0.23805556216821 -1.05 -0.55 0.9 0.45 1.2 -0.505868069607446 1.07918521516255 -0.23125397467769 0.539592607581276 1.85003179742152 -0.616677265807173 0.788635349541865 -0.954663844182258 -0.192711645564741 -0.192711645564741 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.463083207998856 0.0402681050433788 0.503351313042235 1.42951772903995 -0.0402681050433788 -1.3288474664315 -0.986568573562781 -0.362412945390409 1.46978583408333 -0.362412945390409 0.302010787825341 1.09845637971903 -0.867202405041337 0.385423291129483 1.6380489873003 -1.89499784805329 -0.698579715172188 1.61396003160471 2.11982810121216 0.829291917389257 -0.0613173417705995 -0.621796168892486 0.790418858761635 -0.052694590584109 -0.179161607985971 -1.31736476460273 0.326706461621476 0.37615830816964 -0.998765163071112 -0.108091467864839 -0.65 -0.337081245 1.135245305 -1.77315520700737 0.412740651651085 -0.256356266516935
[+] Show/hide bicluster #473 motif PSSM #1. bicluster 473 motif PSSM #1 Mycobacterium tuberculosis H37Rv 24x4
POSITION A C G T
1 0.5 0 0 0.5
2 0.5 0 0 0.5
3 0.5 0.5 0 0
4 0 0 0 1
5 0 0.5 0 0.5
6 0 0 1 0
7 0 0 0.5 0.5
8 1 0 0 0
9 0 0 0 1
10 0 0 1 0
11 0 0 0 1
12 0 0.5 0.5 0
13 0 0 0 1
14 0 1 0 0
15 0 0 1 0
16 0 0 0 1
17 0 0 0 1
18 0 0.5 0.5 0
19 0 1 0 0
20 0 0 0.5 0.5
21 0 0 0 1
22 0 0 0.5 0.5
23 0.5 0 0 0.5
24 0 0 1 0 [+] Show/hide bicluster #473 motif PSSM #2. bicluster 473 motif PSSM #2 Mycobacterium tuberculosis H37Rv 24x4
POSITION A C G T
1 0 1 0 0
2 0 1 0 0
3 0 0 1 0
4 1 0 0 0
5 0 0 0 1
6 1 0 0 0
7 0 0.833333 0.166667 0
8 0.166667 0.833333 0 0
9 0 0.333333 0.333333 0.333333
10 0.5 0.333333 0.166667 0
11 0 1 0 0
12 0 0.5 0 0.5
13 0.166667 0.5 0.333333 0
14 0.5 0.166667 0 0.333333
15 0.833333 0.166667 0 0
16 0.333333 0 0.333333 0.333333
17 0.166667 0 0 0.833333
18 0.333333 0.333333 0.333333 0
19 0.333333 0 0 0.666667
20 0 0.833333 0.166667 0
21 0 1 0 0
22 0 0.166667 0.333333 0.5
23 0.833333 0.166667 0 0
24 0.333333 0 0.166667 0.5 |