Rv3765c putative two-component system response regulator

Rv3765c (putative two-component system response regulator) is predicted to be co-regulated in modules bicluster_0352 with residual 0.50 and bicluster_0526 with residual 0.56.

This regulation is possibly mediated by two de-novo identified cis-regulatory motifs in each module with e-values , 0.01 and 2,900.00 for bicluster_0352 and 450.00 and 8,100.00 for bicluster_0526 respectively.

These modules are enriched for following go terms: cellular biosynthetic process, organic substance biosynthetic process, translational elongation, macromolecule metabolic process, biosynthetic process, intracellular, macromolecular complex, translation elongation factor activity RNA binding.

This gene is found to be for growth on cholesterol.

Mutant available?:

Displaying 11 - 20 of 49
Gene Target Differential Expression Distance Expression pvalue Type
Possible membrane protein
No 24 -0.11 0.796495 Primary.TSS
\Possible mutator protein MutT3 (7,8-dihydro-8-oxoguanine-triphosphatase) \\\""
No -26 -0.01 0.986869 CDS
\Possible mutator protein MutT3 (7,8-dihydro-8-oxoguanine-triphosphatase) \\\""
No -59 -0.01 0.986869 Internal.TSS
Programmed cell death toxin YdcE
No 53 0.21 0.71286 Primary.TSS
No results were found NA 53 Internal.TSS
Probable low-affinity inorganic phosphate transporter
No -41 0.06 0.836669 Primary.TSS
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Repressed -52 -0.92 0.0421347 Primary.TSS
No -101 -0.11 0.815799 CDS
RNA polymerase sigma-70 factor, ECF subfamily
No 4 0.69 0.0588662 Primary.TSS
ATP synthase alpha chain (EC 3.6.3.14)
No 24 -0.06 0.838448 CDS
not assigned to any KEGG Pathway.
GO:0008150

biological_process

biological_process

Details: 
Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
GO Category: 
biological_process
66
Total items in this category:  
GO:0008150

biological_process

biological_process

Details: 
Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
GO Category: 
biological_process
66
Total items in this category:  
GO:0010106

cellular response to iron ion starvation

cellular response to iron ion starvation

Details: 
Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of iron ions.
GO Category: 
biological_process
14
Total items in this category:  
No TFOE experiment results were found

TRIP log2 fold abundance change

NA
Displaying 1 - 17 of 17
Condition Count Day Doublings Fitness U.I Plots
D0U 27 0 0.00 13.83 U
D3I 3 3 3.83 13.94 I
D3U 3 3 3.83 13.91 U
D5I 9 5 6.00 9.27 I
D5U 17 5 6.00 12.09 U
D7I 18 7 8.14 9.96 I
D7U 19 7 8.14 13.67 U
D14I 4 14 15.63 4.75 I
D14U 4 14 15.63 11.47 U
D17I 3 17 19.15 3.15 I
D17U 3 17 19.15 10.90 U
D21I 4 21 23.23 3.00 I
D21U 4 21 23.23 9.45 U
D24I 3 24 26.60 I
D24U 3 24 26.60 9.26 U
D28I 4 28 30.61 1.73 I
D28U 4 28 30.61 7.66 U