Rv3765c putative two-component system response regulator

Rv3765c (putative two-component system response regulator) is predicted to be co-regulated in modules bicluster_0352 with residual 0.50 and bicluster_0526 with residual 0.56.

This regulation is possibly mediated by two de-novo identified cis-regulatory motifs in each module with e-values , 0.01 and 2,900.00 for bicluster_0352 and 450.00 and 8,100.00 for bicluster_0526 respectively.

These modules are enriched for following go terms: cellular biosynthetic process, organic substance biosynthetic process, translational elongation, macromolecule metabolic process, biosynthetic process, intracellular, macromolecular complex, translation elongation factor activity RNA binding.

This gene is found to be for growth on cholesterol.

Mutant available?:

Displaying 41 - 49 of 49
Gene Target Differential Expression Distance Expression pvalue Type
Alkane-1 monooxygenase (EC 1.14.15.3)
No 34 -0.02 0.97281 Primary.TSS
No -1 -0.37 0.60074 Primary.TSS
Probable L-lysine-epsilon aminotransferase (EC 2.6.1.36) (L-lysine aminotransferase) (Lysine 6-aminotransferase)
No 48 0.25 0.644091 Primary.TSS
Histone protein Lsr2
No 46 0.13 0.758895 Primary.TSS
Induced 23 2.12 1.73e-16 Internal.TSS
Induced 14 2.12 1.73e-16 CDS
putative two-component system response regulator
Induced 30 2.76 1.56e-23 Primary.TSS
Propionyl-CoA carboxylase beta chain (EC 6.4.1.3)
No 24 0.05 0.877147 Internal.TSS
Probable forkhead-associated protein
No -60 -0.06 0.888311 Primary.TSS
not assigned to any KEGG Pathway.
GO:0008150

biological_process

biological_process

Details: 
Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
GO Category: 
biological_process
66
Total items in this category:  
GO:0008150

biological_process

biological_process

Details: 
Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
GO Category: 
biological_process
66
Total items in this category:  
GO:0010106

cellular response to iron ion starvation

cellular response to iron ion starvation

Details: 
Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of iron ions.
GO Category: 
biological_process
14
Total items in this category:  
No TFOE experiment results were found

TRIP log2 fold abundance change

NA
Displaying 1 - 17 of 17
Condition Count Day Doublings Fitness U.I Plots
D0U 27 0 0.00 13.83 U
D3I 3 3 3.83 13.94 I
D3U 3 3 3.83 13.91 U
D5I 9 5 6.00 9.27 I
D5U 17 5 6.00 12.09 U
D7I 18 7 8.14 9.96 I
D7U 19 7 8.14 13.67 U
D14I 4 14 15.63 4.75 I
D14U 4 14 15.63 11.47 U
D17I 3 17 19.15 3.15 I
D17U 3 17 19.15 10.90 U
D21I 4 21 23.23 3.00 I
D21U 4 21 23.23 9.45 U
D24I 3 24 26.60 I
D24U 3 24 26.60 9.26 U
D28I 4 28 30.61 1.73 I
D28U 4 28 30.61 7.66 U