Rv3830c Beta-carotene ketolase (EC 1.14.-.-)

Rv3830c (Beta-carotene ketolase (EC 1.14.-.-)) is predicted to be co-regulated in modules bicluster_0027 with residual 0.56 and bicluster_0178 with residual 0.53.

This regulation is possibly mediated by two de-novo identified cis-regulatory motifs in each module with e-values , 0.00 and 0.04 for bicluster_0027 and 140.00 and 36,000.00 for bicluster_0178 respectively.

These modules are enriched for following go terms: disaccharide metabolic process, trehalose metabolic process, trehalose biosynthetic process, disaccharide biosynthetic process, carbohydrate biosynthetic process .

This gene is found to be for growth on cholesterol.

Mutant available?: Yes

Displaying 21 - 30 of 71
Gene Target Differential Expression Distance Expression pvalue Type
Conserved alanine and proline rich protein
No 30 0.02 0.999473 Primary.TSS
probable conserved membrane protein
No -72 0.06 0.999473 CDS
probable conserved membrane protein
No -129 0.06 0.999473 Internal.TSS
ATP synthase C chain (EC 3.6.3.14)
No -119 -0.44 0.999473 Primary.TSS
ATP synthase alpha chain (EC 3.6.3.14)
No 16 0.02 0.999473 CDS
ABC transporter ATP-binding protein
No 4 0.31 0.999473 Primary.TSS
NLP/P60 family protein
No -32 -0.02 0.999473 Primary.TSS
Possible membrane protein
No -5 0 0.999473 CDS
4-keto-6-deoxy-N-Acetyl-D-hexosaminyl-(Lipid carrier) aminotransferase
No 70 -0.15 0.999473 Antisense.TSS
Putative membrane protein MmpL12
No 67 0 0.999473 Primary.TSS
not assigned to any KEGG Pathway.
No TFOE experiment results were found

TRIP log2 fold abundance change

NA
Displaying 1 - 17 of 17
Condition Count Day Doublings Fitness U.I Plots
D0U 27 0 0.00 12.22 U
D3I 3 3 3.83 11.92 I
D3U 3 3 3.83 11.28 U
D5I 9 5 6.00 12.82 I
D5U 17 5 6.00 12.57 U
D7I 18 7 8.14 12.18 I
D7U 19 7 8.14 11.54 U
D14I 4 14 15.63 10.27 I
D14U 4 14 15.63 10.14 U
D17I 3 17 19.15 9.54 I
D17U 3 17 19.15 9.72 U
D21I 4 21 23.23 9.51 I
D21U 4 21 23.23 9.72 U
D24I 3 24 26.60 8.36 I
D24U 3 24 26.60 9.03 U
D28I 4 28 30.61 8.68 I
D28U 4 28 30.61 9.22 U