New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 1012667 =215 (1.130)2 (0.010) 2/180 31.1 0.01 coding (1511/1884 nt) RCAP_rcc00919 hypothetical protein
?NC_014034 = 2041231 214 (1.010)coding (592/618 nt) RCAP_rcc01889 hypothetical protein
Rejected: Position hash score below cutoff.

CGCGGGAATGCCGCGGGCCTCGGTGGGTTCACTCTTGTCGCGCGGATCAGCCTGACAACCTTGCAGGCCACCGGAATGGGCTTTTTCGGCGTGCTGGCCTCGGTCGCGGC....................................................................................................  <  NC_014034/1012776‑1012667
....................................................................................................CGGTCGCGGCGGTGGTTCATTGCAATGACGATGTTGATGACGAGCGCGCCGAGCGCCGAGATCGCGACGGTCTTCCAGTCGCGCAGGGTGAGGGCGAGGCCGAAGACGCA  <  NC_014034/2041231‑2041132
                                                                                                                                                                                                                  
                                                            TTGCAGGCCACCGGAATGGGCTTTTTCGGCGTGCTGGCCTCGGTCGCGGCGGTGGTTCATTGCAATGACGATGTTGATGACGAGCGCGCCGAGCGCCGAGA                                                   >  1:1071901/1‑101 (MQ=255)
                                                                            TGGGCTTTTTCGGCGTGCTGGCCTCGGTCGCGGCGGTGGTTCATTGCAATGACGATGTTGATGACGAGCGCGCCGAGCGCCGAGATCGCGACGGTCTTCCA                                   <  2:1071807/101‑1 (MQ=255)
                                                                                                                                                                                                                  
CGCGGGAATGCCGCGGGCCTCGGTGGGTTCACTCTTGTCGCGCGGATCAGCCTGACAACCTTGCAGGCCACCGGAATGGGCTTTTTCGGCGTGCTGGCCTCGGTCGCGGC....................................................................................................  <  NC_014034/1012776‑1012667
....................................................................................................CGGTCGCGGCGGTGGTTCATTGCAATGACGATGTTGATGACGAGCGCGCCGAGCGCCGAGATCGCGACGGTCTTCCAGTCGCGCAGGGTGAGGGCGAGGCCGAAGACGCA  <  NC_014034/2041231‑2041132

Base quality scores:  ATCG  < 3 ≤  ATCG  < 31 ≤  ATCG  < 33 ≤  ATCG  < 35 ≤  ATCG  < 41 ≤  ATCG