New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	235596 =	86 (0.410)	17 (0.080)	3/200	31.7	0.20	intergenic (+25/+186)	RCAP_rcc00200/RCAP_rcc00201	MarR family transcriptional regulator/adenine‑specific DNA‑methyltransferase
	?	NC_014034	900797 =	48 (0.230)					intergenic (‑126/‑161)	ldh/ftsW	L‑lactate dehydrogenase/cell division protein FtsW
Rejected: Position hash score below cutoff.

TGAAGACTGCGTATTTGAGCCAAGAAAAAGGGGCGTATTTTTCCCAAGAAGAAACCCGTTCGCTTTTTCTTGGTGCAAATACGCCCGGGGGGTGCGGGG..................................................................................................  <  NC_014034/235694‑235596 ...................................................................................................GCGGAG..CCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTAG  >  NC_014034/900797‑900892                                                                                                                                                                                                       TGAAGACTGCGTATTTGAGCCAAGAAAAAGGGGCGTATTTTTCCCAAGAAGACACCCGTTCGCTTTTTCTTGGTGCAAATACGCCCGGGGGGTGCGGGGGg                                                                                                  >  1:1482341/1‑100 (MQ=255) TGAAGACTGCGTATTTGAGCCAAGAAAAAGGGGCGTATTTTTCCCAAGAAGAACCCCGTTCGCTTTTTCTTGGTGCAAATACGCCCGGGGGGTGCGGGGGg                                                                                                  <  1:3842134/101‑2 (MQ=255) TGAAGACTGCGTATTTGAGCCAAGAAAAAGGGGCGTATTTTTCCCAAGAAGAAACCCGTTCGCTTTTTCTTGGTGCAAATACGCCCGGGGGGTGCGGGGGg                                                                                                  >  1:2521468/1‑100 (MQ=255)  GAAGACTGCGTATTTGAGCCAAGAAAAAGGGGCGTATTTTTCCCAAGAAGAAACCCGTTCGCTTTTTCTTGGTGCAAATACGCCCGGGGGGTGCGGGGGgc                                                                                                 >  2:1309032/1‑99 (MQ=255)  GAAGACTGCGTATTTGAGCCAAGAAAAAGGGGCGTATTTTTCCCAAGAAGAAACCCGTTCGCTTTTTCTTGGTGCAAATACGCCCGGGGGGGGCGGGGGgc                                                                                                 >  2:1432704/1‑99 (MQ=255)   AAGACTGCGTATTTGAGCCAAGAAAAAGGGGCGTATTTTTCCCAAGAAGAAACCCGTTCGCTTTTTCTTGGTGCAAATACGCCCGGGGGGTGCGGGGGgcg                                                                                                >  1:3712387/1‑98 (MQ=255)      ACTGCGTATTTGAGCCAAGAAAAAGGGGCGTATTTTTCCCAAGAAGAAACCCTTTCGCTTTTTCTTGGTGCAAATACGCCCGGGGGGTGCGGGGGgcggaa                                                                                             <  1:2639804/101‑7 (MQ=255)      ACTGCGTATTTGAGCCAAGAAAAAGGGGCGTATTTTTCCCAAGAAGAAACCCGTTCGCTTTTTCTTGGTGCAAATACGCCCGGGGGGTGCGGGGGgcggaa                                                                                             >  1:2713693/1‑95 (MQ=255)       CTGCGTATTTGAGCCAAGAAAAAGGGGCGTATTTTTCCCAAGAAGAACCCCGTTCGCTTTTTCTTGGTGCAAATACGCCCGGGGGGTGCGGGGGgcggaaa                                                                                            <  2:397779/101‑8 (MQ=255)        TGCGTATTTGAGCCAAGAAAAAGGGGCGTATTTTTCCCAAGAAGAAACCCGTTCGCTTTTTCTTGGTGCAAATACGCCCGGGGGGTGCGGGGGgcggaaag                                                                                           >  1:2071232/1‑93 (MQ=255)                                                                                        GGGGGTGCGGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAAC           >  2:1990664/1‑101 (MQ=34)                                                                                          GGGTGCGGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTT         >  1:739799/1‑101 (MQ=34)                                                                                             TGCGGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGG      >  2:714751/1‑101 (MQ=32)                                                                                               CGGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCT    >  2:1828391/1‑101 (MQ=11)                                                                                                GGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTA   >  1:168831/1‑101 (MQ=1)                                                                                                 GGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTAG  >  1:3794147/1‑101 (MQ=1)                                                                                                 GGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTAG  >  2:575608/1‑101 (MQ=1)                                                                                                                                                                                                       TGAAGACTGCGTATTTGAGCCAAGAAAAAGGGGCGTATTTTTCCCAAGAAGAAACCCGTTCGCTTTTTCTTGGTGCAAATACGCCCGGGGGGTGCGGGG..................................................................................................  <  NC_014034/235694‑235596 ...................................................................................................GCGGAG..CCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAGGGGGCAACTTGGGCTAG  >  NC_014034/900797‑900892 Base quality scores:  ATCG  < 3 ≤  ATCG  < 17 ≤  ATCG  < 24 ≤  ATCG  < 33 ≤  ATCG  < 40 ≤  ATCG