New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 2764242	176 (0.890)	2 (0.010)	2/186	31.7	0.01	coding (577/1425 nt)	RCAP_rcc02577	phage integrase
	?	NC_014034	= 3166680	186 (0.880)					coding (672/2322 nt)	clpA	ATP‑dependent Clp protease ATP‑binding subunit ClpA
Rejected: Position hash score below cutoff.

GCCACCGACGCGGGGCTGATCTTCTCGCCGTTGTCCTTGAACCGGGACAGCATGTAATCGCGGACCCTGCGCGCATCATCACGCGTCAGGTCAACAAGGACCGGATC....................................................................................................  >  NC_014034/2764136‑2764242 ....................................................................................................CCGGATCGCCCACCAGAAGCGGGTTGTTCTTGCGGCGGCGGCAGAGCACCTGAATGCAGCGTTCCACCTCTTCGGCGCGGCCGATCAGCGGGTCGATGTCACCCTTT  <  NC_014034/3166680‑3166581                                                                                                                                                                                                                                                                                          CATCATCACGCGTCAGGTCAACAAGGACCGGATCGCCCACCAGAAGCGGGTTGTTCTTGCGGCGGCGGCAGAGCACCTGAATGCAGCGTTCCACCTCTTCG                                   >  2:455476/1‑101 (MQ=255)                                                                           ATCATCACGCGTCAGGTCAACAAGGACCGGATCGCCCACCAGAAGCGGGTTGTTCTTGCGGCGGCGGCAGAGCACCTGAATGCAGCGTTCCACCTCTTCGG                                  <  1:455533/101‑1 (MQ=255)                                                                                                                                                                                                                 GCCACCGACGCGGGGCTGATCTTCTCGCCGTTGTCCTTGAACCGGGACAGCATGTAATCGCGGACCCTGCGCGCATCATCACGCGTCAGGTCAACAAGGACCGGATC....................................................................................................  >  NC_014034/2764136‑2764242 ....................................................................................................CCGGATCGCCCACCAGAAGCGGGTTGTTCTTGCGGCGGCGGCAGAGCACCTGAATGCAGCGTTCCACCTCTTCGGCGCGGCCGATCAGCGGGTCGATGTCACCCTTT  <  NC_014034/3166680‑3166581 Base quality scores:  ATCG  < 3 ≤  ATCG  < 29 ≤  ATCG  < 32 ≤  ATCG  < 35 ≤  ATCG  < 41 ≤  ATCG