BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 440018	158 (0.820)	34 (0.180)	4/182	29.1	0.22	intergenic (+53/+3)	RCAP_rcc00411/RCAP_rcc00412	S58 family peptidase/arylformamidase
*	?	NC_014034	1640015 =	82 (0.390)	34 (0.180)	4/182	29.1	0.22	intergenic (+95/‑50)	mccB/mccA	methylcrotonoyl‑CoA carboxylase subunit beta/methylcrotonoyl‑CoA carboxylase subunit alpha
Rejected: Position hash score below cutoff.

Only 100 of 112 total aligned reads displayed.


ATGCCTCCGGCGGGGATATTT.GGGGC.AAGATGAAA.CCCATCCCTTT.CATCTTGCCCCAAATATCCCGGGGGGCC..C..GGGG.....G.....CG.....C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGATCGCCTGTCGGGT  >  NC_014034/1639927‑1640114


aTGCCTCCGGCGGGGATATTT.GGGGC.AAGATGAAA.CCCCTCCCTTT.CATCTTGCCCCAAATATCCCGGGGGGCC..C..GGGG.....GGGGN.CG.....C..CCCCCGCCACTTcc                                                                                             >  2:509320/1‑101 (MQ=21)


    cTCGGGCGGGTTTTTTG.GGGCC.AAGAT.AAA.CCCACCCCTTT.TCTTCTGCCCCAAATTCCCCGGGGGGGCGGG..GGGG.....G.....CGGCC..C..CCCCCGCCACTTCCGCCa                                                                                         <  2:1802052/101‑1 (MQ=255)


     ccggggggggGTATTTGGGGGA.AAGAAAAAC.CCCCCCCCTTT.CACCCTGCCCCAAATTCCCCGGGGGGCC..G..GGGG.....GGC...CGCCC..C..CCCCCGCCACTTCCGcc                                                                                          <  2:1296645/95‑1 (MQ=255)


        ggcggGGATATTT.TGGGC.AAGATGAAA.ACCATCCCTTT.CATCTTGCCCCAAATATCCCGGGGGGCC..CCGGGGGCA...G.....CG.....C..CCCCCCCCCCTTCCGCCACggg                                                                                     >  2:1750600/1‑101 (MQ=18)


          cggGGATATTT.GGGGC.AAGATGAAA.CCGATCCCTTT.CATCTTGCCCCAAATATCCCGGGGGGCC..C..GGGGGGCA.G.....CG.....C..CCCCCGCCACTTCCGCCACGGGGc                                                                                   >  2:1271544/1‑101 (MQ=21)


           ggggATATTT.GGGGC.AAGATGAAA.CCCATCCCTTT.CATCTTGCCCCAAATATCCCGGGGGGCC..C..GGGGGGNA.G.....CN.....C..CCCCCGCCACTTCCGCCACGGGGCa                                                                                  >  1:4222481/1‑101 (MQ=21)


           ggggATATTT.GGGGC.AAGATGAAA.CCCATCCCTTT.CATCTTGCCCCAAATATCCCGGGGGGCC..C..GGGGGGCA.G.....CG.....C..CCCCCGCCACTTCCGCCACGGGGCa                                                                                  >  1:1193964/1‑101 (MQ=25)


           ggggATATTT.GGGGC.AAGATGAAA.CCCATCCCTTT.CATCTTGCCCCAAATATCCCGGGGGGCC..C..GGGGGGCA.G.....CG.....C..CCCCCGCCACTTCCGCCACGGGGCa                                                                                  >  1:4156993/1‑101 (MQ=25)


            gggaatttt.GGGGA.AAAAATAAACCCCACCCTTTT.CATCTTCCCCAAAATA.CCCGGGGGGCC..C..GGGG.....GGC...CGCCC..C..CCCCCGCCACTTCCGCCACGGGGCa                                                                                  <  2:2504854/95‑1 (MQ=2)


             ggATATTT.GGGGC.AAGATGAAA.CCCATCCCTTT.CATCTTGCCCCAAATATCCCGGGGGGCC..C..GGGGGGCA.G.....CG.....C..CCCCCGCCACTTCCGCCACGGGGCAgc                                                                                >  1:2318810/1‑101 (MQ=21)


              gATATTT.GGGGC.AAGATGAAA.CCCATCCCTTT.CATCTTGCCCCAAATATCCCGGGGGGCC..C..GGGGGGCA.G.....CG.....C..CCCCCGCCACTTCCGCCACGGGGCAgcg                                                                               >  2:1760374/1‑101 (MQ=25)


               atatTT.GGGGC.AAGATGAAA.CCCATCCCTTT.CATCTTGCCCCAAATATCCCGGGGGGCC..C..GGGGGGCA.G.....CG.....C..CCCCCGCCACTTCAGCCACGGGGCAgcgc                                                                              >  2:818114/1‑101 (MQ=21)


               atatTT.GGGGC.AAGATGAAA.CCCATCCCTTT.CATCTTGCCCCAAATATCCCGGGGGGCC..C..GGGG.....GGC...CG.....CGACCCCCGCCACTTCCGCCACGGGGCAgcgc                                                                              >  2:1038688/1‑101 (MQ=21)


                    tgggggC.AAGA.AAAA.CCCCCCCCTTT.CCCCCTCCCCCAAAATCCCCGGGGGGCC..C..GGGG.....GGC...CGGCC..C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCg                                                                          <  2:3862991/99‑1 (MQ=255)


                    tgggggC.AAAATG.AA.CCCCCCCCCTT.CCTCTTTCCCCAAAATCCCCGGGGGGCC..C..GGGGGGCCAG.....CC.....C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCg                                                                          <  1:3482028/99‑1 (MQ=255)


                    t.GGGGCAAAGATAAAC.CCCCCCCCTTT.CTTCTTCCCCAAAATATCCGGGGGGCCC..G..GGGG.....GCC...CGCC...C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCg                                                                          <  2:2856948/101‑1 (MQ=9)


                    t.GGGGC.AAGATGAAA.CCCATCCCTTT.CATCTTGCCCCAAATATCCCGGGGGGCC..C..GGGGGGCA.G.....CG.....C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCgg                                                                         >  1:729171/1‑101 (MQ=25)


                    t.GGGGC.AAAGAGAAA.CCCCCCCCTTTCCCTCTTCCCCCAAATA.CCCGGGGGGCC..C..GGGGGGGCAG.....CC.....C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCg                                                                          <  2:1223608/101‑1 (MQ=255)


                     tgggcgaaaGATAAAC.CCCACCCCTTT.CATCTCGCCCAAAATA.CCCGGGGGGCC..CGGGGGG.....G.....CGGCC..C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCg                                                                          <  2:1207293/94‑1 (MQ=12)


                     gggggA.AAGATAAAC.CCCACCCTTTT.CATCTGCCCCAAAAGACCGGGGGGGGCG..G..GGGG.....GGCCC.CC.....C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCgg                                                                         <  2:3308683/100‑1 (MQ=255)


                      ggggC.AAAAAAAAA.CCCCCCCCTTT.TCTCCTGCCCCAAAATCCCCGGGGGGCC..CGGGGGG.....G.....CGCCC..C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCgg                                                                         <  1:2500847/101‑1 (MQ=255)


                          ggaaaaagAAC.CCCCTCCCTTT.TCTTTTCCCCCAAAATTCCGGGGGGGCC..C..GGGG.....GGGCCCCC.....C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCg                                                                      <  1:3154015/94‑1 (MQ=255)


                          c.AAGATGAAA.CCCATCCCTTT.CATCTTGCCCCAAATATCCCGGGGGGCC..C..GGGGGGCA.G.....CG.....C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGtt                                                                    >  1:3714772/1‑101 (MQ=21)


                          c.AAGATGAAA.CCCATCCCTTT.CATCTTGCCCCAAATATCCCGGGGGGCC..C..GGGGGGCA.G.....CG.....C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGtt                                                                    >  1:3197070/1‑101 (MQ=25)


                            aaGATGAAA.CCCATCCCTTT.CATCTTGCCCCAAATATCCCGGGGGGCC..C..GGGGGGCA.G.....CG.....C..CCCCCGCCACTTCCGCCACGGGTCAGCGCCCCGGCCGTTg                                                                   >  2:3801608/1‑101 (MQ=21)


                            aaGATGAAA.CCCATCCCTTT.CATCTTGCCCCAAATATCCCGGGGGGCC..C..GGGGGGCA.G.....CG.....C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTg                                                                   >  2:3148872/1‑101 (MQ=25)


                            aaGATGAAA.CCCATCCCTTT.CATCTTGCCCCAAATATCCCGGGGGGCC..C..GGGGGGCA.G.....CG.....C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTg                                                                   >  2:476050/1‑101 (MQ=25)


                             aGATGAAA.CCCATCCCTTT.CATCTTTCCCCAAATATCCCGGGGGGCC..C..GGGGGGCA.G.....CG.....C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGa                                                                  >  1:696071/1‑101 (MQ=21)


                              gATGAAA.CCCATCCCTTT.CATCTTGCCCCAAATATCCCGGGGGGCC..C..GGGGGGCA.G.....CG.....C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGAc                                                                 >  2:2111578/1‑101 (MQ=21)


                               aTGAAA.CCCATCCCTTT.CATCTTGCCCCAAATATCCCGGGGGGCC..C..GGGGGGCA.G.....CG.....C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACg                                                                >  1:2055857/1‑101 (MQ=21)


                                tGAAA.CCCATCCCTTT.CATCTTGCCCCAAATATCCCGGGGGGCC..C..GGGGGGCA.G.....CG.....C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGa                                                               >  1:1327950/1‑101 (MQ=25)


                                tGAAA.CCCATCCCTTT.CATCTTGCCCCAAATATCCCGGGGGGCC..C..GGGGGGCA.G.....CG.....C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGa                                                               >  1:229503/1‑101 (MQ=25)


                                 gAAA.CCCATCCCTTT.CATCTTGCCCCAAATATCCCGGGGGGCC..C..GGGGGGCA.G.....CG.....C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGaa                                                              >  1:2494886/1‑101 (MQ=25)


                                 gAAA.CCCATCCCTTT.CATCTTGCCCCAAATATCCCGGGGGGCC..C..GGGGGGCA.G.....CG.....C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGaa                                                              >  2:105336/1‑101 (MQ=25)


                                   aa.CCCATCCCTTT.CATCTTGCCCCAAATATCCCGGGGGGCC..C..GGGGGGCA.G.....CG.....C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAgg                                                            >  1:96620/1‑101 (MQ=25)


                                    a.CCCATCCCTTT.CATCTTGCCCCAAATATCCCGGGGGGCC..C..GGGGGGCA.G.....CG.....C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGga                                                           >  2:3396684/1‑101 (MQ=25)


                                        cATCCCTTT.CATCTTGCCCCAAATATCCCGGGGGGCC..C..GGGGGGCA.G.....CG.....C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGAc                                                        >  2:1430903/1‑101 (MQ=25)


                                         cccctttt.CCTCTTCCCCCAAATCCCCGGGGGGGCC..G..GGGG.....GCCCC.CC.....C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGAcc                                                       <  1:1254920/96‑1 (MQ=255)


                                         aTCCCTTT.CATCTTGCCCCAAATATCCCGGGGGGCC..C..GGGGGGCA.G.....CG.....C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGAcc                                                       >  1:1408632/1‑101 (MQ=25)


                                          tCCCTTT.CATCTTGCCCCAAATATCCCGGGGGGCC..C..GGGGGGCA.G.....CG.....C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACcg                                                      >  1:2684234/1‑101 (MQ=25)


                                          ccccTTT.CCCCCTCCCCAAAATCTCCCGGGGGGCC..C..GGGG.....GGGCCCCC.....C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGAcc                                                       <  1:218398/100‑1 (MQ=255)


                                           cccTTT.CATCTTGCCCCAAATATCCCGGGGGGCC..C..GGGGGGCA.G.....CG.....C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACcgc                                                     >  1:478407/1‑101 (MQ=25)


                                             cTTT.CATCTTGCCCCAAATATCCCGGGGGGCC..C..GGGGGGCA.G.....CG.....C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGa                                                   >  1:2484647/1‑101 (MQ=25)


                                              ttt.CATCTTGCCCCAAATATCCCGGGGGGCC..C..GGGGGGCA.G.....CG.....C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGAt                                                  >  1:2824194/1‑101 (MQ=25)


                                               tt.CATCTTGCCCCAAATATCCCGGGGGGCC..C..GGGGGGCA.G.....CG.....C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATg                                                 >  2:3563178/1‑101 (MQ=25)


                                               tt.CATCTTGCCCCAAATATCCCGGGGGGCC..C..GGGGGGCA.G.....CG.....C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATg                                                 >  1:1091080/1‑101 (MQ=25)


                                                t.CATCTTGCCCCAAATATCCCGGGGGGCC..C..GGGGGGCA.G.....CG.....C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGt                                                >  1:15707/1‑101 (MQ=25)


                                                t.CATCTTGCCCCAAATATCCCGGGGGGCC..C..GGGGGGCA.G.....CG.....C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGt                                                >  1:1838639/1‑101 (MQ=25)


                                                t.CATCTTGCCCCAAATATCCCGGGGGGCC..C..GGGGGGCA.G.....CG.....C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGt                                                >  1:2241139/1‑101 (MQ=25)


                                                  tccccccccccAAAATTCCGGGGGGGCC..C..GGGG.....GGCC..CGCC...C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGt                                                <  1:2660119/94‑1 (MQ=255)


                                                  cATCTTGCCCCAAATATCCCGGGGGGCC..C..GGGGGGCA.G.....CG.....C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATggt                                               >  1:980072/1‑99 (MQ=25)


                                                  cATCTTGCCCCAAATATCCCGGGGGGCC..C..GGGGGGCA.G.....CG.....C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGtt                                               >  1:204490/1‑101 (MQ=25)


                                                  cATCTTGCCCCAAATATCCCGGGGGGCC..C..GGGGGGCA.G.....CG.....C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGtt                                               >  2:1963307/1‑101 (MQ=25)


                                                  cATCTTGCCCCAAATATCCCGGGGGGCC..C..GGGGGGCA.G.....CG.....C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGtt                                               >  2:1814031/1‑101 (MQ=25)


                                                   aTCTTGCCCCAAATATCCCGGGGGGCC..C..GGGGGGCA.G.....CG.....C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGttt                                              >  1:3487541/1‑101 (MQ=25)


                                                    tCTTGCCCCAAATATCCCGGGGGGCC..C..GGGGGGCA.G.....CG.....C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTc                                             >  2:4220085/1‑101 (MQ=25)


                                                    tCTTGCCCCAAATATCCCGGGGGGCC..C..GGGGGGCA.G.....CG.....C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTc                                             >  2:3738016/1‑101 (MQ=25)


                                                    ctcccccccAAATCCCCGGGGGGGCC..C..GGGG.....G.....GGCCCCCC..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGttt                                              <  1:2248123/96‑1 (MQ=255)


                                                     cTTGCCCCAAATATCCCGGGGGGCC..C..GGGGGGCA.G.....CG.....C..CCCCCGCCACTTCCGCCACGGGGCAGCGCTCCGGCCGTTGACGAAGGAGACCGCGATGTTTCa                                            >  1:3643864/1‑101 (MQ=25)


                                                     cTTGCCCCAAATATCCCGGGGGGCC..C..GGGGGGCA.G.....CG.....C..CCCCCGCCACTTCCGCCACGAGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCa                                            >  2:1398167/1‑101 (MQ=25)


                                                       tGCCCCAAATATCCCGGGGGGCC..C..GGGGGGCA.G.....CG.....C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGCAGACCGCGATGTTTCaaa                                          >  1:4015837/1‑101 (MQ=25)


                                                             aaaTATCCCGGGGGGCC..C..GGGGGGCA.G.....CG.....C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATcc                                    >  1:939176/1‑101 (MQ=25)


                                                             aaaTATCCCGGGGGGCC..C..GGGGGGCA.G.....CG.....C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATcc                                    >  2:3708778/1‑101 (MQ=25)


                                                              aaTATCCCGGGGGGCC..C..GGGGGGCA.G.....CG.....C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCt                                   >  1:2303192/1‑101 (MQ=25)


                                                               atatCCCGGGGGGCC..C..GGGGGGCA.G.....CG.....C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTg                                  >  2:47642/1‑101 (MQ=37)


                                                               atatCCCGGGGGGCC..C..GGGGGGCA.G.....CG.....C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTg                                  >  1:2178667/1‑101 (MQ=37)


                                                                tatCCCGGGGGGCC..C..GGGGGGCA.G.....CG.....C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGTCGAAGGAGACCGCGATGTTTCAAAAGATCCTGa                                 >  1:3677459/1‑101 (MQ=25)


                                                                 atCCCGGGGGGCC..C..GGGGGGCA.G.....CG.....C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGAt                                >  2:2341522/1‑101 (MQ=37)


                                                                 atCCCGGGGGGCC..C..GGGGGGCA.G.....CG.....C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGAt                                >  1:4056427/1‑101 (MQ=37)


                                                                  tCCCGGGGGGCC..C..GGGG.....GGCCC.CG.....C..CCCCCCCCCCTTCCGCCGCGGGGCAACGCCCCCGCCGGTGTCGAAGCGGAGGCCGACGGTTCAAAAGATCCTGATc                               >  2:3688719/1‑101 (MQ=255)


                                                                   nccGGGGGGCC..C..GGGGGGCA.G.....CG.....C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCNGATcn                              >  1:963020/2‑100 (MQ=37)


                                                                    ccGGGGGGCC..C..GGGGGGCA.G.....CG.....C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCNGTTGACGAAGGNGACCGCGATGTNTCAAAAGATCCTGATCGc                             >  1:247721/1‑101 (MQ=37)


                                                                                  ccggggggcag.....cg.....c..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGc                    >  1:3313296/11‑101 (MQ=255)


                                                                                   cggggggcag.....cg.....c..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGcc                   >  2:1975314/10‑101 (MQ=255)


                                                                                    ggggggcag.....cg.....c..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCg                  >  2:4049892/9‑101 (MQ=255)


                                                                                    ggggggcag.....cg.....c..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCg                  >  2:1130248/9‑101 (MQ=255)


                                                                                       gggcag.....cg.....c..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCgaga               >  2:2053851/6‑101 (MQ=255)


                                                                                          cag.....cg.....c..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGATCg            >  2:306223/3‑101 (MQ=255)


                                                                                           ag.....cg.....c..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGATCGc           >  2:4070547/2‑101 (MQ=255)


                                                                                                  gccgcccc..cccccGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGAt              <  2:1066186/94‑1 (MQ=255)


                                                                                                  gcccgccc..cccccGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGAt              <  2:2546225/94‑1 (MQ=255)


                                                                                                  cg.....c..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGAAGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGATCGcgt         >  2:4206610/1‑99 (MQ=255)


                                                                                                   ccccccc..cccccGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGATc             <  2:2601584/95‑1 (MQ=255)


                                                                                                    cccccc..cccccGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTCTCAAAAGATCCTGATCGCCAACAGGGCCGAGATCg            <  2:1854003/96‑1 (MQ=255)


                                                                                                    cacccc..cccccGCCTCTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGATCg            <  2:3469544/96‑1 (MQ=255)


                                                                                                     cccac..ccccgGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGATCGc           <  2:2823975/97‑1 (MQ=255)


                                                                                                        cc..cccccGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGACACCGCGATGTTTCAAAAGATCCTGATCTCCAACAGGGCCGAGATCGCCTg        <  2:4156731/100‑1 (MQ=255)


                                                                                                         c..cccccGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGATCGCCTGt       >  1:1289056/1‑101 (MQ=255)


                                                                                                         c..cccccGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGATCGCCTGt       <  1:926952/101‑1 (MQ=255)


                                                                                                         c..cccccGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGATCGCCTGt       >  1:1538952/1‑101 (MQ=255)


                                                                                                         c..cccccGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGATCGCCTGt       <  2:3512532/101‑1 (MQ=255)


                                                                                                          cctccccGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGATCGCCTg        <  2:1808538/98‑1 (MQ=255)


                                                                                                            cccccGCCCCTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCAAGATCGCCTGTc      <  1:2289064/101‑1 (MQ=255)


                                                                                                            cccccGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGATCGCCTGTc      >  1:3576583/1‑101 (MQ=255)


                                                                                                            cccccGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGATCGCCTGTc      <  2:66469/101‑1 (MQ=255)


                                                                                                             ccccGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGATCGCCTgaga     >  1:1808657/1‑98 (MQ=255)


                                                                                                              cccGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGATCGCCTGTCgg    <  2:4188114/101‑1 (MQ=255)


                                                                                                               ccGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGATCGCCTGTCggg   >  1:3986817/1‑101 (MQ=255)


                                                                                                               ccGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGATCGCCTGTCggg   >  1:3484892/1‑101 (MQ=255)


                                                                                                                cGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGATCGCCTGTCGGGt  <  1:1123505/101‑1 (MQ=255)


ATGCCTCCGGCGGGGATATTT.GGGGC.AAGATGAAA.CCCATCCCTTT.CATCTTGCCCCAAATATCCCGGGGGGCC..C..GGGG.....G.....CG.....C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGATCGCCTGTCGGGT  >  NC_014034/1639927‑1640114

Base quality scores:


ATCG

< 3 ≤


ATCG

< 17 ≤


ATCG

< 25 ≤


ATCG

< 33 ≤


ATCG

< 40 ≤


ATCG