cmonkey
.patches
index
/home/weiju/Projects/ISB/cmonkey-python/cmonkey/patches.py
Modules
re
Functions
patch_mo_gene
(code, gene)
Microbes Online genes names that differ from RSAT names are
renamed here
patch_ncbi_taxonomy
(taxonomy_id)
patch for NCBI overrides:
patch_string_gene
(code, gene)
STRING names unfortunately can differ from RSAT as well
Data
KEGG_EXCEPTIONS
= {'Campylobacter jejuni NCTC11168': 'Campylobacter jejuni', 'Pseudomonas aeruginosa PAO1': 'Pseudomonas aeruginosa'}