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- print_job_info(inputfile, analysis, orgcode, reverse)
- print_job_info_htmlfile(inputfile, analysis, orgcode, reverse)
- print_job_info_weefile(inputfile, analysis, orgcode, reverse)
- run_adviser(inputfile, logfile)
- run_extra_analysis(inputfile, orgcode, max_results, reverse, multi, allseqs, ffdir)
- run_large_analysis(inputfile, orgcode, max_results, reverse, multi, allseqs, ffdir)
- run_medium_analysis(inputfile, orgcode, max_results, reverse, multi, allseqs, ffdir)
- run_small_analysis(inputfile, orgcode, max_results, reverse, multi, allseqs, ffdir)
- run_weederTFBS(inputfile, logfile, orgcode, motif_len, num_mutations, max_results, allseqs, reverse, multi, ffdir)
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