Module Functions 1 "Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase):Deoxyribose-phosphate aldolase:Universal stress protein UspA and related nucleotide-binding proteins:Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family:UDP-N-acetylmuramyl pentapeptide synthase:Alanine racemase:Glycosyltransferases, probably involved in cell wall biogenesis:Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain:Uncharacterized low-complexity proteins:Uncharacterized enzyme of thiazole biosynthesis:Predicted phosphoribosyltransferases:Uncharacterized protein conserved in bacteria:Cephalosporin hydroxylase:Lignostilbene-alpha,beta-dioxygenase and related enzymes:Response regulator containing a CheY-like receiver domain and a GGDEF domain:Uncharacterized protein conserved in bacteria:Predicted permease, DMT superfamily:Flp pilus assembly protein TadD, contains TPR repeats:Nucleotide transport and metabolism:Nucleotide transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Pentose phosphate pathway:Lysine biosynthesis:D-Alanine metabolism:Glutathione metabolism:Starch and sucrose metabolism:Peptidoglycan biosynthesis:Thiamine metabolism:Metabolic pathways:Secondary metabolites biosynthesis, transport and catabolism:Secondary metabolites biosynthesis, transport and catabolism:General function prediction only:General function prediction only:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:deoC:GGDEF:alr:murF:glut_syn:Intracellular trafficking, secretion, and vesicular transport:Intracellular trafficking, secretion, and vesicular transport:Defense mechanisms:Defense mechanisms:Other:Amino Acid Metabolism:Metabolism of Other Amino Acids:Glycan Biosynthesis and Metabolism:Metabolism of Cofactors and Vitamins:Metabolism:Metabolism:Global:Other:Glutathione and analogs:Other:Biosynthesis and degradation of murein sacculus and peptidoglycan:Energy metabolism:Biosynthesis of cofactors, prosthetic groups, and carriers:Signal transduction:Cell envelope:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Carbohydrate Metabolism:Amino Acid Metabolism:Metabolism of Other Amino Acids:Glycan Biosynthesis and Metabolism:Metabolism of Cofactors and Vitamins:Global:Metabolism:Energy metabolism:Other:Biosynthesis of cofactors, prosthetic groups, and carriers:Glutathione and analogs:Signal transduction:Carbohydrate Metabolism:Cell envelope:Biosynthesis and degradation of murein sacculus and peptidoglycan:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized" 2 "Predicted Co/Zn/Cd cation transporters:Chaperonin GroEL (HSP60 family):DnaJ-class molecular chaperone with C-terminal Zn finger domain:Serine/threonine protein kinase:Uncharacterized protein conserved in bacteria:Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain:FOG: CheY-like receiver:Holliday junction resolvasome, endonuclease subunit:ABC-type antimicrobial peptide transport system, ATPase component:16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases:Disulfide bond chaperones of the HSP33 family:DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog:Predicted transcriptional regulators:dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes:FOG: PAS/PAC domain:Uncharacterized conserved protein:Uncharacterized conserved protein:P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Cell motility:Cell motility:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Streptomycin biosynthesis:Polyketide sugar unit biosynthesis:Metabolic pathways:Biosynthesis of secondary metabolites:Two-component system:RNA degradation:RNA polymerase:Homologous recombination:General function prediction only:General function prediction only:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:TIGR00093:DNA_YbaB_EbfC:sensory_box:rmlC:CDF:GroEL:sigma70-ECF:heterocyst_DevA:Intracellular trafficking, secretion, and vesicular transport:Intracellular trafficking, secretion, and vesicular transport:Defense mechanisms:Defense mechanisms:Protein fate:Biosynthesis of Other Secondary Metabolites:Transcription:Folding Sorting and Degradation:Replication and Repair:Signal Transduction:Metabolism:Metabolism:Genetic Information Processing:Environmental Information Processing:Global:Small molecule interactions:tRNA and rRNA base modification:Protein folding and stabilization:Cations and iron carrying compounds:General:Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides:Regulatory functions:Protein synthesis:Protein fate:Transport and binding proteins:Unknown function:Cell envelope:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Metabolism of Terpenoids and Polyketides:Biosynthesis of Other Secondary Metabolites:Genetic Information Processing:Transcription:Folding Sorting and Degradation:Replication and Repair:Environmental Information Processing:Signal Transduction:Global:Metabolism:Regulatory functions:Small molecule interactions:Protein synthesis:tRNA and rRNA base modification:Metabolism of Terpenoids and Polyketides:Protein folding and stabilization:Transport and binding proteins:Cations and iron carrying compounds:Unknown function:General:Cell envelope:Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized" 3 "Cysteine synthase:Adenylosuccinate synthase:Dolichol kinase:Dihydropteroate synthase and related enzymes:tRNA-(guanine-N1)-methyltransferase:ABC-type dipeptide/oligopeptide/nickel transport systems, permease components:Predicted unusual protein kinase:Phosphopantetheine adenylyltransferase:Membrane proteins related to metalloendopeptidases:3-dehydroquinate dehydratase II:Acyl carrier protein phosphodiesterase:Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases:ABC-type sulfate transport system, periplasmic component:4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family:Molybdopterin converting factor, small subunit:Methylase involved in ubiquinone/menaquinone biosynthesis:Lipid A core - O-antigen ligase and related enzymes:Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit:Amino acid transport and metabolism:Amino acid transport and metabolism:Nucleotide transport and metabolism:Nucleotide transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Purine metabolism:Alanine aspartate and glutamate metabolism:Cysteine and methionine metabolism:Phenylalanine tyrosine and tryptophan biosynthesis:Selenocompound metabolism:Pantothenate and CoA biosynthesis:Folate biosynthesis:Sulfur metabolism:Metabolic pathways:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:ABC transporters:General function prediction only:General function prediction only:trmD:cyt_tran_rel:purA:2A73:3a0106s03:aroQ:apt:DHPS:moaD_arch:Purine ribonucleotide biosynthesis:Salvage of nucleosides and nucleotides:Protein synthesis:tRNA and rRNA base modification:Transport and binding proteins:Anions:Carbohydrates, organic alcohols, and acids:Amino acid biosynthesis:Aromatic amino acid family:Biosynthesis of cofactors, prosthetic groups, and carriers:Folic acid:Molybdopterin:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Cellular processes and signaling:Information storage and processing:Biosynthesis of cofactors, prosthetic groups, and carriers:Amino acid biosynthesis:Transport and binding proteins:Protein synthesis:Purines, pyrimidines, nucleosides, and nucleotides:Molybdopterin:Folic acid:Aromatic amino acid family:Carbohydrates, organic alcohols, and acids:Anions:tRNA and rRNA base modification:Salvage of nucleosides and nucleotides:Purine ribonucleotide biosynthesis:Global:Environmental Information Processing:Metabolism:Metabolism:Membrane Transport:Metabolism of Cofactors and Vitamins:Metabolism of Other Amino Acids:Amino Acid Metabolism:Amino Acid Metabolism:Nucleotide Metabolism:Nucleotide Metabolism:Energy Metabolism:Metabolism of Other Amino Acids:Metabolism:Metabolism of Cofactors and Vitamins:Poorly characterized:Metabolism:Environmental Information Processing:Membrane Transport:Global:Metabolism:Energy Metabolism:Purines, pyrimidines, nucleosides, and nucleotides" 4 "Energy production and conversion:Energy production and conversion:1-acyl-sn-glycerol-3-phosphate acyltransferase:Lipoate synthase:tRNA-(guanine-N1)-methyltransferase:Glutathione peroxidase:Predicted amidohydrolase:UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase:Serine/threonine protein phosphatase:Predicted thioesterase:NADH:ubiquinone oxidoreductase subunit 4 (chain M):ABC-type sulfate/molybdate transport systems, ATPase component:Acyl carrier protein phosphodiesterase:3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase:DNA uptake protein and related DNA-binding proteins:Secreted and surface protein containing fasciclin-like repeats:Rhodanese-related sulfurtransferase:Transposase and inactivated derivatives:Predicted signal transduction protein containing sensor and EAL domains:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Replication, recombination and repair:Replication, recombination and repair:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Ubiquinone and other terpenoid-quinone biosynthesis:Oxidative phosphorylation:Purine metabolism:Pyrimidine metabolism:Cysteine and methionine metabolism:Arginine and proline metabolism:Glutathione metabolism:Peptidoglycan biosynthesis:Arachidonic acid metabolism:Lipoic acid metabolism:Metabolic pathways:Biosynthesis of secondary metabolites:ABC transporters:Sulfur relay system:General function prediction only:General function prediction only:Signal transduction mechanisms:Signal transduction mechanisms:trmD:mazG:mraY:lipA:3a0106s01:NDH_I_M:Glycan Biosynthesis and Metabolism:Genetic Information Processing:Folding Sorting and Degradation:Metabolism of Other Amino Acids:Environmental Information Processing:Membrane Transport:Amino Acid Metabolism:Global:Metabolism:Nucleotide Metabolism:Lipid Metabolism:Energy Metabolism:Metabolism:Poorly characterized:Metabolism:Energy Metabolism:Energy metabolism:Electron transport:Protein synthesis:tRNA and rRNA base modification:Transport and binding proteins:Anions:Unknown function:General:Biosynthesis of cofactors, prosthetic groups, and carriers:Lipoate:Cell envelope:Biosynthesis and degradation of murein sacculus and peptidoglycan:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Cellular processes and signaling:Information storage and processing:Cell envelope:Biosynthesis of cofactors, prosthetic groups, and carriers:Unknown function:Transport and binding proteins:Protein synthesis:Energy metabolism:Biosynthesis and degradation of murein sacculus and peptidoglycan:Lipoate:General:Anions:tRNA and rRNA base modification:Electron transport:Global:Environmental Information Processing:Genetic Information Processing:Metabolism:Metabolism:Membrane Transport:Folding Sorting and Degradation:Metabolism of Cofactors and Vitamins:Glycan Biosynthesis and Metabolism:Metabolism of Other Amino Acids:Amino Acid Metabolism:Nucleotide Metabolism:Metabolism of Cofactors and Vitamins:Lipid Metabolism" 5 "Ribosomal protein S2:Isoleucyl-tRNA synthetase:DNA-directed RNA polymerase, beta' subunit/160 kD subunit:Ribosomal protein S3:Ribosomal protein L14:Ribosomal protein L6P/L9E:Ribosomal protein S17:Fructose/tagatose bisphosphate aldolase:Ribosomal protein L16/L10E:Ribosomal protein L24:Ribosomal protein L15:Co-chaperonin GroES (HSP10):Ribosomal protein L18:ABC-type transport system involved in Fe-S cluster assembly, ATPase component:Chaperonin GroEL (HSP60 family):Pyruvate kinase:Selenocysteine lyase:ATPases with chaperone activity, ATP-binding subunit:cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases:ABC-type transport system involved in Fe-S cluster assembly, permease component:Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase):Uncharacterized protein conserved in bacteria:Predicted membrane protein:Amino acid transport and metabolism:Amino acid transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Glycolysis / Gluconeogenesis:Pentose phosphate pathway:Fructose and mannose metabolism:Purine metabolism:Pyrimidine metabolism:Valine leucine and isoleucine biosynthesis:Selenocompound metabolism:Pyruvate metabolism:Methane metabolism:Carbon fixation in photosynthetic organisms:Thiamine metabolism:Aminoacyl-tRNA biosynthesis:Metabolic pathways:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Ribosome:RNA degradation:RNA polymerase:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:L18_bact:cbbA:ileS:rpsC_bact:rpsB_bact:pyruv_kin:rplN_bact:rplO_bact:rplX_bact:rplP_bact:sufC:sufS:sufB:sufD:GroEL:rpoC2_cyan:PS_antenn_a_b:polynuc_phos:S17_bact:L6_bact:Transcription:Genetic Information Processing:Metabolism of Cofactors and Vitamins:Metabolism of Other Amino Acids:Amino Acid Metabolism:Nucleotide Metabolism:Energy Metabolism:Carbohydrate Metabolism:Carbohydrate Metabolism:Energy metabolism:Glycolysis/gluconeogenesis:Photosynthesis:Transcription:Degradation of RNA:DNA-dependent RNA polymerase:Protein synthesis:tRNA aminoacylation:Ribosomal proteins: synthesis and modification:Protein fate:Protein folding and stabilization:Biosynthesis of cofactors, prosthetic groups, and carriers:Other:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Poorly characterized:Metabolism:Cellular processes and signaling:Information storage and processing:Biosynthesis of cofactors, prosthetic groups, and carriers:Protein fate:Protein synthesis:Transcription:Energy metabolism:Other:Protein folding and stabilization:Ribosomal proteins: synthesis and modification:tRNA aminoacylation:DNA-dependent RNA polymerase:Degradation of RNA:Photosynthesis:Glycolysis/gluconeogenesis:Global:Genetic Information Processing:Metabolism:Metabolism:Folding Sorting and Degradation:Translation:Transcription:Metabolism of Cofactors and Vitamins:Metabolism of Other Amino Acids:Amino Acid Metabolism:Nucleotide Metabolism:Metabolism:Energy Metabolism:Global:Folding Sorting and Degradation:Translation" 6 "Energy production and conversion:Energy production and conversion:Hydrogenase maturation factor:1-acyl-sn-glycerol-3-phosphate acyltransferase:Lactoylglutathione lyase and related lyases:Fructose-2,6-bisphosphatase:Hydrogenase maturation factor:RecA/RadA recombinase:CDP-diglyceride synthetase:Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake:Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases):ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains):Homoserine trans-succinylase:Large-conductance mechanosensitive channel:DNA repair proteins:Thermophilic glucose-6-phosphate isomerase and related metalloenzymes:K+-transporting ATPase, c chain:Na+/melibiose symporter and related transporters:High-affinity K+ transport system, ATPase chain B:Uncharacterized conserved protein:Peptidylarginine deiminase and related enzymes:Cytochrome c:ATP-dependent nuclease, subunit B:Phosphoketolase:Amino acid transport and metabolism:Amino acid transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Replication, recombination and repair:Replication, recombination and repair:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Glycolysis / Gluconeogenesis:Pentose phosphate pathway:Cysteine and methionine metabolism:Histidine metabolism:Tyrosine metabolism:Selenocompound metabolism:Glycerophospholipid metabolism:Polycyclic aromatic hydrocarbon degradation:Glyoxylate and dicarboxylate metabolism:Methane metabolism:Carbon fixation in photosynthetic organisms:Sulfur metabolism:Metabolic pathways:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Two-component system:Homologous recombination:Secondary metabolites biosynthesis, transport and catabolism:Secondary metabolites biosynthesis, transport and catabolism:General function prediction only:General function prediction only:Function unknown:Function unknown:hypD:hypF:mscL:radc:kdpC:dprA:gph:metA:ATPase_P-type:tigrfam_recA:bicupin_oxalic:poly_P_AMP_trns:Intracellular trafficking, secretion, and vesicular transport:Intracellular trafficking, secretion, and vesicular transport:Central intermediary metabolism:Energy Metabolism:Lipid Metabolism:Amino Acid Metabolism:Metabolism of Other Amino Acids:Xenobiotics Biodegradation and Metabolism:Replication and Repair:Signal Transduction:Metabolism:Metabolism:Genetic Information Processing:Environmental Information Processing:Global:Phosphorus compounds:DNA replication, recombination, and repair:Protein modification and repair:Carbohydrates, organic alcohols, and acids:Cations and iron carrying compounds:DNA transformation:Adaptations to atypical conditions:Aspartate family:Central intermediary metabolism:DNA metabolism:Protein fate:Transport and binding proteins:Cellular processes:Amino acid biosynthesis:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Carbohydrate Metabolism:Energy Metabolism:Lipid Metabolism:Amino Acid Metabolism:Metabolism of Other Amino Acids:Xenobiotics Biodegradation and Metabolism:Genetic Information Processing:Replication and Repair:Environmental Information Processing:Signal Transduction:Global:Metabolism:Carbohydrate Metabolism:Phosphorus compounds:DNA metabolism:DNA replication, recombination, and repair:Protein fate:Protein modification and repair:Transport and binding proteins:Carbohydrates, organic alcohols, and acids:Cations and iron carrying compounds:Cellular processes:DNA transformation:Adaptations to atypical conditions:Amino acid biosynthesis:Aspartate family:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized" 7 "Cysteine synthase:Glutamate decarboxylase and related PLP-dependent proteins:Triosephosphate isomerase:Zn-dependent oligopeptidases:Cytosine deaminase and related metal-dependent hydrolases:Transcriptional regulator:Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily):Lipoprotein signal peptidase:Predicted permease:High-affinity Fe2+/Pb2+ permease:ABC-type branched-chain amino acid transport systems, periplasmic component:ABC-type polar amino acid transport system, ATPase component:D-alanine-D-alanine ligase and related ATP-grasp enzymes:ABC-type transport system involved in resistance to organic solvents, periplasmic component:Predicted Rossmann fold nucleotide-binding protein:Predicted membrane protein:ABC-type phosphate/phosphonate transport system, permease component:Uncharacterized protein involved in cation transport:ABC-type branched-chain amino acid transport system, permease component:ABC-type amino acid transport system, permease component:Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit:Amino acid transport and metabolism:Amino acid transport and metabolism:Nucleotide transport and metabolism:Nucleotide transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Transcription:Transcription:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Glycolysis / Gluconeogenesis:Fructose and mannose metabolism:Pyrimidine metabolism:Cysteine and methionine metabolism:Arginine and proline metabolism:Selenocompound metabolism:D-Alanine metabolism:Peptidoglycan biosynthesis:Inositol phosphate metabolism:Carbon fixation in photosynthetic organisms:Sulfur metabolism:Metabolic pathways:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:ABC transporters:Protein export:Secondary metabolites biosynthesis, transport and catabolism:Secondary metabolites biosynthesis, transport and catabolism:General function prediction only:General function prediction only:Function unknown:Function unknown:lspA:TIGR00341:tim:D_ala_D_alaTIGR:HEQRo_perm_3TM:Intracellular trafficking, secretion, and vesicular transport:Intracellular trafficking, secretion, and vesicular transport:Glycolysis/gluconeogenesis:Energy Metabolism:Nucleotide Metabolism:Amino Acid Metabolism:Metabolism of Other Amino Acids:Glycan Biosynthesis and Metabolism:Folding Sorting and Degradation:Membrane Transport:Metabolism:Metabolism:Genetic Information Processing:Environmental Information Processing:Global:Glycolysis/gluconeogenesis:Protein and peptide secretion and trafficking:Amino acids, peptides and amines:Conserved:Biosynthesis and degradation of murein sacculus and peptidoglycan:Energy metabolism:Protein fate:Transport and binding proteins:Hypothetical proteins:Cell envelope:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Carbohydrate Metabolism:Energy Metabolism:Nucleotide Metabolism:Amino Acid Metabolism:Metabolism of Other Amino Acids:Glycan Biosynthesis and Metabolism:Genetic Information Processing:Folding Sorting and Degradation:Environmental Information Processing:Membrane Transport:Global:Metabolism:Energy metabolism:Carbohydrate Metabolism:Protein fate:Protein and peptide secretion and trafficking:Transport and binding proteins:Amino acids, peptides and amines:Hypothetical proteins:Conserved:Cell envelope:Biosynthesis and degradation of murein sacculus and peptidoglycan:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized" 8 "Energy production and conversion:Energy production and conversion:Translation initiation factor 1 (eIF-1/SUI1) and related proteins:Chloride channel protein EriC:3-isopropylmalate dehydratase small subunit:Superfamily I DNA and RNA helicases:Protein chain release factor A:Predicted metal-dependent hydrolase:DnaJ-class molecular chaperone with C-terminal Zn finger domain:Signal transduction histidine kinase:Predicted ATPase or kinase:ADP-ribose pyrophosphatase:Fe-S-cluster-containing hydrogenase components 2:Teichoic acid biosynthesis proteins:ATP:corrinoid adenosyltransferase:Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain:Uncharacterized protein conserved in bacteria:Predicted integral membrane protein:Amino acid transport and metabolism:Amino acid transport and metabolism:Nucleotide transport and metabolism:Nucleotide transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Purine metabolism:Valine leucine and isoleucine biosynthesis:C5-Branched dibasic acid metabolism:Porphyrin and chlorophyll metabolism:Metabolic pathways:Biosynthesis of secondary metabolites:Nucleotide excision repair:Mismatch repair:General function prediction only:General function prediction only:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:prfB:TIGR00043:HI0065_YjeE:leuD:wecG_tagA_cpsF:pcrA:Unknown function:Enzymes of unknown specificity:Amino acid biosynthesis:Pyruvate family:Cell envelope:Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Poorly characterized:Metabolism:Cellular processes and signaling:Information storage and processing:Cell envelope:Amino acid biosynthesis:Unknown function:Protein synthesis:DNA metabolism:Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides:Pyruvate family:Enzymes of unknown specificity:Translation factors:Other:DNA replication, recombination, and repair:Global:Genetic Information Processing:Metabolism:Metabolism:Replication and Repair:Metabolism of Cofactors and Vitamins:Amino Acid Metabolism:Nucleotide Metabolism:Nucleotide Metabolism:Amino Acid Metabolism:Carbohydrate Metabolism:Metabolism of Cofactors and Vitamins:Metabolism:Genetic Information Processing:Replication and Repair:Global:Metabolism:Carbohydrate Metabolism:DNA metabolism:DNA replication, recombination, and repair:Protein synthesis:Other:Translation factors" 9 "Glutathione peroxidase:RecA/RadA recombinase:Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain:Putative GTPases (G3E family):Predicted phosphatases:Type I site-specific restriction-modification system, R (restriction) subunit and related helicases:Esterase/lipase:Sulfate permease and related transporters (MFS superfamily):Glycine/D-amino acid oxidases (deaminating):Restriction endonuclease S subunits:Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain:Collagenase and related proteases:ABC-type antimicrobial peptide transport system, ATPase component:Zn-dependent proteases:Chromate transport protein ChrA:Uncharacterized conserved protein:Uncharacterized conserved protein:FOG: GGDEF domain:Uncharacterized conserved protein:Plasmid maintenance system antidote protein:Uncharacterized protein conserved in bacteria:Uncharacterized protein conserved in cyanobacteria:Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain:Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives:Amino acid transport and metabolism:Amino acid transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Glutathione metabolism:Arachidonic acid metabolism:Thiamine metabolism:Porphyrin and chlorophyll metabolism:Two-component system:Homologous recombination:Sulfur relay system:General function prediction only:General function prediction only:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:sensory_box:GGDEF:trmU:2A51:tigrfam_recA:gshA_cyano:thiamin_ThiO:CobW:antidote_HigA:heterocyst_DevA:Defense mechanisms:Defense mechanisms:Other:Metabolism of Other Amino Acids:Metabolism of Cofactors and Vitamins:Folding Sorting and Degradation:Replication and Repair:Signal Transduction:Metabolism:Genetic Information Processing:Environmental Information Processing:Small molecule interactions:DNA replication, recombination, and repair:tRNA and rRNA base modification:Anions:Other:Heme, porphyrin, and cobalamin:Glutathione and analogs:Thiamine:Other:Regulatory functions:DNA metabolism:Protein synthesis:Transport and binding proteins:Mobile and extrachromosomal element functions:Biosynthesis of cofactors, prosthetic groups, and carriers:Signal transduction:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Lipid Metabolism:Metabolism of Other Amino Acids:Metabolism of Cofactors and Vitamins:Genetic Information Processing:Folding Sorting and Degradation:Replication and Repair:Environmental Information Processing:Signal Transduction:Regulatory functions:Small molecule interactions:DNA metabolism:DNA replication, recombination, and repair:Protein synthesis:tRNA and rRNA base modification:Transport and binding proteins:Anions:Mobile and extrachromosomal element functions:Lipid Metabolism:Biosynthesis of cofactors, prosthetic groups, and carriers:Heme, porphyrin, and cobalamin:Glutathione and analogs:Thiamine:Signal transduction:Other:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized" 10 "Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division:Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases:ATP-dependent Zn proteases:Serine/threonine protein kinase:Predicted phosphatases:Pseudouridylate synthases, 23S RNA-specific:Transcriptional regulator:Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily):Single-stranded DNA-binding protein:Serine/threonine protein phosphatase:Chemotaxis signal transduction protein:Predicted membrane protein:FOG: GGDEF domain:Tfp pilus assembly protein, pilus retraction ATPase PilT:Beta-1,4-xylanase:Uncharacterized copper-binding protein:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Cell motility:Cell motility:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Glycolysis / Gluconeogenesis:Ubiquinone and other terpenoid-quinone biosynthesis:Pyruvate metabolism:Propanoate metabolism:Methane metabolism:Carbon fixation pathways in prokaryotes:Metabolic pathways:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Two-component system:General function prediction only:General function prediction only:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:gidB:GGDEF:FtsH_fam:pilT_fam:Ac_CoA_lig_AcsA:Intracellular trafficking, secretion, and vesicular transport:Intracellular trafficking, secretion, and vesicular transport:Cellular processes and signaling:Metabolism:Poorly characterized:Carbohydrate Metabolism:Metabolism:Poorly characterized:Metabolism:Cellular processes and signaling:Information storage and processing:Signal transduction:Cellular processes:Protein fate:Protein synthesis:Other:Chemotaxis and motility:Degradation of proteins, peptides, and glycopeptides:tRNA and rRNA base modification:Global:Environmental Information Processing:Metabolism:Metabolism:Signal Transduction:Metabolism of Cofactors and Vitamins:Metabolism of Cofactors and Vitamins:Energy Metabolism:Energy Metabolism:Environmental Information Processing:Signal Transduction:Global:Metabolism:Carbohydrate Metabolism:Protein synthesis:tRNA and rRNA base modification:Protein fate:Degradation of proteins, peptides, and glycopeptides:Cellular processes:Chemotaxis and motility:Signal transduction:Other:Information storage and processing" 11 "Energy production and conversion:Energy production and conversion:Predicted sugar kinase:Hydrogenase maturation factor:Acetate kinase:Zn finger protein HypA/HybF (possibly regulating hydrogenase expression):Predicted Na+-dependent transporter:Hydrogenase maturation factor:Predicted transcriptional regulators:Predicted membrane metal-binding protein:Restriction endonuclease S subunits:Diacylglycerol kinase:Putative transcription activator:GTPase:ABC-type sugar transport systems, permease components:Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase):ABC-type sugar transport system, periplasmic component:Pirin-related protein:Homoserine trans-succinylase:Nitrate/nitrite transporter:Uncharacterized conserved protein:Arabinose efflux permease:Predicted transmembrane sensor domain:Uncharacterized conserved protein:Amino acid transport and metabolism:Amino acid transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Purine metabolism:Pyrimidine metabolism:Cysteine and methionine metabolism:Taurine and hypotaurine metabolism:Glycerolipid metabolism:Glycerophospholipid metabolism:Pyruvate metabolism:Propanoate metabolism:Methane metabolism:Carbon fixation pathways in prokaryotes:Thiamine metabolism:Nicotinate and nicotinamide metabolism:Sulfur metabolism:Metabolic pathways:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:RNA degradation:General function prediction only:General function prediction only:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:ackA:hypD:hypA:hypF:small_GTP:ComEC_N-term:metA:TIGR02652:polynuc_phos:poly_P_AMP_trns:Defense mechanisms:Defense mechanisms:Phosphorus compounds:Energy Metabolism:Lipid Metabolism:Nucleotide Metabolism:Amino Acid Metabolism:Metabolism of Other Amino Acids:Metabolism of Cofactors and Vitamins:Folding Sorting and Degradation:Metabolism:Metabolism:Genetic Information Processing:Global:Phosphorus compounds:Fermentation:Degradation of RNA:Protein modification and repair:Conserved:General:Aspartate family:Central intermediary metabolism:Energy metabolism:Transcription:Protein fate:Hypothetical proteins:Unknown function:Amino acid biosynthesis:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Carbohydrate Metabolism:Energy Metabolism:Lipid Metabolism:Nucleotide Metabolism:Amino Acid Metabolism:Metabolism of Other Amino Acids:Metabolism of Cofactors and Vitamins:Genetic Information Processing:Folding Sorting and Degradation:Global:Metabolism:Central intermediary metabolism:Carbohydrate Metabolism:Energy metabolism:Fermentation:Transcription:Degradation of RNA:Protein fate:Protein modification and repair:Hypothetical proteins:Conserved:Unknown function:General:Amino acid biosynthesis:Aspartate family:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized" 12 "Energy production and conversion:Energy production and conversion:Ribosomal protein S7:Site-specific DNA methylase:Protein-tyrosine-phosphatase:NAD/FAD-utilizing enzyme apparently involved in cell division:UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase:Na+/proline symporter:Sec-independent protein secretion pathway component TatC:ABC-type amino acid transport/signal transduction systems, periplasmic component/domain:NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit:ADP-ribosylglycohydrolase:Multidrug resistance efflux pump:Cytochrome c, mono- and diheme variants:Arabinose efflux permease:Uncharacterized conserved protein:Predicted dioxygenase of extradiol dioxygenase family:Uncharacterized protein conserved in bacteria:Cell cycle control, cell division, chromosome partitioning:Cell cycle control, cell division, chromosome partitioning:Amino acid transport and metabolism:Amino acid transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Replication, recombination and repair:Replication, recombination and repair:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Oxidative phosphorylation:Cysteine and methionine metabolism:Carotenoid biosynthesis:Metabolic pathways:Biosynthesis of secondary metabolites:Ribosome:Protein export:Bacterial secretion system:General function prediction only:General function prediction only:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:gidA:dcm:tatC:rpsG_bact:NDH_I_L:phytoene_desat:heterocyst_DevB:Intracellular trafficking, secretion, and vesicular transport:Intracellular trafficking, secretion, and vesicular transport:Defense mechanisms:Defense mechanisms:DNA metabolism:Amino Acid Metabolism:Metabolism of Terpenoids and Polyketides:Translation:Folding Sorting and Degradation:Membrane Transport:Metabolism:Metabolism:Genetic Information Processing:Environmental Information Processing:Global:Electron transport:DNA replication, recombination, and repair:Ribosomal proteins: synthesis and modification:tRNA and rRNA base modification:Protein and peptide secretion and trafficking:Other:Energy metabolism:DNA metabolism:Protein synthesis:Protein fate:Biosynthesis of cofactors, prosthetic groups, and carriers:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Energy Metabolism:Amino Acid Metabolism:Metabolism of Terpenoids and Polyketides:Genetic Information Processing:Translation:Folding Sorting and Degradation:Environmental Information Processing:Membrane Transport:Global:Metabolism:Energy metabolism:Electron transport:Energy Metabolism:DNA replication, recombination, and repair:Protein synthesis:Ribosomal proteins: synthesis and modification:tRNA and rRNA base modification:Protein fate:Protein and peptide secretion and trafficking:Biosynthesis of cofactors, prosthetic groups, and carriers:Other:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized" 13 "Undecaprenyl pyrophosphate synthase:ABC-type antimicrobial peptide transport system, permease component:DNA polymerase III, alpha subunit:Predicted metal-dependent phosphoesterases (PHP family):Chemotaxis protein histidine kinase and related kinases:Phosphopantetheine adenylyltransferase:ABC-type transport system involved in resistance to organic solvents, permease component:Cell division protein FtsI/penicillin-binding protein 2:Predicted amidophosphoribosyltransferases:ATPases involved in chromosome partitioning:Peroxiredoxin:Intein/homing endonuclease:Restriction endonuclease:Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases:Multidrug resistance efflux pump:Uncharacterized conserved protein:ATP:corrinoid adenosyltransferase:Methylase involved in ubiquinone/menaquinone biosynthesis:Rhodanese-related sulfurtransferase:Uncharacterized protein conserved in bacteria:Cell cycle control, cell division, chromosome partitioning:Cell cycle control, cell division, chromosome partitioning:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Replication, recombination and repair:Replication, recombination and repair:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Cell motility:Cell motility:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Purine metabolism:Pyrimidine metabolism:Cysteine and methionine metabolism:Peptidoglycan biosynthesis:Pantothenate and CoA biosynthesis:Porphyrin and chlorophyll metabolism:Terpenoid backbone biosynthesis:Metabolic pathways:Biosynthesis of secondary metabolites:Two-component system:DNA replication:Mismatch repair:Homologous recombination:Sulfur relay system:Secondary metabolites biosynthesis, transport and catabolism:Secondary metabolites biosynthesis, transport and catabolism:General function prediction only:General function prediction only:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:uppS:TIGR00056:cyt_tran_rel:TIGR00159:polc:devC:intein_Cterm:heterocyst_DevB:Defense mechanisms:Defense mechanisms:DNA metabolism:Amino Acid Metabolism:Glycan Biosynthesis and Metabolism:Metabolism of Cofactors and Vitamins:Metabolism of Terpenoids and Polyketides:Folding Sorting and Degradation:Replication and Repair:Signal Transduction:Metabolism:Metabolism:Genetic Information Processing:Environmental Information Processing:Global:DNA replication, recombination, and repair:Other:Conserved:Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides:DNA metabolism:Transport and binding proteins:Hypothetical proteins:Cell envelope:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Nucleotide Metabolism:Amino Acid Metabolism:Glycan Biosynthesis and Metabolism:Metabolism of Cofactors and Vitamins:Metabolism of Terpenoids and Polyketides:Genetic Information Processing:Folding Sorting and Degradation:Replication and Repair:Environmental Information Processing:Signal Transduction:Global:Metabolism:Nucleotide Metabolism:DNA replication, recombination, and repair:Transport and binding proteins:Other:Hypothetical proteins:Conserved:Cell envelope:Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized" 14 "Energy production and conversion:Energy production and conversion:Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase):EMAP domain:Dethiobiotin synthetase:Phosphoribosylaminoimidazole (AIR) synthetase:Malic enzyme:Orotate phosphoribosyltransferase:Isocitrate/isopropylmalate dehydrogenase:Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family:Branched-chain amino acid ABC-type transport system, permease components:Uncharacterized membrane-associated protein:Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily):Prolipoprotein diacylglyceryltransferase:ABC-type branched-chain amino acid transport systems, periplasmic component:Predicted permeases:Flavodoxins:N6-adenine-specific methylase:Predicted membrane protein:Na+/melibiose symporter and related transporters:ABC-type uncharacterized transport system, ATPase component:ABC-type uncharacterized transport system, permease component:Amino acid transport and metabolism:Amino acid transport and metabolism:Nucleotide transport and metabolism:Nucleotide transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Replication, recombination and repair:Replication, recombination and repair:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Purine metabolism:Pyrimidine metabolism:Valine leucine and isoleucine biosynthesis:Streptomycin biosynthesis:Inositol phosphate metabolism:Pyruvate metabolism:Biotin metabolism:Metabolic pathways:Biosynthesis of secondary metabolites:ABC transporters:Two-component system:General function prediction only:General function prediction only:Function unknown:Function unknown:TIGR00095:leuB:pyrE:bioD:lgt:purM:purK:flav_long:chap_CsaA:PS_antenn_a_b:Electron transport:Photosynthesis:Purines, pyrimidines, nucleosides, and nucleotides:Purine ribonucleotide biosynthesis:Pyrimidine ribonucleotide biosynthesis:Protein synthesis:tRNA and rRNA base modification:Protein fate:Protein and peptide secretion and trafficking:Protein modification and repair:Amino acid biosynthesis:Pyruvate family:Biosynthesis of cofactors, prosthetic groups, and carriers:Biotin:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Biosynthesis of cofactors, prosthetic groups, and carriers:Amino acid biosynthesis:Protein fate:Protein synthesis:Purines, pyrimidines, nucleosides, and nucleotides:Energy metabolism:Biotin:Pyruvate family:Protein modification and repair:Protein and peptide secretion and trafficking:tRNA and rRNA base modification:Pyrimidine ribonucleotide biosynthesis:Purine ribonucleotide biosynthesis:Photosynthesis:Electron transport:Global:Environmental Information Processing:Metabolism:Metabolism:Signal Transduction:Membrane Transport:Biosynthesis of Other Secondary Metabolites:Metabolism of Cofactors and Vitamins:Amino Acid Metabolism:Carbohydrate Metabolism:Nucleotide Metabolism:Nucleotide Metabolism:Metabolism:Poorly characterized:Amino Acid Metabolism:Metabolism:Metabolism of Cofactors and Vitamins:Cellular processes and signaling:Biosynthesis of Other Secondary Metabolites:Information storage and processing:Environmental Information Processing:Membrane Transport:Signal Transduction:Global:Metabolism:Carbohydrate Metabolism:Energy metabolism" 15 "Ammonia permease:1-acyl-sn-glycerol-3-phosphate acyltransferase:Dihydropteroate synthase and related enzymes:Predicted ATPase:Acetyltransferases:Serine/threonine protein kinase:Pseudouridylate synthases, 23S RNA-specific:DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32):Mg2+ and Co2+ transporters:Predicted transcriptional regulators:Predicted dehydrogenases and related proteins:Na+/H+ antiporter NhaD and related arsenite permeases:HD superfamily phosphohydrolases:ABC-type sugar transport systems, permease components:Primosomal protein N' (replication factor Y) - superfamily II helicase:Metal-dependent hydrolases of the beta-lactamase superfamily III:Hemolysins and related proteins containing CBS domains:Transglutaminase-like enzymes, putative cysteine proteases:Dihydroneopterin aldolase:Uncharacterized conserved protein:Predicted RNA-binding protein (contains KH domain):Uncharacterized conserved protein:Sporulation protein and related proteins:Tfp pilus assembly protein PilF:Glycogen debranching enzyme:ABC-type sugar transport systems, ATPase components:Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit:Cell cycle control, cell division, chromosome partitioning:Cell cycle control, cell division, chromosome partitioning:Amino acid transport and metabolism:Amino acid transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Cell motility:Cell motility:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Folate biosynthesis:Metabolic pathways:ABC transporters:RNA polymerase:Homologous recombination:General function prediction only:General function prediction only:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:rluA_subfam:corA:folB:priA:amt:DHPS:gde_arch:RNase_Z:SpoIID_LytB:sigma70-ECF:Intracellular trafficking, secretion, and vesicular transport:Intracellular trafficking, secretion, and vesicular transport:Biosynthesis of cofactors, prosthetic groups, and carriers:Transcription:Replication and Repair:Membrane Transport:Metabolism:Metabolism:Genetic Information Processing:Environmental Information Processing:Global:Biosynthesis and degradation of polysaccharides:DNA replication, recombination, and repair:RNA processing:tRNA and rRNA base modification:Cations and iron carrying compounds:General:Folic acid:Energy metabolism:DNA metabolism:Transcription:Protein synthesis:Transport and binding proteins:Unknown function:Biosynthesis of cofactors, prosthetic groups, and carriers:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Metabolism of Cofactors and Vitamins:Genetic Information Processing:Transcription:Replication and Repair:Environmental Information Processing:Membrane Transport:Global:Metabolism:Energy metabolism:Biosynthesis and degradation of polysaccharides:DNA metabolism:DNA replication, recombination, and repair:Transcription:RNA processing:Protein synthesis:tRNA and rRNA base modification:Transport and binding proteins:Cations and iron carrying compounds:Unknown function:General:Metabolism of Cofactors and Vitamins:Folic acid:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized" 16 "Energy production and conversion:Energy production and conversion:Adenylosuccinate synthase:Glycine/serine hydroxymethyltransferase:7-keto-8-aminopelargonate synthetase and related enzymes:Conserved domain frequently associated with peptide methionine sulfoxide reductase:Replicative DNA helicase:Orotate phosphoribosyltransferase:ATPase components of ABC transporters with duplicated ATPase domains:Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily):Single-stranded DNA-specific exonuclease:Predicted sugar phosphate isomerase involved in capsule formation:Nicotinic acid mononucleotide adenylyltransferase:Zn-dependent alcohol dehydrogenases, class III:Cellulase M and related proteins:Dipeptidyl aminopeptidases/acylaminoacyl-peptidases:Adenosine deaminase:Peptidylarginine deiminase and related enzymes:4-hydroxybenzoate synthetase (chorismate lyase):Uncharacterized protein conserved in bacteria:Predicted dienelactone hydrolase:Uncharacterized conserved protein:Amino acid transport and metabolism:Amino acid transport and metabolism:Nucleotide transport and metabolism:Nucleotide transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Replication, recombination and repair:Replication, recombination and repair:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Glycolysis / Gluconeogenesis:Fatty acid metabolism:Purine metabolism:Pyrimidine metabolism:Alanine aspartate and glutamate metabolism:Glycine serine and threonine metabolism:Tyrosine metabolism:Cyanoamino acid metabolism:Chloroalkane and chloroalkene degradation:Naphthalene degradation:One carbon pool by folate:Methane metabolism:Nicotinate and nicotinamide metabolism:Biotin metabolism:Metabolic pathways:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:DNA replication:Base excision repair:Mismatch repair:Homologous recombination:General function prediction only:General function prediction only:Function unknown:Function unknown:purA:pyrE:TIGR00357:kpsF:recJ:DnaB:adh_III_F_hyde:Global:Replication and Repair:Genetic Information Processing:Xenobiotics Biodegradation and Metabolism:Metabolism of Cofactors and Vitamins:Metabolism of Other Amino Acids:Amino Acid Metabolism:Nucleotide Metabolism:Carbohydrate Metabolism:Energy metabolism:Fermentation:Sugars:Purines, pyrimidines, nucleosides, and nucleotides:Purine ribonucleotide biosynthesis:Pyrimidine ribonucleotide biosynthesis:DNA metabolism:DNA replication, recombination, and repair:Cellular processes:Adaptations to atypical conditions:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Lipid Metabolism:Energy Metabolism:Carbohydrate Metabolism:Metabolism:Poorly characterized:Metabolism:Cellular processes and signaling:Information storage and processing:Cellular processes:DNA metabolism:Purines, pyrimidines, nucleosides, and nucleotides:Energy metabolism:Adaptations to atypical conditions:DNA replication, recombination, and repair:Pyrimidine ribonucleotide biosynthesis:Purine ribonucleotide biosynthesis:Sugars:Fermentation:Global:Genetic Information Processing:Metabolism:Metabolism:Replication and Repair:Xenobiotics Biodegradation and Metabolism:Metabolism of Cofactors and Vitamins:Metabolism of Other Amino Acids:Amino Acid Metabolism:Nucleotide Metabolism:Lipid Metabolism:Metabolism:Energy Metabolism" 17 "Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase:Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase:Dethiobiotin synthetase:Anthranilate/para-aminobenzoate synthases component I:Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis:Cytidine deaminase:Glycosyltransferase:ABC-type nitrate/sulfonate/bicarbonate transport system, permease component:Predicted PP-loop superfamily ATPase:Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily:Apolipoprotein N-acyltransferase:Beta-glucosidase-related glycosidases:Predicted phosphoribosyltransferases:Uncharacterized iron-regulated protein:Uncharacterized protein conserved in bacteria:Uncharacterized conserved protein:Amino acid transport and metabolism:Amino acid transport and metabolism:Nucleotide transport and metabolism:Nucleotide transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Pyrimidine metabolism:Cyanoamino acid metabolism:Starch and sucrose metabolism:Biotin metabolism:Folate biosynthesis:Metabolic pathways:Biosynthesis of secondary metabolites:ABC transporters:General function prediction only:General function prediction only:Function unknown:Function unknown:TIGR00006:bioD:TIGR00364:lnt:pabB:L_thr_O3P_dcar:ntrB:TIGR03492:Protein fate:Protein modification and repair:Transport and binding proteins:Anions:Unknown function:General:Biosynthesis of cofactors, prosthetic groups, and carriers:Biotin:Folic acid:Heme, porphyrin, and cobalamin:Cell envelope:Biosynthesis and degradation of murein sacculus and peptidoglycan:Cellular processes and signaling:Metabolism:Poorly characterized:Cell envelope:Biosynthesis of cofactors, prosthetic groups, and carriers:Unknown function:Transport and binding proteins:Protein fate:Biosynthesis and degradation of murein sacculus and peptidoglycan:Heme, porphyrin, and cobalamin:Folic acid:Biotin:General:Anions:Protein modification and repair:Global:Environmental Information Processing:Metabolism:Metabolism:Membrane Transport:Metabolism of Cofactors and Vitamins:Metabolism of Other Amino Acids:Nucleotide Metabolism:Nucleotide Metabolism:Carbohydrate Metabolism:Metabolism of Other Amino Acids:Metabolism:Metabolism of Cofactors and Vitamins:Poorly characterized:Metabolism:Environmental Information Processing:Membrane Transport:Global:Metabolism:Cellular processes and signaling:Carbohydrate Metabolism" 18 "Phosphate/sulphate permeases:Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II:Predicted integral membrane protein:ABC-type branched-chain amino acid transport systems, ATPase component:Lipoprotein signal peptidase:ABC-type nitrate/sulfonate/bicarbonate transport system, permease component:Sugar (pentulose and hexulose) kinases:Phytoene dehydrogenase and related proteins:Homoserine acetyltransferase:Uncharacterized protein conserved in bacteria:ABC-type branched-chain amino acid transport system, permease component:ABC-type sulfate transport system, permease component:Uncharacterized protein conserved in bacteria:Amino acid transport and metabolism:Amino acid transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Ubiquinone and other terpenoid-quinone biosynthesis:Cysteine and methionine metabolism:Sulfur metabolism:Metabolic pathways:Biosynthesis of secondary metabolites:ABC transporters:Protein export:Secondary metabolites biosynthesis, transport and catabolism:Secondary metabolites biosynthesis, transport and catabolism:Function unknown:Function unknown:lspA:TIGR00374:3a0106s02:ntrB:TIGR03492:Intracellular trafficking, secretion, and vesicular transport:Intracellular trafficking, secretion, and vesicular transport:Metabolism:Environmental Information Processing:Folding Sorting and Degradation:Genetic Information Processing:Metabolism of Cofactors and Vitamins:Amino Acid Metabolism:Energy Metabolism:Energy Metabolism:Protein fate:Protein and peptide secretion and trafficking:Transport and binding proteins:Anions:Hypothetical proteins:Conserved:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Poorly characterized:Metabolism:Cellular processes and signaling:Hypothetical proteins:Transport and binding proteins:Protein fate:Conserved:Anions:Protein and peptide secretion and trafficking:Global:Environmental Information Processing:Genetic Information Processing:Metabolism:Metabolism:Membrane Transport:Folding Sorting and Degradation:Metabolism of Cofactors and Vitamins:Membrane Transport:Amino Acid Metabolism:Global" 19 "Energy production and conversion:Energy production and conversion:Ammonia permease:DNA-directed RNA polymerase, beta subunit/140 kD subunit:DNA-directed RNA polymerase, beta' subunit/160 kD subunit:Acetate kinase:ABC-type sugar transport system, permease component:Nucleoside-diphosphate-sugar epimerases:Phosphopantothenoylcysteine synthetase/decarboxylase:FOG: CBS domain:Glycine/D-amino acid oxidases (deaminating):ABC-type sugar transport systems, permease components:Nitrogenase subunit NifH (ATPase):Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes:Site-specific recombinases, DNA invertase Pin homologs:Uncharacterized conserved protein:DnaJ-class molecular chaperone:Methylase involved in ubiquinone/menaquinone biosynthesis:Uncharacterized protein conserved in bacteria:Uncharacterized conserved protein:Uncharacterized protein conserved in bacteria:Nitrogenase molybdenum-iron protein, alpha and beta chains:Penicillin V acylase and related amidases:ABC-type sugar transport systems, ATPase components:Predicted ATP-binding protein involved in virulence:Predicted transmembrane sensor domain:Amino acid transport and metabolism:Amino acid transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Secondary bile acid biosynthesis:Purine metabolism:Pyrimidine metabolism:Taurine and hypotaurine metabolism:Pyruvate metabolism:Propanoate metabolism:Methane metabolism:Carbon fixation pathways in prokaryotes:Pantothenate and CoA biosynthesis:Porphyrin and chlorophyll metabolism:Metabolic pathways:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:RNA polymerase:General function prediction only:General function prediction only:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:ackA:coaBC_dfp:amt:DPOR_bchN:DPOR_bchL:rpoB:gshA_cyano:rpoC1_cyan:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism of Cofactors and Vitamins:Metabolism of Other Amino Acids:Nucleotide Metabolism:Lipid Metabolism:Energy Metabolism:Carbohydrate Metabolism:Metabolism:Poorly characterized:Metabolism:Cellular processes and signaling:Information storage and processing:Biosynthesis of cofactors, prosthetic groups, and carriers:Transport and binding proteins:Transcription:Energy metabolism:Chlorophyll and bacteriochlorphyll:Glutathione and analogs:Pantothenate and coenzyme A:Cations and iron carrying compounds:DNA-dependent RNA polymerase:Fermentation:Global:Genetic Information Processing:Metabolism:Metabolism:Transcription:Metabolism of Cofactors and Vitamins:Metabolism of Other Amino Acids:Nucleotide Metabolism:Lipid Metabolism:Transcription:Energy Metabolism:Global:Metabolism:Genetic Information Processing:Carbohydrate Metabolism:Energy metabolism:Fermentation:Transcription:DNA-dependent RNA polymerase:Transport and binding proteins:Cations and iron carrying compounds:Biosynthesis of cofactors, prosthetic groups, and carriers:Pantothenate and coenzyme A:Glutathione and analogs:Chlorophyll and bacteriochlorphyll:Information storage and processing" 20 "EMAP domain:Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases:Zn-dependent oligopeptidases:ABC-type branched-chain amino acid transport systems, ATPase component:Uncharacterized conserved protein:Glycosyltransferase:Signal transduction histidine kinase:Predicted unusual protein kinase:Formyltetrahydrofolate hydrolase:Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA:GDP-D-mannose dehydratase:Hemolysins and related proteins containing CBS domains:Predicted nucleic acid-binding protein, contains PIN domain:DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog:Fatty acid desaturase:ABC-type branched-chain amino acid transport system, permease component:Hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA:Amino acid transport and metabolism:Amino acid transport and metabolism:Nucleotide transport and metabolism:Nucleotide transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Fructose and mannose metabolism:Amino sugar and nucleotide sugar metabolism:Glyoxylate and dicarboxylate metabolism:One carbon pool by folate:Aminoacyl-tRNA biosynthesis:Metabolic pathways:ABC transporters:RNA polymerase:General function prediction only:General function prediction only:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:gatA:TIGR00149_YbjQ:cinA_cterm:PurU:gmd:chap_CsaA:sigma70-ECF:Metabolism:Poorly characterized:DNA replication, recombination, and repair:Metabolism of Cofactors and Vitamins:Transcription:Translation:Membrane Transport:Metabolism:Metabolism:Genetic Information Processing:Environmental Information Processing:Global:Purine ribonucleotide biosynthesis:DNA replication, recombination, and repair:tRNA aminoacylation:Protein and peptide secretion and trafficking:Enzymes of unknown specificity:Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides:Purines, pyrimidines, nucleosides, and nucleotides:DNA metabolism:Protein synthesis:Protein fate:Unknown function:Cell envelope:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Carbohydrate Metabolism:Metabolism of Cofactors and Vitamins:Genetic Information Processing:Transcription:Translation:Environmental Information Processing:Membrane Transport:Global:Metabolism:Purines, pyrimidines, nucleosides, and nucleotides:Purine ribonucleotide biosynthesis:DNA metabolism:Carbohydrate Metabolism:Protein synthesis:tRNA aminoacylation:Protein fate:Protein and peptide secretion and trafficking:Unknown function:Enzymes of unknown specificity:Cell envelope:Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides:Information storage and processing:Cellular processes and signaling" 21 "Translation initiation factor 1 (IF-1):Serine/threonine protein kinase:Translation initiation factor 2 (IF-2; GTPase):Fe2+/Zn2+ uptake regulation proteins:ABC-type multidrug transport system, ATPase and permease components:Uncharacterized conserved protein:Predicted membrane protein:Lysophospholipase:Predicted metalloprotease:Predicted nucleic acid-binding protein, contains PIN domain:Uncharacterized conserved protein:Signal transduction histidine kinase:Predicted integral membrane protein:Lipid transport and metabolism:Lipid transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Two-component system:General function prediction only:General function prediction only:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:infA:sensory_box:small_GTP:Defense mechanisms:Defense mechanisms:Poorly characterized:Environmental Information Processing:Small molecule interactions:Translation factors:General:Regulatory functions:Protein synthesis:Unknown function:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Environmental Information Processing:Signal Transduction:Regulatory functions:Small molecule interactions:Protein synthesis:Translation factors:Unknown function:General:Information storage and processing:Cellular processes and signaling:Metabolism:Signal Transduction" 22 "3-polyprenyl-4-hydroxybenzoate decarboxylase:Zn-dependent hydrolases, including glyoxylases:Topoisomerase IA:K+ transport systems, NAD-binding component:Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily):cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases:Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain:3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases:DNA polymerase III, gamma/tau subunits:Signal transduction histidine kinase regulating citrate/malate metabolism:Predicted membrane protein:Predicted transmembrane sensor domain:Predicted membrane protein:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Ubiquinone and other terpenoid-quinone biosynthesis:Purine metabolism:Pyrimidine metabolism:Valine leucine and isoleucine degradation:Pyruvate metabolism:Metabolic pathways:Biosynthesis of secondary metabolites:Two-component system:DNA replication:Mismatch repair:Homologous recombination:General function prediction only:General function prediction only:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:ubiX_pad:topA_bact:dnaX_nterm:GSH_gloB:Environmental Information Processing:Signal Transduction:Cellular processes and signaling:Global:Metabolism:Information storage and processing:DNA metabolism:DNA replication, recombination, and repair:Cellular processes:Detoxification:Unknown function:Enzymes of unknown specificity:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Unknown function:Cellular processes:DNA metabolism:Enzymes of unknown specificity:Detoxification:DNA replication, recombination, and repair:Global:Environmental Information Processing:Genetic Information Processing:Metabolism:Metabolism:Signal Transduction:Replication and Repair:Metabolism of Cofactors and Vitamins:Amino Acid Metabolism:Nucleotide Metabolism:Nucleotide Metabolism:Amino Acid Metabolism:Carbohydrate Metabolism:Metabolism of Cofactors and Vitamins:Metabolism:Genetic Information Processing:Replication and Repair:Poorly characterized:Metabolism:Carbohydrate Metabolism" 23 "Energy production and conversion:Energy production and conversion:Cytosine/adenosine deaminases:Coproporphyrinogen III oxidase and related Fe-S oxidoreductases:Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily:Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes:Uncharacterized low-complexity proteins:Rubrerythrin:Pyrimidine reductase, riboflavin biosynthesis:Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase:DNA polymerase III, gamma/tau subunits:Uncharacterized protein conserved in bacteria:Uncharacterized conserved protein:Uncharacterized conserved protein:Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain:Nucleotide transport and metabolism:Nucleotide transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Replication, recombination and repair:Replication, recombination and repair:Purine metabolism:Pyrimidine metabolism:Riboflavin metabolism:Atrazine degradation:Porphyrin and chlorophyll metabolism:Metabolic pathways:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:DNA replication:Mismatch repair:Homologous recombination:General function prediction only:General function prediction only:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:GGDEF:hemN_rel:dnaX_nterm:DNA metabolism:Metabolism of Cofactors and Vitamins:Xenobiotics Biodegradation and Metabolism:Replication and Repair:Metabolism:Metabolism:Genetic Information Processing:Global:DNA replication, recombination, and repair:Heme, porphyrin, and cobalamin:Other:DNA metabolism:Biosynthesis of cofactors, prosthetic groups, and carriers:Signal transduction:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Nucleotide Metabolism:Metabolism of Cofactors and Vitamins:Xenobiotics Biodegradation and Metabolism:Genetic Information Processing:Replication and Repair:Global:Metabolism:Nucleotide Metabolism:DNA replication, recombination, and repair:Biosynthesis of cofactors, prosthetic groups, and carriers:Heme, porphyrin, and cobalamin:Signal transduction:Other:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized" 24 "Energy production and conversion:Energy production and conversion:Molybdopterin biosynthesis enzyme:Glycosyltransferase:Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases:Transcriptional regulator:Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily):Dehydrogenases (flavoproteins):ABC-type branched-chain amino acid transport systems, periplasmic component:Molybdopterin-guanine dinucleotide biosynthesis protein A:Acyl-[acyl carrier protein]--UDP-N-acetylglucosamine O-acyltransferase:Uncharacterized protein conserved in bacteria:Exonuclease VII, large subunit:ABC-type sulfate transport system, periplasmic component:Phage protein U:Predicted membrane protein:Response regulator of citrate/malate metabolism:P2-like prophage tail protein X:Amino acid transport and metabolism:Amino acid transport and metabolism:Nucleotide transport and metabolism:Nucleotide transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Lipopolysaccharide biosynthesis:Carotenoid biosynthesis:Metabolic pathways:Biosynthesis of secondary metabolites:ABC transporters:Mismatch repair:General function prediction only:General function prediction only:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:xseA:3a0106s03:lipid_A_lpxA:Cell envelope:Metabolism of Terpenoids and Polyketides:Replication and Repair:Membrane Transport:Metabolism:Metabolism:Genetic Information Processing:Environmental Information Processing:Global:Degradation of DNA:Anions:Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides:DNA metabolism:Transport and binding proteins:Cell envelope:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Glycan Biosynthesis and Metabolism:Metabolism of Terpenoids and Polyketides:Genetic Information Processing:Replication and Repair:Environmental Information Processing:Membrane Transport:Global:Metabolism:DNA metabolism:Degradation of DNA:Transport and binding proteins:Anions:Glycan Biosynthesis and Metabolism:Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized" 25 "Type I restriction-modification system methyltransferase subunit:SAM-dependent methyltransferases:Phytoene dehydrogenase and related proteins:Uncharacterized iron-regulated protein:Uncharacterized protein conserved in bacteria:Uncharacterized conserved protein:Secondary metabolites biosynthesis, transport and catabolism:Secondary metabolites biosynthesis, transport and catabolism:General function prediction only:General function prediction only:Function unknown:Function unknown:TIGR02466:desat_CrtD:TIGR03492:Defense mechanisms:Defense mechanisms:Conserved:Other:Hypothetical proteins:Biosynthesis of cofactors, prosthetic groups, and carriers:Cellular processes and signaling:Metabolism:Poorly characterized:Hypothetical proteins:Conserved:Biosynthesis of cofactors, prosthetic groups, and carriers:Other:Cellular processes and signaling:Metabolism:Poorly characterized" 26 "Energy production and conversion:Energy production and conversion:Predicted sugar kinase:Lipoate-protein ligase A:Glycerol dehydrogenase and related enzymes:Predicted Na+-dependent transporter:Glycine cleavage system T protein (aminomethyltransferase):Predicted phosphatases:Signal transduction histidine kinase:Ni,Fe-hydrogenase maturation factor:Predicted endonuclease distantly related to archaeal Holliday junction resolvase:Metal-dependent amidase/aminoacylase/carboxypeptidase:Type II secretory pathway, pullulanase PulA and related glycosidases:NADH:ubiquinone oxidoreductase 24 kD subunit:Zn-dependent proteases:Uncharacterized protein conserved in bacteria:FOG: GGDEF domain:FOG: PAS/PAC domain:Amino acid transport and metabolism:Amino acid transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Replication, recombination and repair:Replication, recombination and repair:Oxidative phosphorylation:Glycine serine and threonine metabolism:Arginine and proline metabolism:Glycerolipid metabolism:One carbon pool by folate:Nicotinate and nicotinamide metabolism:Lipoic acid metabolism:Nitrogen metabolism:Metabolic pathways:Biosynthesis of secondary metabolites:Two-component system:General function prediction only:General function prediction only:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:hydrog_prot:sensory_box:TIGR00252:GGDEF:gcvT:HAD-SF-IA-hyp1:amidohydrolases:glgX_debranch:IV_pilin_GFxxxE:Amino acids and amines:Lipid Metabolism:Amino Acid Metabolism:Metabolism of Cofactors and Vitamins:Signal Transduction:Metabolism:Metabolism:Environmental Information Processing:Global:Amino acids and amines:Biosynthesis and degradation of polysaccharides:Small molecule interactions:Protein and peptide secretion and trafficking:Degradation of proteins, peptides, and glycopeptides:Conserved:Other:Energy metabolism:Regulatory functions:Protein fate:Hypothetical proteins:Signal transduction:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Energy Metabolism:Lipid Metabolism:Amino Acid Metabolism:Metabolism of Cofactors and Vitamins:Environmental Information Processing:Signal Transduction:Global:Metabolism:Energy metabolism:Energy Metabolism:Biosynthesis and degradation of polysaccharides:Regulatory functions:Small molecule interactions:Protein fate:Protein and peptide secretion and trafficking:Degradation of proteins, peptides, and glycopeptides:Hypothetical proteins:Conserved:Signal transduction:Other:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized" 27 "Energy production and conversion:Energy production and conversion:Predicted glutamine amidotransferase:Lipoate-protein ligase B:Molecular chaperone:Sugar kinases, ribokinase family:Predicted phosphatases:Single-stranded DNA-specific exonuclease:ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components:7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase:Predicted UDP-glucose 6-dehydrogenase:Nicotinamide mononucleotide adenylyltransferase:Inactive homolog of metal-dependent proteases, putative molecular chaperone:ABC-type sulfate transport system, periplasmic component:Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain):Cobalamin biosynthesis protein CbiD:Pyrimidine reductase, riboflavin biosynthesis:FOG: GGDEF domain:Predicted nuclease (RecB family):Carbonic anhydrase:Predicted thiol oxidoreductase:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Replication, recombination and repair:Replication, recombination and repair:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Pentose and glucuronate interconversions:Fructose and mannose metabolism:Ascorbate and aldarate metabolism:Starch and sucrose metabolism:Amino sugar and nucleotide sugar metabolism:Glyoxylate and dicarboxylate metabolism:Riboflavin metabolism:Nicotinate and nicotinamide metabolism:Lipoic acid metabolism:Folate biosynthesis:Porphyrin and chlorophyll metabolism:Nitrogen metabolism:Metabolic pathways:Biosynthesis of secondary metabolites:ABC transporters:Base excision repair:Mismatch repair:Homologous recombination:General function prediction only:General function prediction only:Signal transduction mechanisms:Signal transduction mechanisms:cyt_tran_rel:lipB:ribD_Cterm:GGDEF:cbiD:recJ:3a0106s03:ntrCD:folK:HAD-SF-IA-v1:NDP-sugDHase:TIGR03491:bact_YeaZ:Metabolism:Energy Metabolism:Metabolism of Cofactors and Vitamins:Replication and Repair:Membrane Transport:Metabolism:Metabolism:Genetic Information Processing:Environmental Information Processing:Global:DNA replication, recombination, and repair:Protein modification and repair:Anions:Other:Enzymes of unknown specificity:Folic acid:Heme, porphyrin, and cobalamin:Other:DNA metabolism:Protein fate:Transport and binding proteins:Unknown function:Biosynthesis of cofactors, prosthetic groups, and carriers:Signal transduction:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Carbohydrate Metabolism:Energy Metabolism:Metabolism of Cofactors and Vitamins:Genetic Information Processing:Replication and Repair:Environmental Information Processing:Membrane Transport:Global:Carbohydrate Metabolism:DNA metabolism:DNA replication, recombination, and repair:Protein fate:Protein modification and repair:Transport and binding proteins:Anions:Other:Unknown function:Enzymes of unknown specificity:Biosynthesis of cofactors, prosthetic groups, and carriers:Folic acid:Heme, porphyrin, and cobalamin:Signal transduction:Other:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized" 28 "Ribosomal protein L5:Ribosomal protein S8:Phosphoglycerate dehydrogenase and related dehydrogenases:Pseudouridine synthase:Ribosomal protein L29:Leucyl aminopeptidase:Adenylate kinase and related kinases:Phage tail sheath protein FI:Phage tail tube protein FII:Uncharacterized conserved protein:Bacteriophage capsid protein:Amino acid transport and metabolism:Amino acid transport and metabolism:Nucleotide transport and metabolism:Nucleotide transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Purine metabolism:Glycine serine and threonine metabolism:Glutathione metabolism:Methane metabolism:Metabolic pathways:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Ribosome:General function prediction only:General function prediction only:Function unknown:Function unknown:L29:TruB:PGDH:adk:portal_lambda:tail_tube:tape_meas_TP901:Serine family:Information storage and processing:Metabolism:Poorly characterized:Metabolism:Nucleotide Metabolism:Amino Acid Metabolism:Metabolism of Other Amino Acids:Translation:Metabolism:Metabolism:Genetic Information Processing:Global:Nucleotide and nucleoside interconversions:Ribosomal proteins: synthesis and modification:tRNA and rRNA base modification:Prophage functions:Serine family:Purines, pyrimidines, nucleosides, and nucleotides:Protein synthesis:Mobile and extrachromosomal element functions:Amino acid biosynthesis:Information storage and processing:Metabolism:Poorly characterized:Metabolism:Energy Metabolism:Nucleotide Metabolism:Amino Acid Metabolism:Metabolism of Other Amino Acids:Genetic Information Processing:Translation:Global:Energy Metabolism:Purines, pyrimidines, nucleosides, and nucleotides:Nucleotide and nucleoside interconversions:Protein synthesis:Ribosomal proteins: synthesis and modification:tRNA and rRNA base modification:Mobile and extrachromosomal element functions:Prophage functions:Amino acid biosynthesis" 29 "Energy production and conversion:Energy production and conversion:Oxyanion-translocating ATPase:Ribosomal protein S12:Predicted Co/Zn/Cd cation transporters:Phosphoribosylaminoimidazole (AIR) synthetase:Conserved domain frequently associated with peptide methionine sulfoxide reductase:Uncharacterized conserved protein:Thiamine biosynthesis protein ThiC:Phosphoribosylpyrophosphate synthetase:Exoribonuclease R:Glutathione S-transferase:Protease subunit of ATP-dependent Clp proteases:Penicillin tolerance protein:Cytochrome c biogenesis protein:NifU homolog involved in Fe-S cluster formation:Ribosome-binding factor A:ABC-type Fe3+ transport system, permease component:Glycosyltransferases, probably involved in cell wall biogenesis:ResB protein required for cytochrome c biosynthesis:Cobalamin biosynthesis protein CobN and related Mg-chelatases:Multidrug resistance efflux pump:ABC-type uncharacterized transport system, permease component:ABC-type spermidine/putrescine transport systems, ATPase components:ABC-type uncharacterized transport system, permease and ATPase components:Uncharacterized conserved protein:Integral membrane protein (PIN domain superfamily):Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain:Amino acid transport and metabolism:Amino acid transport and metabolism:Nucleotide transport and metabolism:Nucleotide transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Pentose phosphate pathway:Purine metabolism:Glutathione metabolism:Starch and sucrose metabolism:Thiamine metabolism:Porphyrin and chlorophyll metabolism:Terpenoid backbone biosynthesis:Metabolic pathways:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:ABC transporters:Ribosome:General function prediction only:General function prediction only:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:TIGR00049:rbfA:thiC:ispH_lytB:GGDEF:arsA:TIGR00357:purM:rpsL_bact:ribP_PPkin:CDF:SUF_scaf_2:BchH:AcsF:Intracellular trafficking, secretion, and vesicular transport:Intracellular trafficking, secretion, and vesicular transport:Defense mechanisms:Defense mechanisms:Transport and binding proteins:Nucleotide Metabolism:Metabolism of Other Amino Acids:Metabolism of Cofactors and Vitamins:Metabolism of Terpenoids and Polyketides:Translation:Membrane Transport:Metabolism:Metabolism:Genetic Information Processing:Environmental Information Processing:Global:Purine ribonucleotide biosynthesis:RNA processing:Ribosomal proteins: synthesis and modification:Cations and iron carrying compounds:Adaptations to atypical conditions:Conserved:Other:Thiamine:Chlorophyll and bacteriochlorphyll:Other:Purines, pyrimidines, nucleosides, and nucleotides:Transcription:Protein synthesis:Transport and binding proteins:Cellular processes:Hypothetical proteins:Biosynthesis of cofactors, prosthetic groups, and carriers:Signal transduction:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Carbohydrate Metabolism:Nucleotide Metabolism:Metabolism of Other Amino Acids:Metabolism of Cofactors and Vitamins:Metabolism of Terpenoids and Polyketides:Genetic Information Processing:Translation:Environmental Information Processing:Membrane Transport:Global:Metabolism:Purines, pyrimidines, nucleosides, and nucleotides:Purine ribonucleotide biosynthesis:Transcription:RNA processing:Protein synthesis:Ribosomal proteins: synthesis and modification:Carbohydrate Metabolism:Cations and iron carrying compounds:Cellular processes:Adaptations to atypical conditions:Hypothetical proteins:Conserved:Biosynthesis of cofactors, prosthetic groups, and carriers:Other:Thiamine:Chlorophyll and bacteriochlorphyll:Signal transduction:Other:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized" 30 "Isopropylmalate/homocitrate/citramalate synthases:Replicative DNA helicase:Predicted enzyme with a TIM-barrel fold:ATPase components of ABC transporters with duplicated ATPase domains:Na+-driven multidrug efflux pump:Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily):tmRNA-binding protein:Collagenase and related proteases:Cellulase M and related proteins:ATP-utilizing enzymes of the PP-loop superfamily:dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes:ATP:corrinoid adenosyltransferase:FOG: GGDEF domain:Uncharacterized conserved protein, contains S4-like domain:Uncharacterized protein conserved in bacteria:Predicted membrane protein:Uncharacterized conserved protein:ABC-type uncharacterized transport system, permease component:Amino acid transport and metabolism:Amino acid transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Replication, recombination and repair:Replication, recombination and repair:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Valine leucine and isoleucine biosynthesis:Streptomycin biosynthesis:Polyketide sugar unit biosynthesis:Pyruvate metabolism:Porphyrin and chlorophyll metabolism:Metabolic pathways:Biosynthesis of secondary metabolites:DNA replication:General function prediction only:General function prediction only:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:TIGR00044:smpB:GGDEF:TIGR00268:DnaB:matE:LeuA_rel:rmlC:PS_II_S4:Defense mechanisms:Defense mechanisms:Other:Cell envelope:Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Protein synthesis:Amino Acid Metabolism:Metabolism of Cofactors and Vitamins:Metabolism of Terpenoids and Polyketides:Biosynthesis of Other Secondary Metabolites:Replication and Repair:Metabolism:Metabolism:Genetic Information Processing:Global:Photosynthesis:DNA replication, recombination, and repair:Other:Other:Conserved:Enzymes of unknown specificity:General:Other:Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides:Energy metabolism:DNA metabolism:Protein synthesis:Transport and binding proteins:Hypothetical proteins:Unknown function:Signal transduction:Cell envelope:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Carbohydrate Metabolism:Amino Acid Metabolism:Metabolism of Cofactors and Vitamins:Metabolism of Terpenoids and Polyketides:Biosynthesis of Other Secondary Metabolites:Genetic Information Processing:Replication and Repair:Global:Metabolism:Energy metabolism:Photosynthesis:DNA metabolism:DNA replication, recombination, and repair:Carbohydrate Metabolism:Other:Transport and binding proteins:Other:Hypothetical proteins:Conserved:Unknown function:Enzymes of unknown specificity:General:Signal transduction" 31 "Dolichol kinase:Predicted S-adenosylmethionine-dependent methyltransferase:Ribosomal protein S20:Site-specific DNA methylase:1,4-alpha-glucan branching enzyme:RecA-superfamily ATPases implicated in signal transduction:Glutathione S-transferase:Transposase and inactivated derivatives:Membrane proteins related to metalloendopeptidases:Alanine racemase:Periplasmic protease:Putative transcription activator:Multisubunit Na+/H+ antiporter, MnhC subunit:FOG: PAS/PAC domain:Uncharacterized protein conserved in bacteria:Predicted permease:Heme oxygenase:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Cysteine and methionine metabolism:D-Alanine metabolism:Glutathione metabolism:Starch and sucrose metabolism:Thiamine metabolism:Porphyrin and chlorophyll metabolism:Metabolic pathways:Ribosome:General function prediction only:General function prediction only:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:S20:prc:sensory_box:alr:dcm:branching_enzym:circ_KaiB:circ_KaiC:DNA metabolism:Amino Acid Metabolism:Metabolism of Other Amino Acids:Metabolism of Cofactors and Vitamins:Translation:Metabolism:Metabolism:Genetic Information Processing:Global:Biosynthesis and degradation of polysaccharides:Small molecule interactions:DNA replication, recombination, and repair:Ribosomal proteins: synthesis and modification:Protein modification and repair:Other:Biosynthesis and degradation of murein sacculus and peptidoglycan:Energy metabolism:Regulatory functions:DNA metabolism:Protein synthesis:Protein fate:Cellular processes:Cell envelope:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Carbohydrate Metabolism:Amino Acid Metabolism:Metabolism of Other Amino Acids:Metabolism of Cofactors and Vitamins:Genetic Information Processing:Translation:Global:Metabolism:Energy metabolism:Biosynthesis and degradation of polysaccharides:Regulatory functions:Small molecule interactions:Carbohydrate Metabolism:DNA replication, recombination, and repair:Protein synthesis:Ribosomal proteins: synthesis and modification:Protein fate:Protein modification and repair:Cellular processes:Other:Cell envelope:Biosynthesis and degradation of murein sacculus and peptidoglycan:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized" 32 "Energy production and conversion:Energy production and conversion:Dihydroorotate dehydrogenase:ABC-type phosphate transport system, periplasmic component:Mismatch repair ATPase (MutS family):Aspartate carbamoyltransferase, catalytic chain:ABC-type phosphate transport system, permease component:Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain:ABC-type cobalt transport system, ATPase component:Arginine decarboxylase (spermidine biosynthesis):Glycosyltransferases, probably involved in cell wall biogenesis:Methionine synthase I, cobalamin-binding domain:Glycosyl transferases, related to UDP-glucuronosyltransferase:3-methyladenine DNA glycosylase:Predicted transmembrane sensor domain:Uncharacterized conserved protein:Amino acid transport and metabolism:Amino acid transport and metabolism:Nucleotide transport and metabolism:Nucleotide transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Purine metabolism:Pyrimidine metabolism:Alanine aspartate and glutamate metabolism:Cysteine and methionine metabolism:Arginine and proline metabolism:Starch and sucrose metabolism:One carbon pool by folate:Metabolic pathways:Biosynthesis of secondary metabolites:ABC transporters:Two-component system:Base excision repair:Mismatch repair:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:3mg:asp_carb_tr:3a0107s02c:pyrD_sub2:mutS1:speA:metH:ptsS_2:PPOX_FMN_cyano:Cellular processes and signaling:Signal Transduction:Information storage and processing:Global:Metabolism:Amino acid biosynthesis:Central intermediary metabolism:Polyamine biosynthesis:Purines, pyrimidines, nucleosides, and nucleotides:Pyrimidine ribonucleotide biosynthesis:DNA metabolism:DNA replication, recombination, and repair:Transport and binding proteins:Anions:Unknown function:Enzymes of unknown specificity:Amino acid biosynthesis:Aspartate family:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Unknown function:Transport and binding proteins:DNA metabolism:Purines, pyrimidines, nucleosides, and nucleotides:Central intermediary metabolism:Aspartate family:Enzymes of unknown specificity:Anions:Carbohydrate Metabolism:DNA replication, recombination, and repair:Pyrimidine ribonucleotide biosynthesis:Polyamine biosynthesis:Global:Environmental Information Processing:Genetic Information Processing:Metabolism:Metabolism:Signal Transduction:Membrane Transport:Replication and Repair:Metabolism of Cofactors and Vitamins:Amino Acid Metabolism:Amino Acid Metabolism:Nucleotide Metabolism:Nucleotide Metabolism:Carbohydrate Metabolism:Metabolism of Cofactors and Vitamins:Metabolism:Genetic Information Processing:Replication and Repair:Poorly characterized:Metabolism:Environmental Information Processing:Membrane Transport" 33 "Lipoate-protein ligase A:Acetyltransferase (isoleucine patch superfamily):Lactoylglutathione lyase and related lyases:Serine/threonine protein kinase:Signal transduction histidine kinase:DNA-binding ferritin-like protein (oxidative damage protectant):Predicted GTPases:Metal-dependent amidase/aminoacylase/carboxypeptidase:Putative protein-S-isoprenylcysteine methyltransferase:FOG: PAS/PAC domain:Uncharacterized conserved protein:Uncharacterized protein conserved in bacteria:Amino acid transport and metabolism:Amino acid transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Arginine and proline metabolism:Lipoic acid metabolism:Metabolic pathways:Biosynthesis of secondary metabolites:General function prediction only:General function prediction only:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:sensory_box:small_GTP:amidohydrolases:General:Metabolism of Cofactors and Vitamins:Metabolism:Metabolism:Global:Small molecule interactions:Degradation of proteins, peptides, and glycopeptides:General:Regulatory functions:Protein fate:Unknown function:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Amino Acid Metabolism:Metabolism of Cofactors and Vitamins:Global:Metabolism:Regulatory functions:Small molecule interactions:Protein fate:Degradation of proteins, peptides, and glycopeptides:Unknown function:Amino Acid Metabolism:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized" 34 "Dimethyladenosine transferase (rRNA methylation):Ribonuclease HII:Dihydrodipicolinate synthase/N-acetylneuraminate lyase:Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase:Nucleoside-diphosphate-sugar epimerases:Predicted esterase:Glycine/D-amino acid oxidases (deaminating):6-pyruvoyl-tetrahydropterin synthase:dTDP-D-glucose 4,6-dehydratase:N-acetylglutamate synthase (N-acetylornithine aminotransferase):Cell division septal protein:Beta-lactamase class A:Sporulation protein and related proteins:Lipid A core - O-antigen ligase and related enzymes:Cystathionine beta-lyase family protein involved in aluminum resistance:Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain:Cell cycle control, cell division, chromosome partitioning:Cell cycle control, cell division, chromosome partitioning:Amino acid transport and metabolism:Amino acid transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Replication, recombination and repair:Replication, recombination and repair:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Lysine biosynthesis:Arginine and proline metabolism:Streptomycin biosynthesis:Polyketide sugar unit biosynthesis:Methane metabolism:Thiamine metabolism:Folate biosynthesis:Metabolic pathways:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Two-component system:DNA replication:General function prediction only:General function prediction only:Signal transduction mechanisms:Signal transduction mechanisms:HMP-P_kinase:ArgJ:sensory_box:dapA:ksgA:2A73:dTDP_gluc_dehyt:SpoIID_LytB:fghA_ester_D:Defense mechanisms:Defense mechanisms:Thiamine:Cell envelope:Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Regulatory functions:Amino Acid Metabolism:Metabolism of Cofactors and Vitamins:Metabolism of Terpenoids and Polyketides:Biosynthesis of Other Secondary Metabolites:Replication and Repair:Signal Transduction:Metabolism:Metabolism:Genetic Information Processing:Environmental Information Processing:Global:Small molecule interactions:tRNA and rRNA base modification:Carbohydrates, organic alcohols, and acids:Detoxification:General:Aspartate family:Glutamate family:Thiamine:Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides:Regulatory functions:Protein synthesis:Transport and binding proteins:Cellular processes:Unknown function:Amino acid biosynthesis:Biosynthesis of cofactors, prosthetic groups, and carriers:Cell envelope:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Energy Metabolism:Amino Acid Metabolism:Metabolism of Cofactors and Vitamins:Metabolism of Terpenoids and Polyketides:Biosynthesis of Other Secondary Metabolites:Genetic Information Processing:Replication and Repair:Environmental Information Processing:Signal Transduction:Global:Metabolism:Energy Metabolism:Small molecule interactions:Protein synthesis:tRNA and rRNA base modification:Transport and binding proteins:Carbohydrates, organic alcohols, and acids:Cellular processes:Detoxification:Unknown function:General:Amino acid biosynthesis:Aspartate family:Glutamate family:Biosynthesis of cofactors, prosthetic groups, and carriers" 35 "Energy production and conversion:Energy production and conversion:Nucleoside diphosphate kinase:F0F1-type ATP synthase, subunit a:ADP-glucose pyrophosphorylase:Chaperonin GroEL (HSP60 family):Homoserine dehydrogenase:Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases:Exoribonuclease R:Glutathione S-transferase:F0F1-type ATP synthase, subunit b:Rieske Fe-S protein:NADH:ubiquinone oxidoreductase subunit 2 (chain N):S-adenosylmethionine decarboxylase:Ribulose 1,5-bisphosphate carboxylase, large subunit:Phosphoenolpyruvate carboxylase:Amino acid transport and metabolism:Amino acid transport and metabolism:Nucleotide transport and metabolism:Nucleotide transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Transcription:Transcription:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Oxidative phosphorylation:Photosynthesis:Purine metabolism:Pyrimidine metabolism:Glycine serine and threonine metabolism:Cysteine and methionine metabolism:Lysine biosynthesis:Arginine and proline metabolism:Glutathione metabolism:Starch and sucrose metabolism:Amino sugar and nucleotide sugar metabolism:Pyruvate metabolism:Glyoxylate and dicarboxylate metabolism:Methane metabolism:Carbon fixation in photosynthetic organisms:Carbon fixation pathways in prokaryotes:Metabolic pathways:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:RNA degradation:General function prediction only:General function prediction only:ATP_synt_6_or_A:NDH_I_N:glgC:GroEL:SAM_DCase_Bsu:Biosynthesis and degradation of polysaccharides:Protein fate:Protein folding and stabilization:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Cellular processes and signaling:Information storage and processing:Protein fate:Energy metabolism:Central intermediary metabolism:Protein folding and stabilization:Biosynthesis and degradation of polysaccharides:Electron transport:ATP-proton motive force interconversion:Polyamine biosynthesis:Global:Genetic Information Processing:Metabolism:Metabolism:Folding Sorting and Degradation:Metabolism of Other Amino Acids:Amino Acid Metabolism:Nucleotide Metabolism:Energy Metabolism:Energy Metabolism:Nucleotide Metabolism:Carbohydrate Metabolism:Amino Acid Metabolism:Metabolism:Poorly characterized:Metabolism:Carbohydrate Metabolism:Metabolism of Other Amino Acids:Genetic Information Processing:Folding Sorting and Degradation:Global:Metabolism:Central intermediary metabolism:Polyamine biosynthesis:Energy metabolism:ATP-proton motive force interconversion:Electron transport" 36 "Energy production and conversion:Energy production and conversion:Putative translation factor (SUA5):Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit:Glutamine phosphoribosylpyrophosphate amidotransferase:AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful):Methionyl-tRNA synthetase:Superfamily I DNA and RNA helicases:Aminopeptidase N:S-adenosylhomocysteine hydrolase:Valyl-tRNA synthetase:FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor):Glutathione S-transferase:Protease subunit of ATP-dependent Clp proteases:Aconitase B:Peroxiredoxin:Predicted RNA-binding protein homologous to eukaryotic snRNP:Carbon dioxide concentrating mechanism/carboxysome shell protein:Amino acid transport and metabolism:Amino acid transport and metabolism:Nucleotide transport and metabolism:Nucleotide transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Glycolysis / Gluconeogenesis:Citrate cycle (TCA cycle):Purine metabolism:Alanine aspartate and glutamate metabolism:Cysteine and methionine metabolism:Valine leucine and isoleucine biosynthesis:Selenocompound metabolism:Glutathione metabolism:Pyruvate metabolism:Glyoxylate and dicarboxylate metabolism:Butanoate metabolism:One carbon pool by folate:Carbon fixation pathways in prokaryotes:Aminoacyl-tRNA biosynthesis:Metabolic pathways:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Nucleotide excision repair:Mismatch repair:Secondary metabolites biosynthesis, transport and catabolism:Secondary metabolites biosynthesis, transport and catabolism:TIGR00057:tig:acnB:purH:metG:valS:clpP:ahcY:pcrA:purF:Intracellular trafficking, secretion, and vesicular transport:Intracellular trafficking, secretion, and vesicular transport:Global:Metabolism:Amino Acid Metabolism:Nucleotide Metabolism:Energy Metabolism:Carbohydrate Metabolism:Metabolism:Metabolism:Cellular processes and signaling:Information storage and processing:Carbohydrate Metabolism:Energy metabolism:Amino acids and amines:TCA cycle:Purines, pyrimidines, nucleosides, and nucleotides:Purine ribonucleotide biosynthesis:DNA metabolism:DNA replication, recombination, and repair:Protein synthesis:tRNA aminoacylation:Protein fate:Protein folding and stabilization:Degradation of proteins, peptides, and glycopeptides:Unknown function:General:Information storage and processing:Cellular processes and signaling:Metabolism:Unknown function:Protein fate:Protein synthesis:DNA metabolism:Purines, pyrimidines, nucleosides, and nucleotides:Energy metabolism:General:Degradation of proteins, peptides, and glycopeptides:Protein folding and stabilization:tRNA aminoacylation:DNA replication, recombination, and repair:Purine ribonucleotide biosynthesis:TCA cycle:Amino acids and amines:Global:Genetic Information Processing:Metabolism:Metabolism:Replication and Repair:Translation:Metabolism of Cofactors and Vitamins:Metabolism of Other Amino Acids:Amino Acid Metabolism:Nucleotide Metabolism:Translation:Energy Metabolism:Genetic Information Processing:Replication and Repair:Metabolism of Cofactors and Vitamins:Metabolism of Other Amino Acids" 37 "Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase:Thymidylate kinase:N-methylhydantoinase A/acetone carboxylase, beta subunit:Cobalamin-5-phosphate synthase:ABC-type molybdate transport system, periplasmic component:GTPase SAR1 and related small G proteins:Phytoene dehydrogenase and related proteins:Exonuclease VII, large subunit:Predicted DNA-binding protein with PD1-like DNA-binding motif:4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family:Uncharacterized membrane protein, possible Na+ channel or pump:Acyl-CoA dehydrogenases:Uncharacterized protein related to deoxyribodipyrimidine photolyase:Uncharacterized protein conserved in bacteria:Molybdopterin-binding protein:ABC-type molybdate transport system, permease component:Amino acid transport and metabolism:Amino acid transport and metabolism:Nucleotide transport and metabolism:Nucleotide transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Replication, recombination and repair:Replication, recombination and repair:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Pyrimidine metabolism:Glutathione metabolism:Porphyrin and chlorophyll metabolism:Metabolic pathways:ABC transporters:Mismatch repair:Secondary metabolites biosynthesis, transport and catabolism:Secondary metabolites biosynthesis, transport and catabolism:General function prediction only:General function prediction only:Function unknown:Function unknown:DTMP_kinase:xseA:cobS:Mop:L_thr_O3P_dcar:modA:modB_ABC:desat_CrtD:Degradation of DNA:Metabolism of Other Amino Acids:Metabolism of Cofactors and Vitamins:Replication and Repair:Membrane Transport:Metabolism:Metabolism:Genetic Information Processing:Environmental Information Processing:Global:Nucleotide and nucleoside interconversions:Degradation of DNA:Anions:Other:Heme, porphyrin, and cobalamin:Purines, pyrimidines, nucleosides, and nucleotides:DNA metabolism:Transport and binding proteins:Biosynthesis of cofactors, prosthetic groups, and carriers:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Nucleotide Metabolism:Metabolism of Other Amino Acids:Metabolism of Cofactors and Vitamins:Genetic Information Processing:Replication and Repair:Environmental Information Processing:Membrane Transport:Global:Metabolism:Purines, pyrimidines, nucleosides, and nucleotides:Nucleotide and nucleoside interconversions:DNA metabolism:Nucleotide Metabolism:Transport and binding proteins:Anions:Biosynthesis of cofactors, prosthetic groups, and carriers:Other:Heme, porphyrin, and cobalamin:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized" 38 "Energy production and conversion:Energy production and conversion:Oxyanion-translocating ATPase:Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase]:Predicted S-adenosylmethionine-dependent methyltransferase:Conserved domain frequently associated with peptide methionine sulfoxide reductase:FAD/FMN-containing dehydrogenases:Uncharacterized conserved protein:NAD/FAD-utilizing enzyme apparently involved in cell division:Predicted Zn-dependent peptidases:cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases:DNA-binding ferritin-like protein (oxidative damage protectant):Chemotaxis signal transduction protein:Methyl-accepting chemotaxis protein:Serine acetyltransferase:ABC-type antimicrobial peptide transport system, ATPase component:DNA-directed RNA polymerase specialized sigma subunit:Micrococcal nuclease (thermonuclease) homologs:Uncharacterized conserved protein, contains double-stranded beta-helix domain:Predicted transcriptional regulator:Predicted ATPase (AAA+ superfamily):Predicted sensor protein/domain:Uncharacterized protein conserved in bacteria:Cell cycle control, cell division, chromosome partitioning:Cell cycle control, cell division, chromosome partitioning:Amino acid transport and metabolism:Amino acid transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Cell motility:Cell motility:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Cysteine and methionine metabolism:Valine leucine and isoleucine biosynthesis:Glyoxylate and dicarboxylate metabolism:Butanoate metabolism:C5-Branched dibasic acid metabolism:Pantothenate and CoA biosynthesis:Sulfur metabolism:Metabolic pathways:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Two-component system:RNA polymerase:General function prediction only:General function prediction only:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:TIGR00049:acolac_lg:gidA:arsA:TIGR00357:cysE:SufR_cyano:sigma70-ECF:Defense mechanisms:Defense mechanisms:Cellular processes:Energy Metabolism:Amino Acid Metabolism:Metabolism of Cofactors and Vitamins:Transcription:Signal Transduction:Metabolism:Metabolism:Genetic Information Processing:Environmental Information Processing:Global:DNA interactions:tRNA and rRNA base modification:Adaptations to atypical conditions:Conserved:Pyruvate family:Serine family:Other:Regulatory functions:Protein synthesis:Cellular processes:Hypothetical proteins:Amino acid biosynthesis:Biosynthesis of cofactors, prosthetic groups, and carriers:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Carbohydrate Metabolism:Energy Metabolism:Amino Acid Metabolism:Metabolism of Cofactors and Vitamins:Genetic Information Processing:Transcription:Environmental Information Processing:Signal Transduction:Global:Metabolism:Regulatory functions:DNA interactions:Protein synthesis:tRNA and rRNA base modification:Carbohydrate Metabolism:Adaptations to atypical conditions:Hypothetical proteins:Conserved:Amino acid biosynthesis:Pyruvate family:Serine family:Biosynthesis of cofactors, prosthetic groups, and carriers:Other:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized" 39 "Energy production and conversion:Energy production and conversion:Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase:Glucan phosphorylase:DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32):Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain:NAD/NADP transhydrogenase beta subunit:K+-transporting ATPase, A chain:Uncharacterized protein conserved in bacteria:NAD/NADP transhydrogenase alpha subunit:Uncharacterized protein involved in ubiquinone biosynthesis:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Transcription:Transcription:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Glycolysis / Gluconeogenesis:Starch and sucrose metabolism:Nicotinate and nicotinamide metabolism:Metabolic pathways:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Two-component system:RNA polymerase:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:kdpA:GAPDH-I:P_ylase:sigma70-ECF:Signal Transduction:Genetic Information Processing:Global:Metabolism:Metabolism of Cofactors and Vitamins:Carbohydrate Metabolism:Metabolism:Poorly characterized:Carbohydrate Metabolism:Energy metabolism:Glycolysis/gluconeogenesis:Biosynthesis and degradation of polysaccharides:Transport and binding proteins:Cations and iron carrying compounds:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Cellular processes and signaling:Information storage and processing:Transport and binding proteins:Energy metabolism:Cations and iron carrying compounds:Biosynthesis and degradation of polysaccharides:Glycolysis/gluconeogenesis:Global:Environmental Information Processing:Genetic Information Processing:Metabolism:Metabolism:Signal Transduction:Transcription:Transcription:Metabolism of Cofactors and Vitamins:Environmental Information Processing" 40 "Energy production and conversion:Energy production and conversion:Adenosylmethionine-8-amino-7-oxononanoate aminotransferase:Predicted EndoIII-related endonuclease:Ribosomal protein L28:Nucleotide-binding protein implicated in inhibition of septum formation:Dihydroxynaphthoic acid synthase:Peroxiredoxin:Valyl-tRNA synthetase:Superoxide dismutase:ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components:Polyphosphate kinase:Mismatch repair ATPase (MutS family):Transcription-repair coupling factor (superfamily II helicase):Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes:ABC-type Fe3+ transport system, periplasmic component:Cell cycle control, cell division, chromosome partitioning:Cell cycle control, cell division, chromosome partitioning:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Ubiquinone and other terpenoid-quinone biosynthesis:Oxidative phosphorylation:Photosynthesis:Valine leucine and isoleucine biosynthesis:Glutathione metabolism:Biotin metabolism:Aminoacyl-tRNA biosynthesis:Metabolic pathways:Biosynthesis of secondary metabolites:ABC transporters:Ribosome:RNA degradation:Base excision repair:Nucleotide excision repair:Mismatch repair:L28:maf:valS:bioA:mfd:mutS2:nth:gluta_reduc_2:menB:poly_P_kin:Biosynthesis of cofactors, prosthetic groups, and carriers:Replication and Repair:Cellular processes:Energy Metabolism:Environmental Information Processing:Membrane Transport:Protein synthesis:Global:Metabolism:DNA metabolism:Energy metabolism:Central intermediary metabolism:Phosphorus compounds:Energy metabolism:Electron transport:DNA metabolism:Other:DNA replication, recombination, and repair:Protein synthesis:tRNA aminoacylation:Ribosomal proteins: synthesis and modification:Cellular processes:Cell division:Biosynthesis of cofactors, prosthetic groups, and carriers:Biotin:Menaquinone and ubiquinone:Information storage and processing:Cellular processes and signaling:Metabolism:Central intermediary metabolism:Menaquinone and ubiquinone:Biotin:Cell division:Ribosomal proteins: synthesis and modification:tRNA aminoacylation:DNA replication, recombination, and repair:Other:Electron transport:Phosphorus compounds:Global:Environmental Information Processing:Genetic Information Processing:Metabolism:Metabolism:Membrane Transport:Replication and Repair:Folding Sorting and Degradation:Translation:Metabolism of Cofactors and Vitamins:Metabolism of Other Amino Acids:Amino Acid Metabolism:Amino Acid Metabolism:Metabolism of Other Amino Acids:Energy Metabolism:Metabolism of Cofactors and Vitamins:Metabolism:Metabolism:Genetic Information Processing:Translation:Cellular processes and signaling:Information storage and processing:Folding Sorting and Degradation" 41 "Energy production and conversion:Energy production and conversion:2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase:Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis:Short-chain dehydrogenases of various substrate specificities:Lipoate synthase:Polyferredoxin:Glycosyltransferases involved in cell wall biogenesis:K+ transport systems, NAD-binding component:Transcriptional regulator:Predicted metal-dependent phosphoesterases (PHP family):RimM protein, required for 16S rRNA processing:Phosphomannomutase:ABC-type polar amino acid transport system, ATPase component:Predicted membrane protein:Predicted dioxygenase of extradiol dioxygenase family:Signal transduction histidine kinase:Amino acid transport and metabolism:Amino acid transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Glycolysis / Gluconeogenesis:Pentose phosphate pathway:Galactose metabolism:Purine metabolism:Starch and sucrose metabolism:Amino sugar and nucleotide sugar metabolism:Streptomycin biosynthesis:Lipoic acid metabolism:Terpenoid backbone biosynthesis:Metabolic pathways:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:ABC transporters:General function prediction only:General function prediction only:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:TIGR00006:ispF:sensory_box:lipA:16S_RimM:Regulatory functions:Nucleotide Metabolism:Metabolism of Cofactors and Vitamins:Metabolism of Terpenoids and Polyketides:Biosynthesis of Other Secondary Metabolites:Membrane Transport:Metabolism:Metabolism:Environmental Information Processing:Global:Small molecule interactions:RNA processing:Other:Lipoate:Biosynthesis and degradation of murein sacculus and peptidoglycan:Regulatory functions:Transcription:Biosynthesis of cofactors, prosthetic groups, and carriers:Cell envelope:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Carbohydrate Metabolism:Nucleotide Metabolism:Metabolism of Cofactors and Vitamins:Metabolism of Terpenoids and Polyketides:Biosynthesis of Other Secondary Metabolites:Environmental Information Processing:Membrane Transport:Global:Metabolism:Carbohydrate Metabolism:Small molecule interactions:Transcription:RNA processing:Biosynthesis of cofactors, prosthetic groups, and carriers:Other:Lipoate:Cell envelope:Biosynthesis and degradation of murein sacculus and peptidoglycan:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized" 42 "Energy production and conversion:Energy production and conversion:Ammonia permease:Nucleoside diphosphate kinase:Glutamine synthetase:Ribosomal protein S16:Ribosomal protein S18:Ribosomal protein L33:Ribosomal protein L35:Uridine kinase:Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases):Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I):Predicted membrane protein:Carbon dioxide concentrating mechanism/carboxysome shell protein:Amino acid transport and metabolism:Amino acid transport and metabolism:Nucleotide transport and metabolism:Nucleotide transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Oxidative phosphorylation:Photosynthesis:Photosynthesis - antenna proteins:Purine metabolism:Pyrimidine metabolism:Alanine aspartate and glutamate metabolism:Arginine and proline metabolism:Carbon fixation in photosynthetic organisms:Porphyrin and chlorophyll metabolism:Nitrogen metabolism:Metabolic pathways:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Two-component system:Ribosome:Secondary metabolites biosynthesis, transport and catabolism:Secondary metabolites biosynthesis, transport and catabolism:General function prediction only:General function prediction only:Function unknown:Function unknown:rpmI_bact:S16:S18:ndhI:GlnA:TIGR00701:amt:rpmG_bact:rpmF_bact:LPOR:PS_II_C550:PS_I_psaK:Global:Metabolism:Amino Acid Metabolism:Nucleotide Metabolism:Energy Metabolism:Metabolism:Poorly characterized:Metabolism:Information storage and processing:Biosynthesis of cofactors, prosthetic groups, and carriers:Amino acid biosynthesis:Energy Metabolism:Energy metabolism:Electron transport:Photosynthesis:Protein synthesis:Ribosomal proteins: synthesis and modification:Transport and binding proteins:Cations and iron carrying compounds:Hypothetical proteins:Conserved:Amino acid biosynthesis:Glutamate family:Biosynthesis of cofactors, prosthetic groups, and carriers:Chlorophyll and bacteriochlorphyll:Information storage and processing:Metabolism:Poorly characterized:Hypothetical proteins:Transport and binding proteins:Protein synthesis:Energy metabolism:Chlorophyll and bacteriochlorphyll:Glutamate family:Conserved:Cations and iron carrying compounds:Ribosomal proteins: synthesis and modification:Photosynthesis:Electron transport:Global:Environmental Information Processing:Genetic Information Processing:Metabolism:Metabolism:Signal Transduction:Translation:Metabolism of Cofactors and Vitamins:Amino Acid Metabolism:Translation:Nucleotide Metabolism:Genetic Information Processing:Environmental Information Processing:Signal Transduction:Metabolism of Cofactors and Vitamins" 43 "Energy production and conversion:Energy production and conversion:Mg-dependent DNase:DNA-directed RNA polymerase, beta subunit/140 kD subunit:DNA-directed RNA polymerase, beta' subunit/160 kD subunit:Aspartate-semialdehyde dehydrogenase:Ribosomal protein S15P/S13E:1,4-alpha-glucan branching enzyme:Dihydrodipicolinate synthase/N-acetylneuraminate lyase:NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductases:ABC-type transport system involved in Fe-S cluster assembly, ATPase component:ATP-dependent Zn proteases:Selenocysteine lyase:Predicted hydrolase of the metallo-beta-lactamase superfamily:ABC-type transport system involved in Fe-S cluster assembly, permease component:6-pyruvoyl-tetrahydropterin synthase:Predicted transcriptional regulators:NADH:ubiquinone oxidoreductase subunit 3 (chain A):NADH:ubiquinone oxidoreductase 27 kD subunit:Rubredoxin:Uncharacterized protein related to plant photosystem II stability/assembly factor:L-asparaginase II:Amino acid transport and metabolism:Amino acid transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Oxidative phosphorylation:Purine metabolism:Pyrimidine metabolism:Alanine aspartate and glutamate metabolism:Glycine serine and threonine metabolism:Cysteine and methionine metabolism:Lysine biosynthesis:Selenocompound metabolism:Cyanoamino acid metabolism:Starch and sucrose metabolism:Thiamine metabolism:Folate biosynthesis:Nitrogen metabolism:Metabolic pathways:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Ribosome:RNA degradation:RNA polymerase:General function prediction only:General function prediction only:TIGR00010:MG423:dapA:S15_bact:FtsH_fam:asd_B:branching_enzym:nuoB_fam:sufC:sufS:sufD:rpoB:rpoC1_cyan:rpoC2_cyan:Folding Sorting and Degradation:Translation:Transcription:Genetic Information Processing:Metabolism of Cofactors and Vitamins:Metabolism of Other Amino Acids:Amino Acid Metabolism:Nucleotide Metabolism:Energy Metabolism:Carbohydrate Metabolism:Metabolism:Poorly characterized:Metabolism:Cellular processes and signaling:Carbohydrate Metabolism:Energy metabolism:Electron transport:Biosynthesis and degradation of polysaccharides:Transcription:DNA-dependent RNA polymerase:Protein synthesis:Ribosomal proteins: synthesis and modification:Protein fate:Degradation of proteins, peptides, and glycopeptides:Hypothetical proteins:Conserved:Unknown function:Enzymes of unknown specificity:Amino acid biosynthesis:Aspartate family:Biosynthesis of cofactors, prosthetic groups, and carriers:Other:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Information storage and processing:Biosynthesis of cofactors, prosthetic groups, and carriers:Amino acid biosynthesis:Unknown function:Hypothetical proteins:Protein fate:Protein synthesis:Transcription:Energy metabolism:Other:Aspartate family:Enzymes of unknown specificity:Conserved:Degradation of proteins, peptides, and glycopeptides:Ribosomal proteins: synthesis and modification:DNA-dependent RNA polymerase:Biosynthesis and degradation of polysaccharides:Electron transport:Global:Genetic Information Processing:Metabolism:Metabolism:Folding Sorting and Degradation:Translation:Transcription:Metabolism of Cofactors and Vitamins:Metabolism of Other Amino Acids:Amino Acid Metabolism:Nucleotide Metabolism:Global:Energy Metabolism:Metabolism" 44 "Energy production and conversion:Energy production and conversion:Sulfite reductase, beta subunit (hemoprotein):Glycosyltransferases involved in cell wall biogenesis:Kef-type K+ transport systems, membrane components:ABC-type phosphate transport system, permease component:Glutathione S-transferase:Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit:Glutamate racemase:N-acetylmuramoyl-L-alanine amidase:Multisubunit Na+/H+ antiporter, MnhC subunit:NADH:ubiquinone oxidoreductase subunit 4 (chain M):NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit:Cytochrome bd-type quinol oxidase, subunit 2:Precorrin isomerase:Secreted and surface protein containing fasciclin-like repeats:Predicted permease:Uncharacterized protein conserved in bacteria:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Oxidative phosphorylation:D-Glutamine and D-glutamate metabolism:Glutathione metabolism:Porphyrin and chlorophyll metabolism:Nitrogen metabolism:Metabolic pathways:Microbial metabolism in diverse environments:ABC transporters:General function prediction only:General function prediction only:Function unknown:Function unknown:glut_race:cydB:ndhF3_CO2:chpXY:NDH_I_M:phosphate_pstC:CobG:Transport and binding proteins:Anions:Biosynthesis of cofactors, prosthetic groups, and carriers:Heme, porphyrin, and cobalamin:Cell envelope:Biosynthesis and degradation of murein sacculus and peptidoglycan:Cellular processes and signaling:Metabolism:Poorly characterized:Poorly characterized:Metabolism:Cellular processes and signaling:Cell envelope:Biosynthesis of cofactors, prosthetic groups, and carriers:Transport and binding proteins:Energy metabolism:Biosynthesis and degradation of murein sacculus and peptidoglycan:Heme, porphyrin, and cobalamin:Anions:Photosynthesis:Electron transport:Global:Environmental Information Processing:Metabolism:Metabolism:Membrane Transport:Metabolism of Cofactors and Vitamins:Metabolism of Other Amino Acids:Metabolism of Other Amino Acids:Metabolism of Cofactors and Vitamins:Energy Metabolism:Environmental Information Processing:Membrane Transport:Global:Metabolism:Metabolism:Energy Metabolism:Energy metabolism:Electron transport:Photosynthesis" 45 "Energy production and conversion:Energy production and conversion:Gamma-glutamyl phosphate reductase:Peptide methionine sulfoxide reductase:GTP cyclohydrolase I:Translation initiation factor 2 (IF-2; GTPase):Transcriptional regulator:Serine/threonine protein phosphatase:2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases:Fe2+/Zn2+ uptake regulation proteins:Transcription termination factor:Zn-dependent alcohol dehydrogenases, class III:ATP-dependent protease Clp, ATPase subunit:DnaJ-class molecular chaperone:Uncharacterized conserved protein:Uncharacterized protein related to glutamine synthetase:Signal transduction histidine kinase:Bacteriophage capsid protein:Amino acid transport and metabolism:Amino acid transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Glycolysis / Gluconeogenesis:Fatty acid metabolism:Ubiquinone and other terpenoid-quinone biosynthesis:Alanine aspartate and glutamate metabolism:Arginine and proline metabolism:Tyrosine metabolism:Chloroalkane and chloroalkene degradation:Naphthalene degradation:Methane metabolism:Folate biosynthesis:Nitrogen metabolism:Metabolic pathways:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Two-component system:Mismatch repair:General function prediction only:General function prediction only:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:folE:sensory_box:small_GTP:clpX:msrA:proA:portal_lambda:nusB:Ubi-OHases:adh_III_F_hyde:PS_II_psbQ_bact:Metabolism of Cofactors and Vitamins:Amino Acid Metabolism:Genetic Information Processing:Replication and Repair:Lipid Metabolism:Environmental Information Processing:Signal Transduction:Energy Metabolism:Global:Metabolism:Carbohydrate Metabolism:Metabolism:Poorly characterized:Metabolism:Cellular processes and signaling:Information storage and processing:Biosynthesis of cofactors, prosthetic groups, and carriers:Amino acid biosynthesis:Unknown function:Mobile and extrachromosomal element functions:Cellular processes:Protein fate:Carbohydrate Metabolism:Energy metabolism:Fermentation:Photosynthesis:Regulatory functions:Small molecule interactions:Transcription:Transcription factors:Protein fate:Degradation of proteins, peptides, and glycopeptides:Cellular processes:Adaptations to atypical conditions:Mobile and extrachromosomal element functions:Prophage functions:Unknown function:General:Amino acid biosynthesis:Glutamate family:Biosynthesis of cofactors, prosthetic groups, and carriers:Folic acid:Menaquinone and ubiquinone:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Transcription:Regulatory functions:Energy metabolism:Menaquinone and ubiquinone:Folic acid:Glutamate family:General:Prophage functions:Adaptations to atypical conditions:Degradation of proteins, peptides, and glycopeptides:Transcription factors:Small molecule interactions:Photosynthesis:Fermentation:Global:Environmental Information Processing:Genetic Information Processing:Metabolism:Metabolism:Signal Transduction:Replication and Repair:Xenobiotics Biodegradation and Metabolism:Metabolism of Cofactors and Vitamins:Amino Acid Metabolism:Lipid Metabolism:Xenobiotics Biodegradation and Metabolism:Energy Metabolism" 46 "Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase):Leucyl aminopeptidase:Preprotein translocase subunit SecF:Predicted epimerase, PhzC/PhzF homolog:UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase:ATPases involved in chromosome partitioning:Predicted phosphatases:Na+/proline symporter:Predicted esterase:RNase PH:6-pyruvoyl-tetrahydropterin synthase:UDP-N-acetylglucosamine enolpyruvyl transferase:Acetyl-CoA carboxylase alpha subunit:Septum formation topological specificity factor:Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases):Glycosyltransferases, probably involved in cell wall biogenesis:Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain):4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family:Septum formation inhibitor-activating ATPase:Rhodanese-related sulfurtransferase:Flp pilus assembly protein TadD, contains TPR repeats:Cell cycle control, cell division, chromosome partitioning:Cell cycle control, cell division, chromosome partitioning:Amino acid transport and metabolism:Amino acid transport and metabolism:Nucleotide transport and metabolism:Nucleotide transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Fatty acid biosynthesis:Purine metabolism:Pyrimidine metabolism:Cysteine and methionine metabolism:Glutathione metabolism:Amino sugar and nucleotide sugar metabolism:Peptidoglycan biosynthesis:Glycerolipid metabolism:Pyruvate metabolism:Propanoate metabolism:One carbon pool by folate:Methane metabolism:Carbon fixation pathways in prokaryotes:Folate biosynthesis:Metabolic pathways:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Protein export:Bacterial secretion system:Sulfur relay system:Secondary metabolites biosynthesis, transport and catabolism:Secondary metabolites biosynthesis, transport and catabolism:General function prediction only:General function prediction only:mazG:accA:PhzF_family:2A0604s01:murA:purT:minE:HAD-SF-IA-v3:RNasePH:minD_bact:fghA_ester_D:Intracellular trafficking, secretion, and vesicular transport:Intracellular trafficking, secretion, and vesicular transport:Environmental Information Processing:Membrane Transport:Glycan Biosynthesis and Metabolism:Global:Metabolism:Metabolism of Other Amino Acids:Amino Acid Metabolism:Nucleotide Metabolism:Lipid Metabolism:Energy Metabolism:Carbohydrate Metabolism:Metabolism:Poorly characterized:Metabolism:Cellular processes and signaling:Information storage and processing:Carbohydrate Metabolism:Fatty acid and phospholipid metabolism:Biosynthesis:Purines, pyrimidines, nucleosides, and nucleotides:Purine ribonucleotide biosynthesis:Transcription:RNA processing:Protein fate:Protein and peptide secretion and trafficking:Cellular processes:Cell division:Toxin production and resistance:Detoxification:Unknown function:Enzymes of unknown specificity:General:Cell envelope:Biosynthesis and degradation of murein sacculus and peptidoglycan:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Cell envelope:Unknown function:Cellular processes:Protein fate:Transcription:Purines, pyrimidines, nucleosides, and nucleotides:Fatty acid and phospholipid metabolism:Biosynthesis and degradation of murein sacculus and peptidoglycan:General:Enzymes of unknown specificity:Detoxification:Toxin production and resistance:Cell division:Protein and peptide secretion and trafficking:RNA processing:Purine ribonucleotide biosynthesis:Biosynthesis:Global:Environmental Information Processing:Genetic Information Processing:Metabolism:Metabolism:Membrane Transport:Folding Sorting and Degradation:Metabolism of Cofactors and Vitamins:Glycan Biosynthesis and Metabolism:Metabolism of Other Amino Acids:Amino Acid Metabolism:Nucleotide Metabolism:Lipid Metabolism:Folding Sorting and Degradation:Energy Metabolism:Genetic Information Processing:Metabolism of Cofactors and Vitamins" 47 "Energy production and conversion:Energy production and conversion:Dimethyladenosine transferase (rRNA methylation):Glutamine synthetase:Predicted EndoIII-related endonuclease:Methionyl-tRNA formyltransferase:Fructose-2,6-bisphosphatase:ATPase involved in DNA repair:Glycosyltransferase:SAM-dependent methyltransferases:Single-stranded DNA-specific exonuclease:Predicted phosphatase/phosphohexomutase:Dehydrogenases (flavoproteins):Uncharacterized conserved protein:Cytochrome c, mono- and diheme variants:Uncharacterized conserved protein:Amino acid transport and metabolism:Amino acid transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Replication, recombination and repair:Replication, recombination and repair:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Photosynthesis:Alanine aspartate and glutamate metabolism:Arginine and proline metabolism:One carbon pool by folate:Carotenoid biosynthesis:Nitrogen metabolism:Aminoacyl-tRNA biosynthesis:Metabolic pathways:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Two-component system:Base excision repair:Mismatch repair:Homologous recombination:Secondary metabolites biosynthesis, transport and catabolism:Secondary metabolites biosynthesis, transport and catabolism:General function prediction only:General function prediction only:Function unknown:Function unknown:fmt:recJ:ksgA:nth:HAD-SF-IA-v3:carotene-cycl:gln_synth_III:Global:Metabolism:Cellular processes and signaling:Information storage and processing:DNA metabolism:DNA replication, recombination, and repair:Protein synthesis:tRNA aminoacylation:tRNA and rRNA base modification:Unknown function:Enzymes of unknown specificity:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Unknown function:Protein synthesis:DNA metabolism:Enzymes of unknown specificity:tRNA and rRNA base modification:tRNA aminoacylation:DNA replication, recombination, and repair:Global:Environmental Information Processing:Genetic Information Processing:Metabolism:Metabolism:Signal Transduction:Replication and Repair:Translation:Metabolism of Terpenoids and Polyketides:Metabolism of Cofactors and Vitamins:Metabolism of Cofactors and Vitamins:Amino Acid Metabolism:Metabolism of Terpenoids and Polyketides:Amino Acid Metabolism:Genetic Information Processing:Translation:Energy Metabolism:Replication and Repair:Metabolism:Poorly characterized:Energy Metabolism:Environmental Information Processing:Signal Transduction:Metabolism" 48 "Energy production and conversion:Energy production and conversion:Argininosuccinate synthase:Geranylgeranyl pyrophosphate synthase:Inorganic pyrophosphatase:Fructose-2,6-bisphosphatase:Aspartate/tyrosine/aromatic aminotransferase:Carbamoylphosphate synthase large subunit (split gene in MJ):Thiol-disulfide isomerase and thioredoxins:Isocitrate dehydrogenases:Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily:Preprotein translocase subunit YidC:NifU homolog involved in Fe-S cluster formation:Pyridoxal phosphate biosynthesis protein:Coenzyme F420-reducing hydrogenase, beta subunit:Glycosyltransferases, probably involved in cell wall biogenesis:Predicted metal-dependent membrane protease:Amino acid transport and metabolism:Amino acid transport and metabolism:Nucleotide transport and metabolism:Nucleotide transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Glycolysis / Gluconeogenesis:Citrate cycle (TCA cycle):Oxidative phosphorylation:Pyrimidine metabolism:Alanine aspartate and glutamate metabolism:Lysine biosynthesis:Arginine and proline metabolism:Glutathione metabolism:Glycerolipid metabolism:Methane metabolism:Carbon fixation pathways in prokaryotes:Vitamin B6 metabolism:Terpenoid backbone biosynthesis:Metabolic pathways:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Protein export:Bacterial secretion system:General function prediction only:General function prediction only:argG:prok_nadp_idh:pdxJ:thioredoxin:CPSaseII_lrg:SUF_scaf_2:DAPAT_plant:yidC_oxa1_cterm:Intracellular trafficking, secretion, and vesicular transport:Intracellular trafficking, secretion, and vesicular transport:Metabolism of Terpenoids and Polyketides:Poorly characterized:Genetic Information Processing:Folding Sorting and Degradation:Metabolism:Environmental Information Processing:Membrane Transport:Cellular processes and signaling:Global:Metabolism:Biosynthesis of cofactors, prosthetic groups, and carriers:Amino acid biosynthesis:Protein fate:Carbohydrate Metabolism:Energy metabolism:Electron transport:TCA cycle:Purines, pyrimidines, nucleosides, and nucleotides:Pyrimidine ribonucleotide biosynthesis:Protein fate:Protein and peptide secretion and trafficking:Amino acid biosynthesis:Glutamate family:Biosynthesis of cofactors, prosthetic groups, and carriers:Other:Pyridoxine:Cellular processes and signaling:Metabolism:Poorly characterized:Purines, pyrimidines, nucleosides, and nucleotides:Energy metabolism:Pyridoxine:Other:Glutamate family:Protein and peptide secretion and trafficking:Pyrimidine ribonucleotide biosynthesis:TCA cycle:Electron transport:Global:Environmental Information Processing:Genetic Information Processing:Metabolism:Metabolism:Membrane Transport:Folding Sorting and Degradation:Metabolism of Terpenoids and Polyketides:Metabolism of Cofactors and Vitamins:Metabolism of Other Amino Acids:Amino Acid Metabolism:Nucleotide Metabolism:Lipid Metabolism:Amino Acid Metabolism:Energy Metabolism:Nucleotide Metabolism:Lipid Metabolism:Energy Metabolism:Metabolism of Other Amino Acids:Carbohydrate Metabolism:Metabolism of Cofactors and Vitamins:Metabolism" 49 "Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division:ATP-dependent Zn proteases:ATPases with chaperone activity, ATP-binding subunit:Predicted membrane-associated Zn-dependent proteases 1:Predicted Fe-S-cluster redox enzyme:Anti-sigma regulatory factor (Ser/Thr protein kinase):Predicted metalloprotease:Tfp pilus assembly protein, pilus retraction ATPase PilT:Predicted membrane protein:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Cell motility:Cell motility:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:General function prediction only:General function prediction only:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:TIGR00048:TIGR00054:gidB:thioredoxin:FtsH_fam:pilT_fam:Intracellular trafficking, secretion, and vesicular transport:Intracellular trafficking, secretion, and vesicular transport:Chemotaxis and motility:tRNA and rRNA base modification:Degradation of proteins, peptides, and glycopeptides:Chemotaxis and motility:Energy metabolism:Protein synthesis:Protein fate:Cellular processes:Cellular processes and signaling:Poorly characterized:Energy metabolism:Electron transport:Protein synthesis:tRNA and rRNA base modification:Protein fate:Degradation of proteins, peptides, and glycopeptides:Cellular processes:Electron transport:Cellular processes and signaling:Poorly characterized" 50 "Guanosine polyphosphate pyrophosphohydrolases/synthetases:Membrane protease subunits, stomatin/prohibitin homologs:DNA primase (bacterial type):Serine acetyltransferase:Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold:Glycosyltransferases, probably involved in cell wall biogenesis:Uncharacterized conserved protein:Multidrug resistance efflux pump:Predicted transcriptional regulators:Uncharacterized protein conserved in bacteria:Beta-1,4-xylanase:Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain:Amino acid transport and metabolism:Amino acid transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Purine metabolism:Cysteine and methionine metabolism:Starch and sucrose metabolism:Sulfur metabolism:Metabolic pathways:Microbial metabolism in diverse environments:DNA replication:General function prediction only:General function prediction only:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:sensory_box:GGDEF:HDIG:spoT_relA:cysE:dnaG:Defense mechanisms:Defense mechanisms:Poorly characterized:Small molecule interactions:Energy Metabolism:Nucleotide Metabolism:Amino Acid Metabolism:Replication and Repair:Metabolism:Metabolism:Genetic Information Processing:Global:Small molecule interactions:DNA replication, recombination, and repair:Adaptations to atypical conditions:Serine family:Other:Regulatory functions:DNA metabolism:Cellular processes:Amino acid biosynthesis:Signal transduction:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Carbohydrate Metabolism:Energy Metabolism:Nucleotide Metabolism:Amino Acid Metabolism:Genetic Information Processing:Replication and Repair:Global:Metabolism:Regulatory functions:Carbohydrate Metabolism:DNA metabolism:DNA replication, recombination, and repair:Cellular processes:Adaptations to atypical conditions:Amino acid biosynthesis:Serine family:Signal transduction:Other:Information storage and processing:Cellular processes and signaling:Metabolism" 51 "Predicted ATPase of the PP-loop superfamily implicated in cell cycle control:SAM-dependent methyltransferases:DNA polymerase III, epsilon subunit and related 3'-5' exonucleases:Putative threonine efflux protein:Predicted transcriptional regulator:Phage protein D:Predicted O-methyltransferase:Uncharacterized protein, contains ParB-like nuclease domain:Uncharacterized conserved protein:Cell cycle control, cell division, chromosome partitioning:Cell cycle control, cell division, chromosome partitioning:Amino acid transport and metabolism:Amino acid transport and metabolism:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Purine metabolism:Pyrimidine metabolism:Phenylalanine metabolism:Metabolic pathways:Biosynthesis of secondary metabolites:DNA replication:Mismatch repair:Homologous recombination:Secondary metabolites biosynthesis, transport and catabolism:Secondary metabolites biosynthesis, transport and catabolism:General function prediction only:General function prediction only:Function unknown:Function unknown:rrf2_super:T_den_put_tspse:lysidine_TilS_N:Metabolism:Cellular processes and signaling:Information storage and processing:Protein synthesis:tRNA and rRNA base modification:Unknown function:General:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Unknown function:Protein synthesis:General:tRNA and rRNA base modification:Global:Genetic Information Processing:Metabolism:Metabolism:Replication and Repair:Nucleotide Metabolism:Amino Acid Metabolism:Amino Acid Metabolism:Metabolism:Genetic Information Processing:Replication and Repair:Poorly characterized:Metabolism:Nucleotide Metabolism:Global" 52 "Energy production and conversion:Energy production and conversion:Predicted Na+-dependent transporter:GMP synthase - Glutamine amidotransferase domain:DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32):Membrane proteins related to metalloendopeptidases:Ferredoxin:Glycosyltransferases, probably involved in cell wall biogenesis:Multidrug resistance efflux pump:Sugar transferases involved in lipopolysaccharide synthesis:Serine phosphatase RsbU, regulator of sigma subunit:Uncharacterized conserved protein:Tellurite resistance protein:Predicted integral membrane protein:Nucleotide transport and metabolism:Nucleotide transport and metabolism:Transcription:Transcription:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Starch and sucrose metabolism:Peptidoglycan biosynthesis:RNA polymerase:General function prediction only:General function prediction only:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:TIGR02450:sigma70-ECF:WcaJ_sugtrans:Defense mechanisms:Defense mechanisms:Information storage and processing:Carbohydrate Metabolism:Transcription:Genetic Information Processing:Glycan Biosynthesis and Metabolism:Carbohydrate Metabolism:Metabolism:Poorly characterized:Metabolism:Cellular processes and signaling:Information storage and processing:Genetic Information Processing:Metabolism:Transcription:Poorly characterized:Glycan Biosynthesis and Metabolism:Metabolism:Cellular processes and signaling" 53 "Cysteine synthase:DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32):Predicted Fe-S-cluster oxidoreductase:DNA-binding ferritin-like protein (oxidative damage protectant):Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases:Predicted nucleotidyltransferases:Uncharacterized conserved protein, contains double-stranded beta-helix domain:Tfp pilus assembly protein PilF:Uncharacterized conserved protein:Amino acid transport and metabolism:Amino acid transport and metabolism:Transcription:Transcription:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Cell motility:Cell motility:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Cysteine and methionine metabolism:Selenocompound metabolism:Sulfur metabolism:Metabolic pathways:Microbial metabolism in diverse environments:RNA polymerase:General function prediction only:General function prediction only:Function unknown:Function unknown:cysKM:RpoD_Cterm:Intracellular trafficking, secretion, and vesicular transport:Intracellular trafficking, secretion, and vesicular transport:Transcription:Amino Acid Metabolism:Metabolism of Other Amino Acids:Transcription:Metabolism:Metabolism:Genetic Information Processing:Global:Transcription factors:Serine family:Transcription:Amino acid biosynthesis:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Energy Metabolism:Amino Acid Metabolism:Metabolism of Other Amino Acids:Genetic Information Processing:Transcription:Global:Metabolism:Energy Metabolism:Transcription factors:Amino acid biosynthesis:Serine family:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized" 54 "Energy production and conversion:Energy production and conversion:Zn finger protein HypA/HybF (possibly regulating hydrogenase expression):Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase:Fructose-2,6-bisphosphatase:Predicted membrane metal-binding protein:Ni,Fe-hydrogenase maturation factor:Predicted endonuclease distantly related to archaeal Holliday junction resolvase:Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases):GTPase:Predicted GTPases:Uncharacterized protein conserved in bacteria:Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes:ABC-type sugar transport system, periplasmic component:NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit:Nitrate/nitrite transporter:Choline dehydrogenase and related flavoproteins:Arabinose efflux permease:Glycogen debranching enzyme:Amino acid transport and metabolism:Amino acid transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Glycolysis / Gluconeogenesis:Pentose phosphate pathway:Oxidative phosphorylation:Methane metabolism:Metabolic pathways:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Secondary metabolites biosynthesis, transport and catabolism:Secondary metabolites biosynthesis, transport and catabolism:General function prediction only:General function prediction only:Function unknown:Function unknown:hydrog_prot:hypB:hypA:small_GTP:TIGR00252:ComEC_N-term:gde_arch:Unknown function:General:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Protein fate:Biosynthesis and degradation of polysaccharides:Energy metabolism:Carbohydrate Metabolism:Metabolism:Global:Energy Metabolism:Carbohydrate Metabolism:Metabolism:Poorly characterized:Metabolism:Cellular processes and signaling:Information storage and processing:Unknown function:Hypothetical proteins:Protein fate:Energy metabolism:General:Conserved:Protein modification and repair:Biosynthesis and degradation of polysaccharides:Global:Metabolism:Metabolism:Protein modification and repair:Energy Metabolism:Hypothetical proteins:Conserved" 55 "Mismatch repair ATPase (MutS family):Translation initiation factor 1 (IF-1):ATPase involved in DNA replication initiation:FOG: CheY-like receiver:Mismatch repair ATPase (MutS family):Sortase and related acyltransferases:Uncharacterized low-complexity proteins:4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family:3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases:Uncharacterized protein conserved in bacteria:Antitoxin of toxin-antitoxin stability system:Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain:Cell cycle control, cell division, chromosome partitioning:Cell cycle control, cell division, chromosome partitioning:Lipid transport and metabolism:Lipid transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Replication, recombination and repair:Replication, recombination and repair:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Photosynthesis:Valine leucine and isoleucine degradation:Metabolic pathways:Two-component system:Mismatch repair:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:infA:sensory_box:DnaA:mutS2:mutS1:phd_fam:Translation factors:Mobile and extrachromosomal element functions:Other:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Small molecule interactions:Amino Acid Metabolism:Replication and Repair:Signal Transduction:Metabolism:Metabolism:Genetic Information Processing:Environmental Information Processing:Global:Small molecule interactions:Other:DNA replication, recombination, and repair:Translation factors:Other:Regulatory functions:DNA metabolism:Protein synthesis:Mobile and extrachromosomal element functions:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Energy Metabolism:Amino Acid Metabolism:Genetic Information Processing:Replication and Repair:Environmental Information Processing:Signal Transduction:Global:Metabolism:Regulatory functions:Energy Metabolism:DNA metabolism:Other:DNA replication, recombination, and repair:Protein synthesis" 56 "Queuine/archaeosine tRNA-ribosyltransferase:Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis:Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family:Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases:Anthranilate phosphoribosyltransferase:Prolipoprotein diacylglyceryltransferase:UDP-glucose 4-epimerase:ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain:Predicted membrane protein:Precorrin-4 methylase:Uncharacterized protein conserved in bacteria:Uncharacterized conserved protein:Amino acid transport and metabolism:Amino acid transport and metabolism:Nucleotide transport and metabolism:Nucleotide transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Galactose metabolism:Amino sugar and nucleotide sugar metabolism:Streptomycin biosynthesis:Inositol phosphate metabolism:Porphyrin and chlorophyll metabolism:Metabolic pathways:Biosynthesis of secondary metabolites:General function prediction only:General function prediction only:Function unknown:Function unknown:Q_tRNA_tgt:lgt:galE:cobM_cbiF:nitr_red_assoc:PPOX_FMN_cyano:Defense mechanisms:Defense mechanisms:Sugars:Protein synthesis:tRNA and rRNA base modification:Protein fate:Protein modification and repair:Unknown function:Enzymes of unknown specificity:Biosynthesis of cofactors, prosthetic groups, and carriers:Heme, porphyrin, and cobalamin:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Biosynthesis of cofactors, prosthetic groups, and carriers:Unknown function:Protein fate:Protein synthesis:Energy metabolism:Heme, porphyrin, and cobalamin:Enzymes of unknown specificity:Protein modification and repair:tRNA and rRNA base modification:Sugars:Global:Metabolism:Metabolism:Biosynthesis of Other Secondary Metabolites:Carbohydrate Metabolism:Metabolism of Cofactors and Vitamins:Metabolism:Poorly characterized:Metabolism of Cofactors and Vitamins:Metabolism:Biosynthesis of Other Secondary Metabolites:Cellular processes and signaling:Global:Metabolism:Information storage and processing:Carbohydrate Metabolism:Energy metabolism" 57 "ABC-type phosphate transport system, periplasmic component:Deoxyribose-phosphate aldolase:Guanosine polyphosphate pyrophosphohydrolases/synthetases:Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis:Signal transduction histidine kinase:Sulfate permease and related transporters (MFS superfamily):cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases:Fe2+/Zn2+ uptake regulation proteins:Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain:Predicted periplasmic or secreted lipoprotein:Predicted sugar phosphate isomerase:Antitoxin of toxin-antitoxin stability system:FOG: GGDEF domain:FOG: PAS/PAC domain:Uncharacterized conserved protein:Heat shock protein:Cephalosporin hydroxylase:Response regulator containing a CheY-like receiver domain and a GGDEF domain:Predicted ATP-binding protein involved in virulence:Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain:Cell cycle control, cell division, chromosome partitioning:Cell cycle control, cell division, chromosome partitioning:Nucleotide transport and metabolism:Nucleotide transport and metabolism:Transcription:Transcription:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Cell motility:Cell motility:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Pentose phosphate pathway:Purine metabolism:Amino sugar and nucleotide sugar metabolism:ABC transporters:Two-component system:General function prediction only:General function prediction only:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:deoC:sensory_box:GGDEF:TIGR00274:spoT_relA:phd_fam:ptsS_2:Defense mechanisms:Defense mechanisms:Signal transduction:Nucleotide Metabolism:Membrane Transport:Signal Transduction:Metabolism:Environmental Information Processing:Other:Small molecule interactions:Anions:Adaptations to atypical conditions:Other:Other:Biosynthesis and degradation of murein sacculus and peptidoglycan:Energy metabolism:Regulatory functions:Transport and binding proteins:Cellular processes:Mobile and extrachromosomal element functions:Signal transduction:Cell envelope:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Carbohydrate Metabolism:Nucleotide Metabolism:Environmental Information Processing:Membrane Transport:Signal Transduction:Energy metabolism:Other:Regulatory functions:Small molecule interactions:Transport and binding proteins:Anions:Cellular processes:Adaptations to atypical conditions:Mobile and extrachromosomal element functions:Other:Carbohydrate Metabolism:Other:Cell envelope:Biosynthesis and degradation of murein sacculus and peptidoglycan:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized" 58 "Energy production and conversion:Energy production and conversion:Dihydroorotase and related cyclic amidohydrolases:1-acyl-sn-glycerol-3-phosphate acyltransferase:3-oxoacyl-[acyl-carrier-protein] synthase III:ABC-type sugar transport system, permease component:Glycosyltransferase:Predicted metal-dependent phosphoesterases (PHP family):Dehydrogenases (flavoproteins):Spermidine/putrescine-binding periplasmic protein:dTDP-D-glucose 4,6-dehydratase:N-acetylglutamate synthase (N-acetylornithine aminotransferase):Cell division septal protein:NaMN:DMB phosphoribosyltransferase:Beta-lactamase class A:ABC-type sugar transport systems, ATPase components:Amino acid transport and metabolism:Amino acid transport and metabolism:Nucleotide transport and metabolism:Nucleotide transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Fatty acid biosynthesis:Pyrimidine metabolism:Arginine and proline metabolism:Streptomycin biosynthesis:Polyketide sugar unit biosynthesis:Glycerolipid metabolism:Glycerophospholipid metabolism:Carotenoid biosynthesis:Metabolic pathways:Biosynthesis of secondary metabolites:Two-component system:General function prediction only:General function prediction only:ArgJ:TIGR00303:AGP_acyltrn:fabH:pyrC_multi:dTDP_gluc_dehyt:carotene-cycl:Defense mechanisms:Defense mechanisms:Metabolism:Metabolism:Cellular processes and signaling:Fatty acid and phospholipid metabolism:Biosynthesis:Purines, pyrimidines, nucleosides, and nucleotides:Pyrimidine ribonucleotide biosynthesis:Hypothetical proteins:Conserved:Amino acid biosynthesis:Glutamate family:Cell envelope:Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides:Cellular processes and signaling:Metabolism:Poorly characterized:Cell envelope:Amino acid biosynthesis:Hypothetical proteins:Purines, pyrimidines, nucleosides, and nucleotides:Fatty acid and phospholipid metabolism:Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides:Glutamate family:Conserved:Pyrimidine ribonucleotide biosynthesis:Biosynthesis:Global:Environmental Information Processing:Metabolism:Metabolism:Signal Transduction:Biosynthesis of Other Secondary Metabolites:Metabolism of Terpenoids and Polyketides:Amino Acid Metabolism:Amino Acid Metabolism:Nucleotide Metabolism:Nucleotide Metabolism:Metabolism of Terpenoids and Polyketides:Lipid Metabolism:Metabolism:Biosynthesis of Other Secondary Metabolites:Poorly characterized:Environmental Information Processing:Signal Transduction:Lipid Metabolism:Global" 59 "Energy production and conversion:Energy production and conversion:Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase):5-enolpyruvylshikimate-3-phosphate synthase:Tyrosyl-tRNA synthetase:3-polyprenyl-4-hydroxybenzoate decarboxylase:Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family:1-acyl-sn-glycerol-3-phosphate acyltransferase:Orotidine-5'-phosphate decarboxylase:3-oxoacyl-[acyl-carrier-protein] synthase III:Anthranilate phosphoribosyltransferase:Dehydrogenases (flavoproteins):Shikimate kinase:Septum formation topological specificity factor:Sortase and related acyltransferases:Ribosomal protein L11 methylase:Septum formation inhibitor-activating ATPase:Acetyl/propionyl-CoA carboxylase, alpha subunit:Cell cycle control, cell division, chromosome partitioning:Cell cycle control, cell division, chromosome partitioning:Amino acid transport and metabolism:Amino acid transport and metabolism:Nucleotide transport and metabolism:Nucleotide transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Fatty acid biosynthesis:Ubiquinone and other terpenoid-quinone biosynthesis:Purine metabolism:Pyrimidine metabolism:Cysteine and methionine metabolism:Phenylalanine tyrosine and tryptophan biosynthesis:Lipopolysaccharide biosynthesis:Glycerolipid metabolism:Glycerophospholipid metabolism:Pyruvate metabolism:Propanoate metabolism:Carbon fixation pathways in prokaryotes:Carotenoid biosynthesis:Aminoacyl-tRNA biosynthesis:Metabolic pathways:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:tyrS:prmA:ubiX_pad:salvage_mtnA:accC:AGP_acyltrn:fabH:purK:minE:trpD:aroA:pyrF:minD_bact:Translation:Amino Acid Metabolism:Global:Metabolism:Nucleotide Metabolism:Lipid Metabolism:Energy Metabolism:Carbohydrate Metabolism:Metabolism:Metabolism:Cellular processes and signaling:Information storage and processing:Amino acid biosynthesis:Unknown function:Cellular processes:Carbohydrate Metabolism:Fatty acid and phospholipid metabolism:Biosynthesis:Purines, pyrimidines, nucleosides, and nucleotides:Purine ribonucleotide biosynthesis:Pyrimidine ribonucleotide biosynthesis:Protein synthesis:tRNA aminoacylation:Ribosomal proteins: synthesis and modification:Cellular processes:Cell division:Unknown function:Enzymes of unknown specificity:Amino acid biosynthesis:Aromatic amino acid family:Aspartate family:Information storage and processing:Cellular processes and signaling:Metabolism:Protein synthesis:Purines, pyrimidines, nucleosides, and nucleotides:Fatty acid and phospholipid metabolism:Aspartate family:Aromatic amino acid family:Enzymes of unknown specificity:Cell division:Ribosomal proteins: synthesis and modification:tRNA aminoacylation:Pyrimidine ribonucleotide biosynthesis:Purine ribonucleotide biosynthesis:Biosynthesis:Global:Genetic Information Processing:Metabolism:Metabolism:Translation:Metabolism of Terpenoids and Polyketides:Metabolism of Cofactors and Vitamins:Glycan Biosynthesis and Metabolism:Amino Acid Metabolism:Nucleotide Metabolism:Lipid Metabolism:Metabolism of Cofactors and Vitamins:Energy Metabolism:Metabolism of Terpenoids and Polyketides:Glycan Biosynthesis and Metabolism:Genetic Information Processing" 60 "Energy production and conversion:Energy production and conversion:Dihydroorotate dehydrogenase:Glycerol dehydrogenase and related enzymes:Predicted ATPase with chaperone activity:Signal transduction histidine kinase:Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit:Transcriptional regulator:NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit:NADH:ubiquinone oxidoreductase 24 kD subunit:Coenzyme F420-reducing hydrogenase, gamma subunit:Putative protein-S-isoprenylcysteine methyltransferase:Choline dehydrogenase and related flavoproteins:Coenzyme F420-reducing hydrogenase, alpha subunit:Amino acid transport and metabolism:Amino acid transport and metabolism:Nucleotide transport and metabolism:Nucleotide transport and metabolism:Transcription:Transcription:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Oxidative phosphorylation:Pyrimidine metabolism:Glycerolipid metabolism:Metabolic pathways:Two-component system:Signal transduction mechanisms:Signal transduction mechanisms:TIGR00368:pyruv_ox_red:Environmental Information Processing:Unknown function:General:Information storage and processing:Cellular processes and signaling:Metabolism:Nucleotide Metabolism:Lipid Metabolism:Energy Metabolism:Metabolism:Metabolism:Cellular processes and signaling:Information storage and processing:Unknown function:General:Global:Environmental Information Processing:Metabolism:Metabolism:Signal Transduction:Nucleotide Metabolism:Signal Transduction:Lipid Metabolism:Energy Metabolism:Global:Metabolism" 61 "Energy production and conversion:Energy production and conversion:Predicted sugar kinase:Molecular chaperone, HSP90 family:Uncharacterized conserved protein:Glycosyltransferase:K+ transport systems, NAD-binding component:DNA polymerase III, alpha subunit:Ferredoxin:Signal transduction histidine kinase:Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain:ABC-type multidrug transport system, permease component:ABC-type multidrug transport system, ATPase component:Predicted sugar phosphate isomerase:Phosphoenolpyruvate carboxylase:Rhodanese-related sulfurtransferase:Uncharacterized protein involved in cation transport:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Photosynthesis:Purine metabolism:Pyrimidine metabolism:Cysteine and methionine metabolism:Amino sugar and nucleotide sugar metabolism:Pyruvate metabolism:Methane metabolism:Carbon fixation in photosynthetic organisms:Carbon fixation pathways in prokaryotes:Nicotinate and nicotinamide metabolism:Metabolic pathways:Microbial metabolism in diverse environments:ABC transporters:Two-component system:DNA replication:Mismatch repair:Homologous recombination:Sulfur relay system:General function prediction only:General function prediction only:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:TIGR00149_YbjQ:TIGR00274:polc:fdx_plant:Defense mechanisms:Defense mechanisms:Carbohydrate Metabolism:DNA metabolism:DNA replication, recombination, and repair:Unknown function:Enzymes of unknown specificity:Cell envelope:Biosynthesis and degradation of murein sacculus and peptidoglycan:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Cell envelope:Unknown function:DNA metabolism:Biosynthesis and degradation of murein sacculus and peptidoglycan:Enzymes of unknown specificity:DNA replication, recombination, and repair:Global:Environmental Information Processing:Genetic Information Processing:Metabolism:Metabolism:Signal Transduction:Membrane Transport:Replication and Repair:Folding Sorting and Degradation:Metabolism of Cofactors and Vitamins:Amino Acid Metabolism:Nucleotide Metabolism:Energy Metabolism:Energy Metabolism:Carbohydrate Metabolism:Metabolism:Nucleotide Metabolism:Poorly characterized:Metabolism:Amino Acid Metabolism:Cellular processes and signaling:Metabolism of Cofactors and Vitamins:Information storage and processing:Genetic Information Processing:Folding Sorting and Degradation:Replication and Repair:Environmental Information Processing:Membrane Transport:Signal Transduction:Global:Metabolism" 62 "Energy production and conversion:Energy production and conversion:Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase:Predicted ATPase with chaperone activity:NAD/NADP transhydrogenase beta subunit:Coenzyme F420-reducing hydrogenase, gamma subunit:Uncharacterized protein conserved in bacteria:Coenzyme F420-reducing hydrogenase, alpha subunit:NAD/NADP transhydrogenase alpha subunit:Uncharacterized protein involved in ubiquinone biosynthesis:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Glycolysis / Gluconeogenesis:Oxidative phosphorylation:Nicotinate and nicotinamide metabolism:Metabolic pathways:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Function unknown:Function unknown:TIGR00368:GAPDH-I:Energy metabolism:Energy Metabolism:Metabolism of Cofactors and Vitamins:Metabolism:Metabolism:Global:Glycolysis/gluconeogenesis:General:Energy metabolism:Unknown function:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Carbohydrate Metabolism:Energy Metabolism:Metabolism of Cofactors and Vitamins:Global:Metabolism:Carbohydrate Metabolism:Glycolysis/gluconeogenesis:Unknown function:General:Cellular processes and signaling:Metabolism:Poorly characterized" 63 "Energy production and conversion:Energy production and conversion:Arginyl-tRNA synthetase:Tryptophanyl-tRNA synthetase:4-hydroxybenzoate polyprenyltransferase and related prenyltransferases:Predicted amidohydrolase:Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis:Kef-type K+ transport systems, membrane components:Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily):Dehydrogenases (flavoproteins):Glycyl-tRNA synthetase, alpha subunit:ADP-heptose:LPS heptosyltransferase:NADH:ubiquinone oxidoreductase subunit 4 (chain M):Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases):Phosphomannomutase:Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon):ABC-type molybdate transport system, ATPase component:Predicted bile acid beta-glucosidase:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Glycolysis / Gluconeogenesis:Pentose phosphate pathway:Fructose and mannose metabolism:Galactose metabolism:Fatty acid biosynthesis:Oxidative phosphorylation:Purine metabolism:Chlorocyclohexane and chlorobenzene degradation:Tryptophan metabolism:Starch and sucrose metabolism:Amino sugar and nucleotide sugar metabolism:Streptomycin biosynthesis:Chloroalkane and chloroalkene degradation:Porphyrin and chlorophyll metabolism:Aminoacyl-tRNA biosynthesis:Biosynthesis of unsaturated fatty acids:Metabolic pathways:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:ABC transporters:Secondary metabolites biosynthesis, transport and catabolism:Secondary metabolites biosynthesis, transport and catabolism:General function prediction only:General function prediction only:trpS:glyQ:argS:chlor_syn_BchG:3oxo_ACP_reduc:NDH_I_M:GG-red-SF:Translation:Lipid Metabolism:Environmental Information Processing:Membrane Transport:Energy Metabolism:Global:Metabolism:Carbohydrate Metabolism:Metabolism:Poorly characterized:Carbohydrate Metabolism:Energy metabolism:Electron transport:Fatty acid and phospholipid metabolism:Biosynthesis:Protein synthesis:tRNA aminoacylation:Biosynthesis of cofactors, prosthetic groups, and carriers:Chlorophyll and bacteriochlorphyll:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Cellular processes and signaling:Information storage and processing:Biosynthesis of cofactors, prosthetic groups, and carriers:Protein synthesis:Fatty acid and phospholipid metabolism:Energy metabolism:Chlorophyll and bacteriochlorphyll:tRNA aminoacylation:Biosynthesis:Electron transport:Global:Environmental Information Processing:Genetic Information Processing:Metabolism:Metabolism:Membrane Transport:Translation:Xenobiotics Biodegradation and Metabolism:Biosynthesis of Other Secondary Metabolites:Metabolism of Cofactors and Vitamins:Amino Acid Metabolism:Nucleotide Metabolism:Lipid Metabolism:Biosynthesis of Other Secondary Metabolites:Energy Metabolism:Metabolism of Cofactors and Vitamins:Xenobiotics Biodegradation and Metabolism:Amino Acid Metabolism:Nucleotide Metabolism:Genetic Information Processing" 64 "Energy production and conversion:Energy production and conversion:NhaP-type Na+/H+ and K+/H+ antiporters:Queuine/archaeosine tRNA-ribosyltransferase:Predicted integral membrane protein:Glycosyltransferase:Predicted GTPase:Superfamily II DNA/RNA helicases, SNF2 family:tRNA nucleotidyltransferase/poly(A) polymerase:Predicted unusual protein kinase:ABC-type dipeptide transport system, periplasmic component:Fe-S oxidoreductase:ABC-type (unclassified) transport system, ATPase component:ABC-type transport system involved in multi-copper enzyme maturation, permease component:Transcriptional regulator:Uncharacterized conserved protein:ABC-type uncharacterized transport system involved in gliding motility, auxiliary component:ABC-type phosphate/phosphonate transport system, permease component:Amino acid transport and metabolism:Amino acid transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Cell motility:Cell motility:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:ABC transporters:RNA degradation:General function prediction only:General function prediction only:Function unknown:Function unknown:small_GTP:lytR_cpsA_psr:TIGR00374:Q_tRNA_tgt:HEQRo_perm_3TM:S_layer_CsaB:Unknown function:Membrane Transport:Genetic Information Processing:Environmental Information Processing:Other:tRNA and rRNA base modification:Protein and peptide secretion and trafficking:Amino acids, peptides and amines:Conserved:General:Regulatory functions:Protein synthesis:Protein fate:Transport and binding proteins:Hypothetical proteins:Unknown function:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Genetic Information Processing:Folding Sorting and Degradation:Environmental Information Processing:Membrane Transport:Regulatory functions:Other:Protein synthesis:tRNA and rRNA base modification:Protein fate:Protein and peptide secretion and trafficking:Transport and binding proteins:Amino acids, peptides and amines:Hypothetical proteins:Conserved:Folding Sorting and Degradation:General:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized" 65 "Energy production and conversion:Energy production and conversion:Nuclease subunit of the excinuclease complex:Ribosomal protein L9:Predicted amidohydrolase:Biotin synthase and related enzymes:ATPase involved in DNA replication initiation:cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases:Transposase and inactivated derivatives:tmRNA-binding protein:Holliday junction resolvasome, endonuclease subunit:Predicted GTPases:Chromosome segregation ATPases:Glycosyltransferases, probably involved in cell wall biogenesis:Metal-dependent amidase/aminoacylase/carboxypeptidase:DNA uptake protein and related DNA-binding proteins:Fe-S oxidoreductase, related to NifB/MoaA family:N-acetylglucosamine-6-phosphate deacetylase:D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4):Secreted and surface protein containing fasciclin-like repeats:Tfp pilus assembly protein PilF:Heat shock protein:Cell cycle control, cell division, chromosome partitioning:Cell cycle control, cell division, chromosome partitioning:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Replication, recombination and repair:Replication, recombination and repair:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Cell motility:Cell motility:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Arginine and proline metabolism:Amino sugar and nucleotide sugar metabolism:Peptidoglycan biosynthesis:Biotin metabolism:Metabolic pathways:Biosynthesis of secondary metabolites:Two-component system:Ribosome:Nucleotide excision repair:Homologous recombination:General function prediction only:General function prediction only:Signal transduction mechanisms:Signal transduction mechanisms:smpB:TIGR00157:L9:uvrC:nagA:DnaA:bioB:PBP4:amidohydrolases:SMC_prok_B:cyano_FeS_chp:Intracellular trafficking, secretion, and vesicular transport:Intracellular trafficking, secretion, and vesicular transport:DNA metabolism:Amino Acid Metabolism:Glycan Biosynthesis and Metabolism:Metabolism of Cofactors and Vitamins:Translation:Replication and Repair:Signal Transduction:Metabolism:Metabolism:Genetic Information Processing:Environmental Information Processing:Global:Amino sugars:DNA replication, recombination, and repair:Chromosome-associated proteins:Other:Ribosomal proteins: synthesis and modification:Translation factors:Degradation of proteins, peptides, and glycopeptides:Biotin:Biosynthesis and degradation of murein sacculus and peptidoglycan:Central intermediary metabolism:DNA metabolism:Protein synthesis:Protein fate:Biosynthesis of cofactors, prosthetic groups, and carriers:Cell envelope:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Carbohydrate Metabolism:Amino Acid Metabolism:Glycan Biosynthesis and Metabolism:Metabolism of Cofactors and Vitamins:Genetic Information Processing:Translation:Replication and Repair:Environmental Information Processing:Signal Transduction:Global:Metabolism:Central intermediary metabolism:Amino sugars:Carbohydrate Metabolism:DNA replication, recombination, and repair:Chromosome-associated proteins:Protein synthesis:Other:Ribosomal proteins: synthesis and modification:Translation factors:Protein fate:Degradation of proteins, peptides, and glycopeptides:Biosynthesis of cofactors, prosthetic groups, and carriers:Biotin:Cell envelope:Biosynthesis and degradation of murein sacculus and peptidoglycan:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized" 66 "Energy production and conversion:Energy production and conversion:Undecaprenyl pyrophosphate synthase:Ribosomal protein S14:Ribosomal protein L27:Protoheme ferro-lyase (ferrochelatase):Ribosomal protein L9:Acetyltransferases:DNA polymerase sliding clamp subunit (PCNA homolog):NADH:ubiquinone oxidoreductase subunit 4 (chain M):Long-chain acyl-CoA synthetases (AMP-forming):Ferredoxin:Peroxiredoxin:Intein/homing endonuclease:Outer membrane protein:S-adenosylmethionine decarboxylase:Uncharacterized conserved protein:Uncharacterized conserved protein:Sugar transferases involved in lipopolysaccharide synthesis:Uncharacterized protein, similar to the N-terminal domain of Lon protease:Amino acid transport and metabolism:Amino acid transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Replication, recombination and repair:Replication, recombination and repair:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Fatty acid metabolism:Oxidative phosphorylation:Purine metabolism:Pyrimidine metabolism:Cysteine and methionine metabolism:Arginine and proline metabolism:Porphyrin and chlorophyll metabolism:Terpenoid backbone biosynthesis:Metabolic pathways:Biosynthesis of secondary metabolites:Ribosome:DNA replication:Mismatch repair:Homologous recombination:General function prediction only:General function prediction only:Function unknown:Function unknown:S21p:uppS:L27:hemH:L9:TIGR00159:rlpA:dnan:intein_Cterm:NDH_I_M:WcaJ_sugtrans:SAM_DCase_Bsu:Intracellular trafficking, secretion, and vesicular transport:Intracellular trafficking, secretion, and vesicular transport:Central intermediary metabolism:Lipid Metabolism:Nucleotide Metabolism:Amino Acid Metabolism:Metabolism of Cofactors and Vitamins:Metabolism of Terpenoids and Polyketides:Translation:Replication and Repair:Metabolism:Metabolism:Genetic Information Processing:Global:Polyamine biosynthesis:Electron transport:DNA replication, recombination, and repair:Ribosomal proteins: synthesis and modification:Conserved:Heme, porphyrin, and cobalamin:Other:Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides:Central intermediary metabolism:Energy metabolism:DNA metabolism:Protein synthesis:Hypothetical proteins:Biosynthesis of cofactors, prosthetic groups, and carriers:Cell envelope:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Energy Metabolism:Lipid Metabolism:Nucleotide Metabolism:Amino Acid Metabolism:Metabolism of Cofactors and Vitamins:Metabolism of Terpenoids and Polyketides:Genetic Information Processing:Translation:Replication and Repair:Global:Metabolism:Energy Metabolism:Polyamine biosynthesis:Energy metabolism:Electron transport:DNA metabolism:DNA replication, recombination, and repair:Protein synthesis:Ribosomal proteins: synthesis and modification:Hypothetical proteins:Conserved:Biosynthesis of cofactors, prosthetic groups, and carriers:Heme, porphyrin, and cobalamin:Cell envelope:Other:Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized" 67 "DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32):Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain:Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes:Uncharacterized protein conserved in bacteria:Tfp pilus assembly protein, pilus retraction ATPase PilT:Predicted transcriptional regulator:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Transcription:Transcription:Cell motility:Cell motility:Two-component system:RNA polymerase:General function prediction only:General function prediction only:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:TIGR00423:pilT_fam:sigma70-ECF:Intracellular trafficking, secretion, and vesicular transport:Intracellular trafficking, secretion, and vesicular transport:Hypothetical proteins:Signal Transduction:Genetic Information Processing:Environmental Information Processing:Chemotaxis and motility:Conserved:Cellular processes:Hypothetical proteins:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Genetic Information Processing:Transcription:Environmental Information Processing:Signal Transduction:Cellular processes:Chemotaxis and motility:Transcription:Conserved:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized" 68 "Energy production and conversion:Energy production and conversion:Predicted sugar kinase:Dihydroorotate dehydrogenase:Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases:6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase:ATPases of the AAA+ class:Molybdopterin biosynthesis enzymes:Holliday junction resolvasome, DNA-binding subunit:ABC-type dipeptide transport system, periplasmic component:Polyphosphate kinase:Predicted GTPases:Cobalamin biosynthesis protein CobN and related Mg-chelatases:Rubrerythrin:ABC-type sugar transport system, periplasmic component:N-acetylglucosamine-6-phosphate deacetylase:Predicted enolase-phosphatase:Amino acid transport and metabolism:Amino acid transport and metabolism:Nucleotide transport and metabolism:Nucleotide transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Replication, recombination and repair:Replication, recombination and repair:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Oxidative phosphorylation:Pyrimidine metabolism:Cysteine and methionine metabolism:Amino sugar and nucleotide sugar metabolism:Lipopolysaccharide biosynthesis:Porphyrin and chlorophyll metabolism:Metabolic pathways:ABC transporters:RNA degradation:Homologous recombination:General function prediction only:General function prediction only:ruvA:TIGR00157:molyb_syn:yjeF_cterm:mreC:nagA:pyrD_sub2:HAD-SF-IA-v1:cobalto_cobN:salvage_mtnB:poly_P_kin:Pyrimidine ribonucleotide biosynthesis:DNA metabolism:DNA replication, recombination, and repair:Protein synthesis:Translation factors:Unknown function:Enzymes of unknown specificity:General:Amino acid biosynthesis:Aspartate family:Biosynthesis of cofactors, prosthetic groups, and carriers:Heme, porphyrin, and cobalamin:Cell envelope:Biosynthesis and degradation of murein sacculus and peptidoglycan:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Environmental Information Processing:Energy Metabolism:Nucleotide Metabolism:Amino Acid Metabolism:Glycan Biosynthesis and Metabolism:Metabolism of Cofactors and Vitamins:Folding Sorting and Degradation:Replication and Repair:Membrane Transport:Metabolism:Metabolism:Genetic Information Processing:Environmental Information Processing:Global:Amino sugars:Phosphorus compounds:Pyrimidine ribonucleotide biosynthesis:DNA replication, recombination, and repair:Translation factors:Enzymes of unknown specificity:General:Aspartate family:Heme, porphyrin, and cobalamin:Biosynthesis and degradation of murein sacculus and peptidoglycan:Central intermediary metabolism:Purines, pyrimidines, nucleosides, and nucleotides:DNA metabolism:Protein synthesis:Unknown function:Amino acid biosynthesis:Biosynthesis of cofactors, prosthetic groups, and carriers:Cell envelope:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Carbohydrate Metabolism:Energy Metabolism:Nucleotide Metabolism:Amino Acid Metabolism:Glycan Biosynthesis and Metabolism:Metabolism of Cofactors and Vitamins:Genetic Information Processing:Folding Sorting and Degradation:Replication and Repair:Carbohydrate Metabolism:Membrane Transport:Global:Metabolism:Central intermediary metabolism:Amino sugars:Phosphorus compounds:Purines, pyrimidines, nucleosides, and nucleotides" 69 "Energy production and conversion:Energy production and conversion:Phosphoribosylanthranilate isomerase:Anaerobic dehydrogenases, typically selenocysteine-containing:ABC-type branched-chain amino acid transport systems, ATPase component:DNA repair exonuclease:ATPases of the AAA+ class:Predicted permease:Na+/H+ antiporter NhaD and related arsenite permeases:ABC-type (unclassified) transport system, ATPase component:Phosphohistidine phosphatase SixA:Fatty acid desaturase:Phage-related baseplate assembly protein:Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit:L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily:Amino acid transport and metabolism:Amino acid transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Replication, recombination and repair:Replication, recombination and repair:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Ubiquinone and other terpenoid-quinone biosynthesis:Phenylalanine tyrosine and tryptophan biosynthesis:Nitrogen metabolism:Metabolic pathways:Biosynthesis of secondary metabolites:ABC transporters:General function prediction only:General function prediction only:Signal transduction mechanisms:Signal transduction mechanisms:sixA:menC_gamma/gm+:Biosynthesis of cofactors, prosthetic groups, and carriers:Amino Acid Metabolism:Metabolism of Cofactors and Vitamins:Membrane Transport:Metabolism:Metabolism:Environmental Information Processing:Global:Protein interactions:Menaquinone and ubiquinone:Regulatory functions:Biosynthesis of cofactors, prosthetic groups, and carriers:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Energy Metabolism:Amino Acid Metabolism:Metabolism of Cofactors and Vitamins:Environmental Information Processing:Membrane Transport:Global:Metabolism:Regulatory functions:Protein interactions:Energy Metabolism:Menaquinone and ubiquinone:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized" 70 "Chloride channel protein EriC:Isopropylmalate/homocitrate/citramalate synthases:Predicted glutamine amidotransferase:6-phosphofructokinase:Sugar kinases, ribokinase family:Na+-driven multidrug efflux pump:Predicted phosphatases:Predicted transcriptional regulators:Nicotinic acid mononucleotide adenylyltransferase:Chromate transport protein ChrA:Predicted nuclease (RecB family):Predicted nucleic acid-binding protein, contains PIN domain:Predicted nucleic-acid-binding protein implicated in transcription termination:Plasmid maintenance system antidote protein:Uncharacterized protein conserved in bacteria:Uncharacterized protein conserved in bacteria:Lignostilbene-alpha,beta-dioxygenase and related enzymes:Amino acid transport and metabolism:Amino acid transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Transcription:Transcription:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Glycolysis / Gluconeogenesis:Pentose phosphate pathway:Fructose and mannose metabolism:Galactose metabolism:Valine leucine and isoleucine biosynthesis:Starch and sucrose metabolism:Amino sugar and nucleotide sugar metabolism:Pyruvate metabolism:Glyoxylate and dicarboxylate metabolism:Methane metabolism:Nicotinate and nicotinamide metabolism:Metabolic pathways:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Two-component system:Secondary metabolites biosynthesis, transport and catabolism:Secondary metabolites biosynthesis, transport and catabolism:General function prediction only:General function prediction only:Function unknown:Function unknown:matE:2A51:LeuA_rel:HAD-SF-IA-v1:antidote_HigA:TIGR03491:Defense mechanisms:Defense mechanisms:Anions:Energy Metabolism:Amino Acid Metabolism:Metabolism of Cofactors and Vitamins:Signal Transduction:Metabolism:Metabolism:Environmental Information Processing:Global:Anions:Other:Other:Enzymes of unknown specificity:General:Transport and binding proteins:Mobile and extrachromosomal element functions:Unknown function:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Carbohydrate Metabolism:Energy Metabolism:Amino Acid Metabolism:Metabolism of Cofactors and Vitamins:Environmental Information Processing:Signal Transduction:Global:Metabolism:Transport and binding proteins:Carbohydrate Metabolism:Other:Mobile and extrachromosomal element functions:Other:Unknown function:Enzymes of unknown specificity:General:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized" 71 "Energy production and conversion:Energy production and conversion:Methionyl-tRNA formyltransferase:FAD/FMN-containing dehydrogenases:Hydrogenase maturation factor:Predicted transcriptional regulators:Fe2+/Zn2+ uptake regulation proteins:Predicted ATP-dependent serine protease:Predicted extracellular nuclease:Predicted protein-tyrosine phosphatase:Uncharacterized conserved protein:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:One carbon pool by folate:Aminoacyl-tRNA biosynthesis:Two-component system:General function prediction only:General function prediction only:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:sms:fmt:T_den_put_tspse:hypE:Protein synthesis:Translation:Signal Transduction:Metabolism:Genetic Information Processing:Environmental Information Processing:DNA replication, recombination, and repair:tRNA aminoacylation:DNA metabolism:Protein synthesis:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Metabolism of Cofactors and Vitamins:Genetic Information Processing:Translation:Environmental Information Processing:Signal Transduction:DNA metabolism:DNA replication, recombination, and repair:Metabolism of Cofactors and Vitamins:tRNA aminoacylation:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized" 72 "Energy production and conversion:Energy production and conversion:Acetylglutamate semialdehyde dehydrogenase:3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases:Isoleucyl-tRNA synthetase:Conserved domain frequently associated with peptide methionine sulfoxide reductase:Carbonic anhydrase:Short-chain dehydrogenases of various substrate specificities:Predicted membrane protein:4-hydroxybenzoate polyprenyltransferase and related prenyltransferases:Transcriptional regulator:Sec-independent protein secretion pathway component TatC:ABC-type multidrug transport system, ATPase and permease components:ABC-type antimicrobial peptide transport system, ATPase component:FOG: HEAT repeat:ABC-type polysaccharide/polyol phosphate export systems, permease component:ABC-type Fe3+ transport system, periplasmic component:Uncharacterized conserved protein:Plastocyanin:Amino acid transport and metabolism:Amino acid transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Ubiquinone and other terpenoid-quinone biosynthesis:Photosynthesis:Valine leucine and isoleucine biosynthesis:Lysine biosynthesis:Arginine and proline metabolism:Glycerolipid metabolism:Glycerophospholipid metabolism:Nitrogen metabolism:Aminoacyl-tRNA biosynthesis:Metabolic pathways:Biosynthesis of secondary metabolites:ABC transporters:Protein export:Bacterial secretion system:General function prediction only:General function prediction only:Function unknown:Function unknown:TIGR00023:TIGR00148:TIGR00357:ileS:tatC:ubiA_proteo:argC:cyanin_plasto:Intracellular trafficking, secretion, and vesicular transport:Intracellular trafficking, secretion, and vesicular transport:Defense mechanisms:Defense mechanisms:Photosynthesis:Lipid Metabolism:Amino Acid Metabolism:Metabolism of Cofactors and Vitamins:Translation:Folding Sorting and Degradation:Membrane Transport:Metabolism:Metabolism:Genetic Information Processing:Environmental Information Processing:Global:Photosynthesis:Biosynthesis:tRNA aminoacylation:Protein and peptide secretion and trafficking:Adaptations to atypical conditions:General:Glutamate family:Menaquinone and ubiquinone:Energy metabolism:Fatty acid and phospholipid metabolism:Protein synthesis:Protein fate:Cellular processes:Unknown function:Amino acid biosynthesis:Biosynthesis of cofactors, prosthetic groups, and carriers:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Energy Metabolism:Lipid Metabolism:Amino Acid Metabolism:Metabolism of Cofactors and Vitamins:Genetic Information Processing:Translation:Folding Sorting and Degradation:Environmental Information Processing:Membrane Transport:Global:Metabolism:Energy metabolism:Energy Metabolism:Fatty acid and phospholipid metabolism:Biosynthesis:Protein synthesis:tRNA aminoacylation:Protein fate:Protein and peptide secretion and trafficking:Cellular processes:Adaptations to atypical conditions:Unknown function:General:Amino acid biosynthesis:Glutamate family:Biosynthesis of cofactors, prosthetic groups, and carriers:Menaquinone and ubiquinone:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized" 73 "Energy production and conversion:Energy production and conversion:Ribosomal protein L28:Malic enzyme:Peroxiredoxin:Thioredoxin reductase:Universal stress protein UspA and related nucleotide-binding proteins:Superoxide dismutase:Glutathione S-transferase:Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain:ABC-type metal ion transport system, periplasmic component/surface adhesin:Glucokinase:Fe-S-cluster-containing hydrogenase components 2:Peroxiredoxin:ABC-type Fe3+ transport system, periplasmic component:SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase:Peptidylarginine deiminase and related enzymes:Uncharacterized protein conserved in bacteria:Uncharacterized protein conserved in bacteria:Amino acid transport and metabolism:Amino acid transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Glycolysis / Gluconeogenesis:Galactose metabolism:Photosynthesis - antenna proteins:Pyrimidine metabolism:Histidine metabolism:Tyrosine metabolism:Selenocompound metabolism:Glutathione metabolism:Starch and sucrose metabolism:Amino sugar and nucleotide sugar metabolism:Streptomycin biosynthesis:Pyruvate metabolism:Polycyclic aromatic hydrocarbon degradation:Metabolic pathways:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:ABC transporters:Two-component system:Ribosome:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:L28:rumA:glk:TRX_reduct:Membrane Transport:Signal Transduction:Global:Metabolism:Poorly characterized:Metabolism:Carbohydrate Metabolism:Energy metabolism:Electron transport:Glycolysis/gluconeogenesis:Protein synthesis:Ribosomal proteins: synthesis and modification:tRNA and rRNA base modification:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Cellular processes and signaling:Information storage and processing:Protein synthesis:Energy metabolism:tRNA and rRNA base modification:Ribosomal proteins: synthesis and modification:Glycolysis/gluconeogenesis:Electron transport:Global:Environmental Information Processing:Genetic Information Processing:Metabolism:Metabolism:Signal Transduction:Membrane Transport:Translation:Xenobiotics Biodegradation and Metabolism:Biosynthesis of Other Secondary Metabolites:Metabolism of Other Amino Acids:Amino Acid Metabolism:Nucleotide Metabolism:Amino Acid Metabolism:Energy Metabolism:Metabolism of Other Amino Acids:Nucleotide Metabolism:Energy Metabolism:Biosynthesis of Other Secondary Metabolites:Carbohydrate Metabolism:Xenobiotics Biodegradation and Metabolism:Metabolism:Genetic Information Processing:Translation:Environmental Information Processing" 74 "Energy production and conversion:Energy production and conversion:Dihydroxyacid dehydratase/phosphogluconate dehydratase:Imidazoleglycerol-phosphate dehydratase:AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful):Methionyl-tRNA synthetase:Seryl-tRNA synthetase:Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit:Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A):Predicted acid phosphatase:S-adenosylhomocysteine hydrolase:Acetylglutamate kinase:Enoyl-[acyl-carrier-protein] reductase (NADH):Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family:Protease subunit of ATP-dependent Clp proteases:Transcription termination factor:Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis:NADH dehydrogenase, FAD-containing subunit:Predicted flavoproteins:Uncharacterized conserved protein:Amino acid transport and metabolism:Amino acid transport and metabolism:Nucleotide transport and metabolism:Nucleotide transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Fatty acid biosynthesis:Oxidative phosphorylation:Purine metabolism:Pyrimidine metabolism:Cysteine and methionine metabolism:Valine leucine and isoleucine biosynthesis:Lysine biosynthesis:Arginine and proline metabolism:Histidine metabolism:Selenocompound metabolism:One carbon pool by folate:Nicotinate and nicotinamide metabolism:Pantothenate and CoA biosynthesis:Terpenoid backbone biosynthesis:Aminoacyl-tRNA biosynthesis:Metabolic pathways:Biosynthesis of secondary metabolites:General function prediction only:General function prediction only:Function unknown:Function unknown:efp:surE:ilvD:TIGR00275:purH:metG:serS:clpP:ispG_gcpE:argB:ahcY:gyrB:nusB:Intracellular trafficking, secretion, and vesicular transport:Intracellular trafficking, secretion, and vesicular transport:Amino acid biosynthesis:Global:Metabolism:Unknown function:Cellular processes:Energy metabolism:Amino acids and amines:Purines, pyrimidines, nucleosides, and nucleotides:Purine ribonucleotide biosynthesis:DNA metabolism:DNA replication, recombination, and repair:Transcription:Transcription factors:Protein synthesis:tRNA aminoacylation:Translation factors:Protein fate:Degradation of proteins, peptides, and glycopeptides:Cellular processes:Adaptations to atypical conditions:Unknown function:Enzymes of unknown specificity:Amino acid biosynthesis:Glutamate family:Pyruvate family:Biosynthesis of cofactors, prosthetic groups, and carriers:Other:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Protein fate:Protein synthesis:Transcription:DNA metabolism:Purines, pyrimidines, nucleosides, and nucleotides:Energy metabolism:Other:Pyruvate family:Glutamate family:Enzymes of unknown specificity:Adaptations to atypical conditions:Energy Metabolism:Degradation of proteins, peptides, and glycopeptides:Translation factors:tRNA aminoacylation:Transcription factors:DNA replication, recombination, and repair:Purine ribonucleotide biosynthesis:Amino acids and amines:Global:Genetic Information Processing:Metabolism:Metabolism:Translation:Metabolism of Terpenoids and Polyketides:Metabolism of Cofactors and Vitamins:Metabolism of Other Amino Acids:Amino Acid Metabolism:Nucleotide Metabolism:Amino Acid Metabolism:Lipid Metabolism:Nucleotide Metabolism:Lipid Metabolism:Energy Metabolism:Metabolism:Poorly characterized:Metabolism of Other Amino Acids:Metabolism:Metabolism of Cofactors and Vitamins:Cellular processes and signaling:Information storage and processing:Metabolism of Terpenoids and Polyketides:Biosynthesis of cofactors, prosthetic groups, and carriers:Genetic Information Processing:Translation" 75 "GTPases - translation elongation factors:Ribosomal protein L3:Ribosomal protein L4:Ribosomal protein L23:Ribosomal protein L2:Preprotein translocase subunit SecY:Pyruvate kinase:Translation elongation factors (GTPases):Adenylate kinase and related kinases:Phage tail sheath protein FI:Phage tail tube protein FII:Uncharacterized conserved protein:Nucleotide transport and metabolism:Nucleotide transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Glycolysis / Gluconeogenesis:Purine metabolism:Pyruvate metabolism:Carbon fixation in photosynthetic organisms:Metabolic pathways:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Ribosome:Protein export:Bacterial secretion system:General function prediction only:General function prediction only:Function unknown:Function unknown:tsf:small_GTP:3a0501s007:pyruv_kin:rplB_bact:adk:tail_tube:tape_meas_TP901:L3_bact:rplD_bact:Intracellular trafficking, secretion, and vesicular transport:Intracellular trafficking, secretion, and vesicular transport:Ribosomal proteins: synthesis and modification:Translation factors:Protein fate:Protein and peptide secretion and trafficking:Mobile and extrachromosomal element functions:Prophage functions:Unknown function:General:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Global:Energy Metabolism:Nucleotide Metabolism:Translation:Folding Sorting and Degradation:Membrane Transport:Metabolism:Metabolism:Genetic Information Processing:Environmental Information Processing:Global:Glycolysis/gluconeogenesis:Nucleotide and nucleoside interconversions:Ribosomal proteins: synthesis and modification:Translation factors:Protein and peptide secretion and trafficking:Prophage functions:General:Energy metabolism:Purines, pyrimidines, nucleosides, and nucleotides:Protein synthesis:Protein fate:Mobile and extrachromosomal element functions:Unknown function:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Carbohydrate Metabolism:Energy Metabolism:Nucleotide Metabolism:Genetic Information Processing:Translation:Folding Sorting and Degradation:Environmental Information Processing:Membrane Transport:Carbohydrate Metabolism:Metabolism:Energy metabolism:Glycolysis/gluconeogenesis:Purines, pyrimidines, nucleosides, and nucleotides:Nucleotide and nucleoside interconversions:Protein synthesis" 76 "Ammonia permease:Riboflavin synthase beta-chain:Nitrogen regulatory protein PII:Phage shock protein A (IM30), suppresses sigma54-dependent transcription:Amino acid transport and metabolism:Amino acid transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Transcription:Transcription:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Photosynthesis:Photosynthesis - antenna proteins:Riboflavin metabolism:Metabolic pathways:Two-component system:Signal transduction mechanisms:Signal transduction mechanisms:lumazine-synth:amt:apcB:PS_II_psbZ:PS_I_psaC:PS_I_psaK:PS_I_psaI:Metabolism:Environmental Information Processing:Signal Transduction:Cellular processes and signaling:Global:Metabolism:Information storage and processing:Biosynthesis of cofactors, prosthetic groups, and carriers:Transport and binding proteins:Energy metabolism:Energy Metabolism:Energy metabolism:Photosynthesis:Transport and binding proteins:Cations and iron carrying compounds:Biosynthesis of cofactors, prosthetic groups, and carriers:Riboflavin, FMN, and FAD:Information storage and processing:Cellular processes and signaling:Metabolism:Riboflavin, FMN, and FAD:Cations and iron carrying compounds:Photosynthesis:Global:Environmental Information Processing:Metabolism:Metabolism:Signal Transduction:Energy Metabolism:Metabolism of Cofactors and Vitamins:Metabolism:Metabolism of Cofactors and Vitamins" 77 "Energy production and conversion:Energy production and conversion:Adenosylmethionine-8-amino-7-oxononanoate aminotransferase:Protein chain release factor A:Aminopeptidase N:Predicted metal-dependent hydrolase:Nucleoside-diphosphate-sugar epimerases:Putative GTPases (G3E family):Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family:ABC-type molybdate transport system, periplasmic component:Glucokinase:Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes:NADH dehydrogenase, FAD-containing subunit:Fatty-acid desaturase:ATP-utilizing enzymes of the PP-loop superfamily:dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes:Predicted carboxypeptidase:Carbon dioxide concentrating mechanism/carboxysome shell protein:Amino acid transport and metabolism:Amino acid transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Glycolysis / Gluconeogenesis:Galactose metabolism:Oxidative phosphorylation:Glutathione metabolism:Starch and sucrose metabolism:Amino sugar and nucleotide sugar metabolism:Streptomycin biosynthesis:Polyketide sugar unit biosynthesis:Biotin metabolism:Porphyrin and chlorophyll metabolism:Biosynthesis of unsaturated fatty acids:Metabolic pathways:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:ABC transporters:Secondary metabolites biosynthesis, transport and catabolism:Secondary metabolites biosynthesis, transport and catabolism:General function prediction only:General function prediction only:prfB:TIGR00043:TIGR00268:bioA:glk:rmlC:modA:gluta_reduc_2:CobW:Membrane Transport:Environmental Information Processing:Global:Metabolism:Biosynthesis of Other Secondary Metabolites:Metabolism of Terpenoids and Polyketides:Metabolism of Cofactors and Vitamins:Metabolism of Other Amino Acids:Lipid Metabolism:Energy Metabolism:Carbohydrate Metabolism:Metabolism:Poorly characterized:Metabolism:Cellular processes and signaling:Carbohydrate Metabolism:Energy metabolism:Electron transport:Glycolysis/gluconeogenesis:Protein synthesis:Other:Translation factors:Transport and binding proteins:Anions:Hypothetical proteins:Conserved:Biosynthesis of cofactors, prosthetic groups, and carriers:Biotin:Heme, porphyrin, and cobalamin:Cell envelope:Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Information storage and processing:Cell envelope:Biosynthesis of cofactors, prosthetic groups, and carriers:Hypothetical proteins:Transport and binding proteins:Protein synthesis:Energy metabolism:Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides:Heme, porphyrin, and cobalamin:Biotin:Conserved:Anions:Translation factors:Other:Glycolysis/gluconeogenesis:Electron transport:Global:Environmental Information Processing:Metabolism:Metabolism:Membrane Transport:Biosynthesis of Other Secondary Metabolites:Metabolism of Terpenoids and Polyketides:Metabolism of Cofactors and Vitamins:Metabolism of Other Amino Acids:Lipid Metabolism:Energy Metabolism" 78 "Energy production and conversion:Energy production and conversion:Cytidine deaminase:Predicted Fe-S oxidoreductases:Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily):Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit:Flavodoxins:Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes:Predicted nucleic acid-binding protein, contains PIN domain:Cobyrinic acid a,c-diamide synthase:Cobalamin biosynthesis protein CbiG:Multisubunit Na+/H+ antiporter, MnhB subunit:Nucleotide transport and metabolism:Nucleotide transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Oxidative phosphorylation:Pyrimidine metabolism:Porphyrin and chlorophyll metabolism:Metabolic pathways:General function prediction only:General function prediction only:cobB:cobJ_cbiH:flav_long:Electron transport:Nucleotide Metabolism:Metabolism of Cofactors and Vitamins:Metabolism:Metabolism:Global:Electron transport:Heme, porphyrin, and cobalamin:Energy metabolism:Biosynthesis of cofactors, prosthetic groups, and carriers:Metabolism:Poorly characterized:Metabolism:Energy Metabolism:Nucleotide Metabolism:Metabolism of Cofactors and Vitamins:Global:Metabolism:Energy metabolism:Energy Metabolism:Biosynthesis of cofactors, prosthetic groups, and carriers:Heme, porphyrin, and cobalamin:Metabolism:Poorly characterized" 79 "Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases:Peptide methionine sulfoxide reductase:ABC-type phosphate transport system, periplasmic component:3-dehydroquinate synthetase:Site-specific DNA methylase:Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase:ABC-type branched-chain amino acid transport systems, ATPase component:ABC-type branched-chain amino acid transport systems, ATPase component:Glycosyltransferase:Esterase/lipase:FOG: CheY-like receiver:HD superfamily phosphohydrolases:Recombinational DNA repair ATPase (RecF pathway):Phosphate starvation-inducible protein PhoH, predicted ATPase:Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase:DnaJ-class molecular chaperone:Uncharacterized protein conserved in bacteria:Uncharacterized conserved protein:Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain:Amino acid transport and metabolism:Amino acid transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Phenylalanine tyrosine and tryptophan biosynthesis:Porphyrin and chlorophyll metabolism:Aminoacyl-tRNA biosynthesis:Metabolic pathways:Biosynthesis of secondary metabolites:ABC transporters:Two-component system:Mismatch repair:Homologous recombination:General function prediction only:General function prediction only:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:hypB:gatA:sensory_box:msrA:dam:recf:aroB:ptsS_2:Protein synthesis:tRNA aminoacylation:Protein fate:Protein modification and repair:Transport and binding proteins:Anions:Cellular processes:Adaptations to atypical conditions:Amino acid biosynthesis:Aromatic amino acid family:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Information storage and processing:Amino acid biosynthesis:Cellular processes:Transport and binding proteins:Protein fate:Protein synthesis:DNA metabolism:Regulatory functions:Aromatic amino acid family:Adaptations to atypical conditions:Anions:Protein modification and repair:tRNA aminoacylation:DNA replication, recombination, and repair:Small molecule interactions:Global:Environmental Information Processing:Genetic Information Processing:Metabolism:Metabolism:Signal Transduction:Membrane Transport:Replication and Repair:Translation:Metabolism:Metabolism of Cofactors and Vitamins:Amino Acid Metabolism:Poorly characterized:Metabolism of Cofactors and Vitamins:Metabolism:Genetic Information Processing:Translation:Cellular processes and signaling:Replication and Repair:Environmental Information Processing:Membrane Transport:Signal Transduction:Global:Metabolism:Amino Acid Metabolism:Regulatory functions:Small molecule interactions:DNA metabolism:DNA replication, recombination, and repair" 80 "Mg-dependent DNase:Aspartate-semialdehyde dehydrogenase:Ribosomal protein S20:RecA-superfamily ATPases implicated in signal transduction:Zn-dependent hydrolases, including glyoxylases:cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases:ABC-type branched-chain amino acid transport systems, periplasmic component:Acetyl-CoA carboxylase beta subunit:FOG: CheY-like receiver:Mannose-1-phosphate guanylyltransferase:ABC-type multidrug transport system, permease component:ABC-type multidrug transport system, ATPase component:ABC-type multidrug transport system, ATPase and permease components:Predicted RNA-binding protein (contains KH domain):Amino acid transport and metabolism:Amino acid transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Replication, recombination and repair:Replication, recombination and repair:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Fructose and mannose metabolism:Fatty acid biosynthesis:Glycine serine and threonine metabolism:Cysteine and methionine metabolism:Lysine biosynthesis:Amino sugar and nucleotide sugar metabolism:Pyruvate metabolism:Propanoate metabolism:Carbon fixation pathways in prokaryotes:Metabolic pathways:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:ABC transporters:Ribosome:General function prediction only:General function prediction only:Signal transduction mechanisms:Signal transduction mechanisms:TIGR00010:S20:accD:asd_B:GMP_PMI:circ_KaiB:circ_KaiC:NtcA_cyano:Defense mechanisms:Defense mechanisms:Translation:Energy Metabolism:Environmental Information Processing:Membrane Transport:Carbohydrate Metabolism:Global:Metabolism:Metabolism:Poorly characterized:Metabolism:Cellular processes and signaling:Information storage and processing:Cell envelope:Amino acid biosynthesis:Unknown function:Carbohydrate Metabolism:Fatty acid and phospholipid metabolism:Biosynthesis:Regulatory functions:DNA interactions:Protein synthesis:Ribosomal proteins: synthesis and modification:Cellular processes:Other:Unknown function:Enzymes of unknown specificity:Amino acid biosynthesis:Aspartate family:Cell envelope:Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Cellular processes:Protein synthesis:Regulatory functions:Fatty acid and phospholipid metabolism:Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides:Aspartate family:Enzymes of unknown specificity:Other:Ribosomal proteins: synthesis and modification:DNA interactions:Biosynthesis:Global:Environmental Information Processing:Genetic Information Processing:Metabolism:Metabolism:Membrane Transport:Translation:Amino Acid Metabolism:Lipid Metabolism:Amino Acid Metabolism:Energy Metabolism:Lipid Metabolism:Genetic Information Processing" 81 "Energy production and conversion:Energy production and conversion:Transketolase:Peptidyl-tRNA hydrolase:Acyl carrier protein:3-oxoacyl-(acyl-carrier-protein) synthase:Preprotein translocase subunit SecD:RNase P protein component:NADH:ubiquinone oxidoreductase 49 kD subunit 7:NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K):NADH:ubiquinone oxidoreductase subunit 6 (chain J):BioD-like N-terminal domain of phosphotransacetylase:NADH:ubiquinone oxidoreductase subunit 1 (chain H):Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I):Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component:Outer membrane protein/protective antigen OMA87:Nucleotide transport and metabolism:Nucleotide transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Pentose phosphate pathway:Fatty acid biosynthesis:Oxidative phosphorylation:Purine metabolism:Carbon fixation in photosynthetic organisms:Metabolic pathways:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Protein export:Bacterial secretion system:Secondary metabolites biosynthesis, transport and catabolism:Secondary metabolites biosynthesis, transport and catabolism:General function prediction only:General function prediction only:rnpA:tktlase_bact:TIGR00302:ndhI:pth:acyl_carrier:2A0604s01:NuoD:fabF:Intracellular trafficking, secretion, and vesicular transport:Intracellular trafficking, secretion, and vesicular transport:Protein and peptide secretion and trafficking:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Global:Energy Metabolism:Lipid Metabolism:Nucleotide Metabolism:Folding Sorting and Degradation:Membrane Transport:Metabolism:Metabolism:Genetic Information Processing:Environmental Information Processing:Global:Electron transport:Pentose phosphate pathway:Biosynthesis:Purine ribonucleotide biosynthesis:RNA processing:Other:Protein and peptide secretion and trafficking:Energy metabolism:Fatty acid and phospholipid metabolism:Purines, pyrimidines, nucleosides, and nucleotides:Transcription:Protein synthesis:Protein fate:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Carbohydrate Metabolism:Energy Metabolism:Lipid Metabolism:Nucleotide Metabolism:Genetic Information Processing:Folding Sorting and Degradation:Environmental Information Processing:Membrane Transport:Carbohydrate Metabolism:Metabolism:Energy metabolism:Electron transport:Pentose phosphate pathway:Fatty acid and phospholipid metabolism:Biosynthesis:Purines, pyrimidines, nucleosides, and nucleotides:Purine ribonucleotide biosynthesis:Transcription:RNA processing:Protein synthesis:Other:Protein fate" 82 "Gamma-glutamyl phosphate reductase:3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes:Molecular chaperone:Phosphoenolpyruvate synthase/pyruvate phosphate dikinase:Integral membrane protein, interacts with FtsH:Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit:Bacterial nucleoid DNA-binding protein:Uncharacterized low-complexity proteins:Ribosome-associated protein Y (PSrp-1):DNA-binding HTH domain-containing proteins:Predicted membrane protein:Uncharacterized protein involved in ubiquinone biosynthesis:Amino acid transport and metabolism:Amino acid transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Arginine and proline metabolism:Pyruvate metabolism:Methane metabolism:Carbon fixation pathways in prokaryotes:Sulfur metabolism:Aminoacyl-tRNA biosynthesis:Metabolic pathways:Microbial metabolism in diverse environments:RNA degradation:General function prediction only:General function prediction only:Function unknown:Function unknown:gatC:cysH:yfiA:PEP_synth:prok_dnaK:Carbohydrate Metabolism:Global:Metabolism:Cellular processes and signaling:Information storage and processing:Central intermediary metabolism:Sulfur metabolism:Energy metabolism:Glycolysis/gluconeogenesis:Protein synthesis:tRNA aminoacylation:Translation factors:Protein fate:Protein folding and stabilization:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Protein fate:Protein synthesis:Energy metabolism:Central intermediary metabolism:Protein folding and stabilization:Translation factors:tRNA aminoacylation:Glycolysis/gluconeogenesis:Sulfur metabolism:Global:Genetic Information Processing:Metabolism:Metabolism:Folding Sorting and Degradation:Translation:Amino Acid Metabolism:Energy Metabolism:Energy Metabolism:Carbohydrate Metabolism:Metabolism:Amino Acid Metabolism:Poorly characterized:Genetic Information Processing:Translation:Metabolism:Folding Sorting and Degradation" 83 "Energy production and conversion:Energy production and conversion:Glutamate decarboxylase and related PLP-dependent proteins:Fumarase:Triosephosphate isomerase:Molybdopterin converting factor, large subunit:(acyl-carrier-protein) S-malonyltransferase:Ketopantoate hydroxymethyltransferase:ABC-type nitrate/sulfonate/bicarbonate transport system, permease component:Signal transduction histidine kinase:ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components:ADP-ribose pyrophosphatase:ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component:Arginine decarboxylase (spermidine biosynthesis):Hemolysins and related proteins containing CBS domains:Cyanate lyase:Uncharacterized protein conserved in bacteria:ATP adenylyltransferase (5',5'''-P-1,P-4-tetraphosphate phosphorylase II):Amino acid transport and metabolism:Amino acid transport and metabolism:Nucleotide transport and metabolism:Nucleotide transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Glycolysis / Gluconeogenesis:Citrate cycle (TCA cycle):Fructose and mannose metabolism:Fatty acid biosynthesis:Purine metabolism:Arginine and proline metabolism:Inositol phosphate metabolism:Carbon fixation in photosynthetic organisms:Carbon fixation pathways in prokaryotes:Pantothenate and CoA biosynthesis:Nitrogen metabolism:Metabolic pathways:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:ABC transporters:Two-component system:Sulfur relay system:General function prediction only:General function prediction only:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:fabD:panB:tim:cynS:fumC_II:ntrCD:speA:Environmental Information Processing:Membrane Transport:Signal Transduction:Global:Metabolism:Biosynthesis of cofactors, prosthetic groups, and carriers:Cellular processes:Transport and binding proteins:Central intermediary metabolism:Polyamine biosynthesis:Energy metabolism:Glycolysis/gluconeogenesis:TCA cycle:Fatty acid and phospholipid metabolism:Biosynthesis:Transport and binding proteins:Other:Cellular processes:Detoxification:Biosynthesis of cofactors, prosthetic groups, and carriers:Pantothenate and coenzyme A:Cellular processes and signaling:Metabolism:Poorly characterized:Fatty acid and phospholipid metabolism:Energy metabolism:Central intermediary metabolism:Pantothenate and coenzyme A:Detoxification:Other:Biosynthesis:TCA cycle:Glycolysis/gluconeogenesis:Polyamine biosynthesis:Global:Environmental Information Processing:Genetic Information Processing:Metabolism:Metabolism:Signal Transduction:Membrane Transport:Folding Sorting and Degradation:Metabolism of Cofactors and Vitamins:Amino Acid Metabolism:Nucleotide Metabolism:Lipid Metabolism:Energy Metabolism:Energy Metabolism:Carbohydrate Metabolism:Metabolism:Lipid Metabolism:Poorly characterized:Nucleotide Metabolism:Metabolism:Amino Acid Metabolism:Cellular processes and signaling:Metabolism of Cofactors and Vitamins:Genetic Information Processing:Folding Sorting and Degradation:Carbohydrate Metabolism" 84 "DNA primase (bacterial type):ATP-dependent Zn proteases:Glycine cleavage system H protein (lipoate-binding):Serine/threonine protein kinase:Phosphoenolpyruvate synthase/pyruvate phosphate dikinase:Predicted transcriptional regulators:Phage shock protein A (IM30), suppresses sigma54-dependent transcription:DnaJ-class molecular chaperone:Uncharacterized protein involved in ubiquinone biosynthesis:Amino acid transport and metabolism:Amino acid transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Pyruvate metabolism:Methane metabolism:Carbon fixation pathways in prokaryotes:Metabolic pathways:Microbial metabolism in diverse environments:DNA replication:General function prediction only:General function prediction only:Signal transduction mechanisms:Signal transduction mechanisms:HDIG:gcvH:FtsH_fam:dnaG:PEP_synth:Amino acids and amines:Energy Metabolism:Replication and Repair:Metabolism:Metabolism:Genetic Information Processing:Global:Amino acids and amines:Glycolysis/gluconeogenesis:DNA replication, recombination, and repair:Degradation of proteins, peptides, and glycopeptides:Energy metabolism:DNA metabolism:Protein fate:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Carbohydrate Metabolism:Energy Metabolism:Genetic Information Processing:Replication and Repair:Global:Metabolism:Energy metabolism:Carbohydrate Metabolism:Glycolysis/gluconeogenesis:DNA metabolism:DNA replication, recombination, and repair:Protein fate:Degradation of proteins, peptides, and glycopeptides:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized" 85 "Energy production and conversion:Energy production and conversion:Predicted Zn-dependent proteases and their inactivated homologs:Predicted methyltransferases:Lipoate-protein ligase B:Nucleotide-binding protein implicated in inhibition of septum formation:Acetyltransferases:Glycine/D-amino acid oxidases (deaminating):Shikimate kinase:N6-adenine-specific methylase:Predicted sugar phosphate isomerase involved in capsule formation:dTDP-D-glucose 4,6-dehydratase:ABC-type Mn/Zn transport systems, ATPase component:Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon):Transcriptional regulators:FOG: GGDEF domain:Predicted acetamidase/formamidase:Predicted signal transduction protein with a C-terminal ATPase domain:Predicted thiol oxidoreductase:Predicted dienelactone hydrolase:Cell cycle control, cell division, chromosome partitioning:Cell cycle control, cell division, chromosome partitioning:Amino acid transport and metabolism:Amino acid transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Phenylalanine tyrosine and tryptophan biosynthesis:Starch and sucrose metabolism:Amino sugar and nucleotide sugar metabolism:Lipoic acid metabolism:Metabolic pathways:Biosynthesis of secondary metabolites:Two-component system:General function prediction only:General function prediction only:Signal transduction mechanisms:Signal transduction mechanisms:TIGR00095:TIGR00096:maf:lipB:GGDEF:kpsF:CDP_4_6_dhtase:G1P_cyt_trans:Sugars:Protein synthesis:tRNA and rRNA base modification:Protein fate:Protein modification and repair:Cellular processes:Cell division:Unknown function:Enzymes of unknown specificity:Signal transduction:Other:Cell envelope:Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism of Cofactors and Vitamins:Amino Acid Metabolism:Carbohydrate Metabolism:Metabolism:Poorly characterized:Metabolism:Cellular processes and signaling:Information storage and processing:Cell envelope:Signal transduction:Unknown function:Cellular processes:Protein fate:Protein synthesis:Energy metabolism:Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides:Other:Enzymes of unknown specificity:Cell division:Protein modification and repair:tRNA and rRNA base modification:Sugars:Global:Environmental Information Processing:Metabolism:Metabolism:Signal Transduction:Metabolism of Cofactors and Vitamins:Metabolism:Amino Acid Metabolism:Global:Signal Transduction:Environmental Information Processing:Carbohydrate Metabolism:Energy metabolism" 86 "Energy production and conversion:Energy production and conversion:Polyprenyltransferase (cytochrome oxidase assembly factor):Ribosomal protein L27:Ribosomal protein L21:Universal stress protein UspA and related nucleotide-binding proteins:cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases:Heme/copper-type cytochrome/quinol oxidases, subunit 1:DNA-directed RNA polymerase specialized sigma subunit:Uncharacterized protein required for cytochrome oxidase assembly:Heme/copper-type cytochrome/quinol oxidases, subunit 2:Heme/copper-type cytochrome/quinol oxidase, subunit 3:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Oxidative phosphorylation:Photosynthesis:Porphyrin and chlorophyll metabolism:Metabolic pathways:Biosynthesis of secondary metabolites:Two-component system:Ribosome:RNA polymerase:Signal transduction mechanisms:Signal transduction mechanisms:L21:L27:cyoE_ctaB:CtaD_CoxA:sigma70-ECF:Translation:Energy Metabolism:Environmental Information Processing:Signal Transduction:Metabolism:Global:Metabolism:Metabolism:Cellular processes and signaling:Information storage and processing:Energy Metabolism:Energy metabolism:Electron transport:Protein synthesis:Ribosomal proteins: synthesis and modification:Biosynthesis of cofactors, prosthetic groups, and carriers:Heme, porphyrin, and cobalamin:Information storage and processing:Cellular processes and signaling:Metabolism:Biosynthesis of cofactors, prosthetic groups, and carriers:Protein synthesis:Energy metabolism:Heme, porphyrin, and cobalamin:Ribosomal proteins: synthesis and modification:Electron transport:Global:Environmental Information Processing:Genetic Information Processing:Metabolism:Metabolism:Signal Transduction:Translation:Transcription:Genetic Information Processing:Metabolism of Cofactors and Vitamins:Transcription:Metabolism of Cofactors and Vitamins" 87 "6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase:Fructose-2,6-bisphosphatase:Predicted phosphatases:Topoisomerase IA:Predicted phosphatase/phosphohexomutase:Glycine/D-amino acid oxidases (deaminating):ABC-type Mn/Zn transport systems, ATPase component:16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases:Dipeptidyl aminopeptidases/acylaminoacyl-peptidases:Type II secretory pathway, pullulanase PulA and related glycosidases:Uncharacterized conserved protein:Predicted nuclease of the RecB family:Uncharacterized conserved protein:Lysophospholipase:Uncharacterized protein conserved in bacteria:Uncharacterized protein conserved in cyanobacteria:Amino acid transport and metabolism:Amino acid transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Replication, recombination and repair:Replication, recombination and repair:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Pentose phosphate pathway:Thiamine metabolism:Metabolic pathways:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:General function prediction only:General function prediction only:Function unknown:Function unknown:TIGR00093:topA_bact:pgl:HAD-SF-IA-v3:HAD-SF-IA-hyp1:glgX_debranch:thiamin_ThiO:Energy metabolism:Pentose phosphate pathway:Biosynthesis and degradation of polysaccharides:DNA metabolism:DNA replication, recombination, and repair:Protein synthesis:tRNA and rRNA base modification:Unknown function:Enzymes of unknown specificity:Biosynthesis of cofactors, prosthetic groups, and carriers:Thiamine:Information storage and processing:Metabolism:Poorly characterized:Carbohydrate Metabolism:Metabolism:Global:Metabolism of Cofactors and Vitamins:Carbohydrate Metabolism:Metabolism:Poorly characterized:Metabolism:Information storage and processing:Biosynthesis of cofactors, prosthetic groups, and carriers:Unknown function:Protein synthesis:DNA metabolism:Energy metabolism:Thiamine:Enzymes of unknown specificity:tRNA and rRNA base modification:DNA replication, recombination, and repair:Biosynthesis and degradation of polysaccharides:Pentose phosphate pathway:Global:Metabolism:Metabolism:Metabolism of Cofactors and Vitamins" 88 "Energy production and conversion:Energy production and conversion:3-isopropylmalate dehydratase small subunit:Nuclease subunit of the excinuclease complex:Molecular chaperone:Signal transduction histidine kinase:Membrane carboxypeptidase (penicillin-binding protein):Predicted integral membrane protein:Predicted phosphohydrolases:Fe-S oxidoreductase, related to NifB/MoaA family:ATP:corrinoid adenosyltransferase:Methylase involved in ubiquinone/menaquinone biosynthesis:Uncharacterized protein conserved in bacteria:Signal transduction histidine kinase:Heme oxygenase:Amino acid transport and metabolism:Amino acid transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Replication, recombination and repair:Replication, recombination and repair:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Valine leucine and isoleucine biosynthesis:C5-Branched dibasic acid metabolism:Porphyrin and chlorophyll metabolism:Metabolic pathways:Biosynthesis of secondary metabolites:RNA degradation:Nucleotide excision repair:General function prediction only:General function prediction only:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:leuD:uvrC:sensory_box:rimI:PBP_1a_fam:prok_dnaK:cyano_FeS_chp:Cellular processes and signaling:Metabolism:Poorly characterized:DNA metabolism:Amino Acid Metabolism:Metabolism of Cofactors and Vitamins:Folding Sorting and Degradation:Replication and Repair:Metabolism:Metabolism:Genetic Information Processing:Global:Small molecule interactions:DNA replication, recombination, and repair:Ribosomal proteins: synthesis and modification:Protein folding and stabilization:Pyruvate family:Biosynthesis and degradation of murein sacculus and peptidoglycan:Regulatory functions:DNA metabolism:Protein synthesis:Protein fate:Amino acid biosynthesis:Cell envelope:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Carbohydrate Metabolism:Amino Acid Metabolism:Metabolism of Cofactors and Vitamins:Genetic Information Processing:Folding Sorting and Degradation:Replication and Repair:Global:Metabolism:Regulatory functions:Small molecule interactions:Carbohydrate Metabolism:DNA replication, recombination, and repair:Protein synthesis:Ribosomal proteins: synthesis and modification:Protein fate:Protein folding and stabilization:Amino acid biosynthesis:Pyruvate family:Cell envelope:Biosynthesis and degradation of murein sacculus and peptidoglycan:Information storage and processing" 89 "Energy production and conversion:Energy production and conversion:Transaldolase:DNA-directed RNA polymerase specialized sigma subunit:Uncharacterized conserved protein, contains double-stranded beta-helix domain:Nitrogenase molybdenum-iron protein, alpha and beta chains:Predicted dienelactone hydrolase:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Transcription:Transcription:Pentose phosphate pathway:Porphyrin and chlorophyll metabolism:Metabolic pathways:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:RNA polymerase:General function prediction only:General function prediction only:Function unknown:Function unknown:talAB:DPOR_BchB:sigma70-ECF:Genetic Information Processing:Transcription:Metabolism:Global:Metabolism:Poorly characterized:Metabolism:Information storage and processing:Carbohydrate Metabolism:Energy metabolism:Pentose phosphate pathway:Biosynthesis of cofactors, prosthetic groups, and carriers:Chlorophyll and bacteriochlorphyll:Information storage and processing:Metabolism:Poorly characterized:Biosynthesis of cofactors, prosthetic groups, and carriers:Energy metabolism:Chlorophyll and bacteriochlorphyll:Pentose phosphate pathway:Global:Genetic Information Processing:Metabolism:Metabolism:Transcription:Metabolism of Cofactors and Vitamins:Metabolism of Cofactors and Vitamins:Carbohydrate Metabolism" 90 "Energy production and conversion:Energy production and conversion:FAD/FMN-containing dehydrogenases:Molecular chaperone:Anthranilate/para-aminobenzoate synthases component II:Molecular chaperone GrpE (heat shock protein):3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase:UDP-N-acetylmuramyl pentapeptide synthase:DNA-binding ferritin-like protein (oxidative damage protectant):Predicted permeases:Biopolymer transport proteins:Diacylglycerol kinase:ABC-type Fe3+ transport system, permease component:Peroxiredoxin:ResB protein required for cytochrome c biosynthesis:Restriction endonuclease:Arabinose efflux permease:Predicted GTPase:ABC-type uncharacterized transport system, permease component:ABC-type spermidine/putrescine transport systems, ATPase components:Predicted sensor protein/domain:Integral membrane protein (PIN domain superfamily):Amino acid transport and metabolism:Amino acid transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Lysine biosynthesis:Phenylalanine tyrosine and tryptophan biosynthesis:Peptidoglycan biosynthesis:Glycerolipid metabolism:Glycerophospholipid metabolism:Glyoxylate and dicarboxylate metabolism:Porphyrin and chlorophyll metabolism:Metabolic pathways:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:ABC transporters:RNA degradation:General function prediction only:General function prediction only:Signal transduction mechanisms:Signal transduction mechanisms:aroFGH:small_GTP:trpG_papA:murF:AcsF:prok_dnaK:Intracellular trafficking, secretion, and vesicular transport:Intracellular trafficking, secretion, and vesicular transport:Defense mechanisms:Defense mechanisms:Unknown function:Lipid Metabolism:Amino Acid Metabolism:Glycan Biosynthesis and Metabolism:Metabolism of Cofactors and Vitamins:Folding Sorting and Degradation:Membrane Transport:Metabolism:Metabolism:Genetic Information Processing:Environmental Information Processing:Global:Protein folding and stabilization:General:Aromatic amino acid family:Chlorophyll and bacteriochlorphyll:Biosynthesis and degradation of murein sacculus and peptidoglycan:Protein fate:Unknown function:Amino acid biosynthesis:Biosynthesis of cofactors, prosthetic groups, and carriers:Cell envelope:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Carbohydrate Metabolism:Lipid Metabolism:Amino Acid Metabolism:Glycan Biosynthesis and Metabolism:Metabolism of Cofactors and Vitamins:Genetic Information Processing:Folding Sorting and Degradation:Environmental Information Processing:Membrane Transport:Global:Metabolism:Protein fate:Protein folding and stabilization:Carbohydrate Metabolism:General:Amino acid biosynthesis:Aromatic amino acid family:Biosynthesis of cofactors, prosthetic groups, and carriers:Chlorophyll and bacteriochlorphyll:Cell envelope:Biosynthesis and degradation of murein sacculus and peptidoglycan:Cellular processes and signaling:Metabolism:Poorly characterized" 91 "Energy production and conversion:Energy production and conversion:NAD synthase:Ca2+/H+ antiporter:Predicted permease:ABC-type dipeptide transport system, periplasmic component:Phosphomannomutase:ABC-type dipeptide/oligopeptide/nickel transport systems, permease components:Monoamine oxidase:Uncharacterized conserved protein:Uncharacterized low-complexity proteins:FOG: HEAT repeat:Glycosyl transferases, related to UDP-glucuronosyltransferase:Lysophospholipase L1 and related esterases:Arabinose efflux permease:Uncharacterized conserved protein:Amino acid transport and metabolism:Amino acid transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Photosynthesis - antenna proteins:Amino sugar and nucleotide sugar metabolism:Nicotinate and nicotinamide metabolism:Nitrogen metabolism:Metabolic pathways:ABC transporters:General function prediction only:General function prediction only:Function unknown:Function unknown:cax:nadE:glmM:Transport and binding proteins:Energy Metabolism:Metabolism of Cofactors and Vitamins:Membrane Transport:Metabolism:Metabolism:Environmental Information Processing:Global:Amino sugars:Cations and iron carrying compounds:Pyridine nucleotides:Central intermediary metabolism:Transport and binding proteins:Biosynthesis of cofactors, prosthetic groups, and carriers:Metabolism:Poorly characterized:Metabolism:Carbohydrate Metabolism:Energy Metabolism:Metabolism of Cofactors and Vitamins:Environmental Information Processing:Membrane Transport:Global:Metabolism:Central intermediary metabolism:Amino sugars:Carbohydrate Metabolism:Cations and iron carrying compounds:Biosynthesis of cofactors, prosthetic groups, and carriers:Pyridine nucleotides:Metabolism:Poorly characterized" 92 "Energy production and conversion:Energy production and conversion:NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K):Cytochrome bd-type quinol oxidase, subunit 1:Cytochrome bd-type quinol oxidase, subunit 2:ADP-ribosylglycohydrolase:FOG: HEAT repeat:Cyanate lyase:S-adenosylmethionine decarboxylase:Phage shock protein A (IM30), suppresses sigma54-dependent transcription:Hydrogenase/urease accessory protein:ABC-type sulfate transport system, permease component:Ribulose bisphosphate carboxylase small subunit:Amino acid transport and metabolism:Amino acid transport and metabolism:Transcription:Transcription:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Oxidative phosphorylation:Photosynthesis:Cysteine and methionine metabolism:Arginine and proline metabolism:Glyoxylate and dicarboxylate metabolism:Carbon fixation in photosynthetic organisms:Nitrogen metabolism:Metabolic pathways:Microbial metabolism in diverse environments:ABC transporters:Signal transduction mechanisms:Signal transduction mechanisms:cydB:cynS:3a0106s02:PS_II_psbM:PS_I_psaK:SAM_DCase_Bsu:Carbohydrate Metabolism:Global:Metabolism:Information storage and processing:Central intermediary metabolism:Polyamine biosynthesis:Energy metabolism:Electron transport:Photosynthesis:Transport and binding proteins:Anions:Cellular processes:Detoxification:Information storage and processing:Cellular processes and signaling:Metabolism:Cellular processes:Transport and binding proteins:Energy metabolism:Central intermediary metabolism:Detoxification:Anions:Photosynthesis:Electron transport:Polyamine biosynthesis:Global:Environmental Information Processing:Metabolism:Metabolism:Membrane Transport:Amino Acid Metabolism:Energy Metabolism:Energy Metabolism:Carbohydrate Metabolism:Metabolism:Amino Acid Metabolism:Metabolism:Cellular processes and signaling:Environmental Information Processing:Membrane Transport" 93 "Energy production and conversion:Energy production and conversion:Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit:Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase:5-enolpyruvylshikimate-3-phosphate synthase:Indole-3-glycerol phosphate synthase:Tyrosyl-tRNA synthetase:Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family:Orotidine-5'-phosphate decarboxylase:Preprotein translocase subunit SecF:Fructose-2,6-bisphosphatase:Dihydroxynaphthoic acid synthase:Carbamoylphosphate synthase large subunit (split gene in MJ):Glycosyltransferases involved in cell wall biogenesis:Predicted phosphatases:Pyridoxal phosphate biosynthesis protein:Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes:4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family:Acetyl/propionyl-CoA carboxylase, alpha subunit:Amino acid transport and metabolism:Amino acid transport and metabolism:Nucleotide transport and metabolism:Nucleotide transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Glycolysis / Gluconeogenesis:Citrate cycle (TCA cycle):Fatty acid biosynthesis:Ubiquinone and other terpenoid-quinone biosynthesis:Pyrimidine metabolism:Alanine aspartate and glutamate metabolism:Glycine serine and threonine metabolism:Cysteine and methionine metabolism:Valine leucine and isoleucine degradation:Valine leucine and isoleucine biosynthesis:Histidine metabolism:Tyrosine metabolism:Phenylalanine metabolism:Phenylalanine tyrosine and tryptophan biosynthesis:Novobiocin biosynthesis:Pyruvate metabolism:Propanoate metabolism:Butanoate metabolism:Methane metabolism:Carbon fixation pathways in prokaryotes:Vitamin B6 metabolism:Aminoacyl-tRNA biosynthesis:Metabolic pathways:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Protein export:Bacterial secretion system:General function prediction only:General function prediction only:tyrS:salvage_mtnA:accC:pdxJ:2A0604s01:lipoamide_DH:aroA:CPSaseII_lrg:HAD-SF-IA-v3:pyrF:menB:Intracellular trafficking, secretion, and vesicular transport:Intracellular trafficking, secretion, and vesicular transport:Translation:Poorly characterized:Folding Sorting and Degradation:Metabolism:Environmental Information Processing:Membrane Transport:Cellular processes and signaling:Global:Metabolism:Information storage and processing:Biosynthesis of cofactors, prosthetic groups, and carriers:Amino acid biosynthesis:Unknown function:Protein fate:Carbohydrate Metabolism:Fatty acid and phospholipid metabolism:Biosynthesis:Purines, pyrimidines, nucleosides, and nucleotides:Pyrimidine ribonucleotide biosynthesis:Protein synthesis:tRNA aminoacylation:Protein fate:Protein and peptide secretion and trafficking:Unknown function:Enzymes of unknown specificity:Amino acid biosynthesis:Aromatic amino acid family:Aspartate family:Biosynthesis of cofactors, prosthetic groups, and carriers:Menaquinone and ubiquinone:Pyridoxine:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Protein synthesis:Purines, pyrimidines, nucleosides, and nucleotides:Fatty acid and phospholipid metabolism:Pyridoxine:Menaquinone and ubiquinone:Aspartate family:Aromatic amino acid family:Enzymes of unknown specificity:Protein and peptide secretion and trafficking:tRNA aminoacylation:Pyrimidine ribonucleotide biosynthesis:Biosynthesis:Global:Environmental Information Processing:Genetic Information Processing:Metabolism:Metabolism:Membrane Transport:Folding Sorting and Degradation:Translation:Biosynthesis of Other Secondary Metabolites:Metabolism of Cofactors and Vitamins:Amino Acid Metabolism:Nucleotide Metabolism:Lipid Metabolism:Amino Acid Metabolism:Energy Metabolism:Nucleotide Metabolism:Lipid Metabolism:Metabolism of Cofactors and Vitamins:Energy Metabolism:Carbohydrate Metabolism:Biosynthesis of Other Secondary Metabolites:Metabolism:Genetic Information Processing" 94 "Gamma-glutamyl phosphate reductase:Acetyltransferase (isoleucine patch superfamily):Nitrogen regulatory protein PII:Universal stress protein UspA and related nucleotide-binding proteins:Chemotaxis protein histidine kinase and related kinases:Bacterial cell division membrane protein:Bacterial nucleoid DNA-binding protein:Predicted GTPases:Transglutaminase-like enzymes, putative cysteine proteases:Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains:Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor):Cation transport ATPase:Cell cycle control, cell division, chromosome partitioning:Cell cycle control, cell division, chromosome partitioning:Amino acid transport and metabolism:Amino acid transport and metabolism:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Cell motility:Cell motility:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Photosynthesis:Arginine and proline metabolism:Metabolic pathways:Two-component system:General function prediction only:General function prediction only:Signal transduction mechanisms:Signal transduction mechanisms:TIGR00244:ant_ant_sig:ATPase-IB1_Cu:GTPase_YlqF:Other:Amino Acid Metabolism:Signal Transduction:Metabolism:Metabolism:Environmental Information Processing:Global:DNA interactions:Protein interactions:Other:Cations and iron carrying compounds:Regulatory functions:Protein synthesis:Transport and binding proteins:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Energy Metabolism:Amino Acid Metabolism:Environmental Information Processing:Signal Transduction:Global:Metabolism:Regulatory functions:DNA interactions:Protein interactions:Protein synthesis:Energy Metabolism:Transport and binding proteins:Cations and iron carrying compounds:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized" 95 "Acetyltransferase (isoleucine patch superfamily):Sulfite reductase, beta subunit (hemoprotein):ABC-type phosphate transport system, periplasmic component:6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase:Peroxiredoxin:Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain:Type I site-specific restriction-modification system, R (restriction) subunit and related helicases:Signal transduction histidine kinase:Periplasmic protease:Uncharacterized protein conserved in bacteria:Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases:Predicted nuclease of the RecB family:Low specificity phosphatase (HAD superfamily):Uncharacterized protein conserved in bacteria:3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase:Tfp pilus assembly protein PilF:Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Replication, recombination and repair:Replication, recombination and repair:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Cell motility:Cell motility:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Pentose phosphate pathway:Selenocompound metabolism:Lipopolysaccharide biosynthesis:Sulfur metabolism:Metabolic pathways:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:ABC transporters:Two-component system:Sulfur relay system:General function prediction only:General function prediction only:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:prc:trmU:pgl:KDO8P_synth:HAD-SF-IIIA:sir:ptsS_2:TIGR03032:PS_II_psbQ_bact:Intracellular trafficking, secretion, and vesicular transport:Intracellular trafficking, secretion, and vesicular transport:Defense mechanisms:Defense mechanisms:Cell envelope:Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Energy metabolism:Energy Metabolism:Metabolism of Other Amino Acids:Glycan Biosynthesis and Metabolism:Folding Sorting and Degradation:Membrane Transport:Signal Transduction:Metabolism:Metabolism:Genetic Information Processing:Environmental Information Processing:Global:Sulfur metabolism:Pentose phosphate pathway:Photosynthesis:tRNA and rRNA base modification:Protein modification and repair:Anions:Conserved:Enzymes of unknown specificity:Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides:Central intermediary metabolism:Energy metabolism:Protein synthesis:Protein fate:Transport and binding proteins:Hypothetical proteins:Unknown function:Cell envelope:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Carbohydrate Metabolism:Energy Metabolism:Metabolism of Other Amino Acids:Glycan Biosynthesis and Metabolism:Genetic Information Processing:Folding Sorting and Degradation:Environmental Information Processing:Membrane Transport:Signal Transduction:Global:Metabolism:Central intermediary metabolism:Sulfur metabolism:Carbohydrate Metabolism:Pentose phosphate pathway:Photosynthesis:Protein synthesis:tRNA and rRNA base modification:Protein fate:Protein modification and repair:Transport and binding proteins:Anions:Hypothetical proteins:Conserved:Unknown function:Enzymes of unknown specificity" 96 "6-phosphogluconate dehydrogenase:DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32):Signal transduction histidine kinase:Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain:Predicted membrane protein:Tfp pilus assembly protein, pilus retraction ATPase PilT:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Transcription:Transcription:Cell motility:Cell motility:Pentose phosphate pathway:Glutathione metabolism:Metabolic pathways:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Two-component system:RNA polymerase:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:gnd:pilT_fam:sigma70-ECF:Intracellular trafficking, secretion, and vesicular transport:Intracellular trafficking, secretion, and vesicular transport:Cellular processes:Chemotaxis and motility:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Environmental Information Processing:Metabolism of Other Amino Acids:Transcription:Signal Transduction:Metabolism:Metabolism:Genetic Information Processing:Environmental Information Processing:Global:Pentose phosphate pathway:Chemotaxis and motility:Energy metabolism:Cellular processes:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Carbohydrate Metabolism:Metabolism of Other Amino Acids:Genetic Information Processing:Transcription:Carbohydrate Metabolism:Signal Transduction:Global:Metabolism:Energy metabolism:Pentose phosphate pathway" 97 "Energy production and conversion:Energy production and conversion:Citrate synthase:Glycosyltransferases involved in cell wall biogenesis:SAM-dependent methyltransferases:Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes:Biotin carboxyl carrier protein:Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily:DNA polymerase I - 3'-5' exonuclease and polymerase domains:ABC-type multidrug transport system, ATPase and permease components:Fructose-1,6-bisphosphatase/sedoheptulose 1,7-bisphosphatase and related proteins:4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family:Carbon dioxide concentrating mechanism/carboxysome shell protein:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Replication, recombination and repair:Replication, recombination and repair:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Glycolysis / Gluconeogenesis:Citrate cycle (TCA cycle):Pentose phosphate pathway:Fructose and mannose metabolism:Fatty acid biosynthesis:Purine metabolism:Pyrimidine metabolism:Pyruvate metabolism:Glyoxylate and dicarboxylate metabolism:Propanoate metabolism:Carbon fixation in photosynthetic organisms:Metabolic pathways:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:DNA replication:Base excision repair:Nucleotide excision repair:Homologous recombination:Secondary metabolites biosynthesis, transport and catabolism:Secondary metabolites biosynthesis, transport and catabolism:General function prediction only:General function prediction only:glpX:BCCP:pola:cit_synth_II:Defense mechanisms:Defense mechanisms:Energy metabolism:Pentose phosphate pathway:Fatty acid and phospholipid metabolism:Biosynthesis:DNA metabolism:DNA replication, recombination, and repair:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:DNA metabolism:Fatty acid and phospholipid metabolism:Energy metabolism:DNA replication, recombination, and repair:Biosynthesis:Pentose phosphate pathway:Global:Genetic Information Processing:Metabolism:Metabolism:Replication and Repair:Nucleotide Metabolism:Lipid Metabolism:Carbohydrate Metabolism:Energy Metabolism:Energy Metabolism:Metabolism:Lipid Metabolism:Poorly characterized:Nucleotide Metabolism:Metabolism:Cellular processes and signaling:Genetic Information Processing:Replication and Repair:Global:Metabolism:Information storage and processing:Carbohydrate Metabolism" 98 "Energy production and conversion:Energy production and conversion:Imidazoleglycerol-phosphate dehydratase:Tryptophan synthase beta chain:Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit:Peptide methionine sulfoxide reductase:Sulfite reductase, alpha subunit (flavoprotein):Quinolinate synthase:Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family:2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases:Predicted Fe-S-cluster oxidoreductase:Predicted membrane-associated Zn-dependent proteases 1:Predicted Fe-S-cluster redox enzyme:Aconitase B:Amino acid transport and metabolism:Amino acid transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Replication, recombination and repair:Replication, recombination and repair:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Citrate cycle (TCA cycle):Ubiquinone and other terpenoid-quinone biosynthesis:Photosynthesis:Glycine serine and threonine metabolism:Histidine metabolism:Phenylalanine tyrosine and tryptophan biosynthesis:Glyoxylate and dicarboxylate metabolism:Carbon fixation pathways in prokaryotes:Nicotinate and nicotinamide metabolism:Metabolic pathways:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:General function prediction only:General function prediction only:TIGR00048:TIGR00054:acnB:trpB:msrA:nadA:gyrA:Ubi-OHases:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:TCA cycle:Energy Metabolism:Amino Acid Metabolism:Metabolism of Cofactors and Vitamins:Metabolism:Metabolism:Global:TCA cycle:DNA replication, recombination, and repair:tRNA and rRNA base modification:Degradation of proteins, peptides, and glycopeptides:Adaptations to atypical conditions:Aromatic amino acid family:Menaquinone and ubiquinone:Pyridine nucleotides:Energy metabolism:DNA metabolism:Protein synthesis:Protein fate:Cellular processes:Amino acid biosynthesis:Biosynthesis of cofactors, prosthetic groups, and carriers:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Carbohydrate Metabolism:Energy Metabolism:Amino Acid Metabolism:Metabolism of Cofactors and Vitamins:Global:Metabolism:Energy metabolism:Carbohydrate Metabolism:DNA metabolism:DNA replication, recombination, and repair:Protein synthesis:tRNA and rRNA base modification:Protein fate:Degradation of proteins, peptides, and glycopeptides:Cellular processes:Adaptations to atypical conditions:Amino acid biosynthesis:Aromatic amino acid family:Biosynthesis of cofactors, prosthetic groups, and carriers:Menaquinone and ubiquinone:Pyridine nucleotides" 99 "Glutamyl- and glutaminyl-tRNA synthetases:Superfamily I DNA and RNA helicases:Predicted S-adenosylmethionine-dependent methyltransferase:Nicotinic acid phosphoribosyltransferase:Membrane-bound lytic murein transglycosylase:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Replication, recombination and repair:Replication, recombination and repair:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Nucleotide excision repair:Mismatch repair:General function prediction only:General function prediction only:TIGR00091:queuosine_YadB:Protein synthesis:tRNA and rRNA base modification:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Replication and Repair:Replication and Repair:Genetic Information Processing:Poorly characterized:Metabolism:Cellular processes and signaling:Information storage and processing:Protein synthesis:tRNA and rRNA base modification:Genetic Information Processing" 100 "Glutamate-1-semialdehyde aminotransferase:3-isopropylmalate dehydratase large subunit:Delta-aminolevulinic acid dehydratase:Coproporphyrinogen III oxidase:Membrane GTPase LepA:Chemotaxis protein histidine kinase and related kinases:cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases:Predicted permeases:Phosphoglyceromutase:FOG: CheY-like receiver:Chemotaxis signal transduction protein:Methyl-accepting chemotaxis protein:16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases:Predicted membrane GTPase involved in stress response:Amino acid transport and metabolism:Amino acid transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Cell motility:Cell motility:Glycolysis / Gluconeogenesis:Valine leucine and isoleucine biosynthesis:C5-Branched dibasic acid metabolism:Methane metabolism:Porphyrin and chlorophyll metabolism:Metabolic pathways:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Two-component system:General function prediction only:General function prediction only:Signal transduction mechanisms:Signal transduction mechanisms:TIGR00093:leuC:small_GTP:hemL:pgm_bpd_ind:Metabolism:Poorly characterized:Protein synthesis:Energy Metabolism:Amino Acid Metabolism:Metabolism of Cofactors and Vitamins:Signal Transduction:Metabolism:Metabolism:Environmental Information Processing:Global:Glycolysis/gluconeogenesis:tRNA and rRNA base modification:General:Pyruvate family:Heme, porphyrin, and cobalamin:Energy metabolism:Protein synthesis:Unknown function:Amino acid biosynthesis:Biosynthesis of cofactors, prosthetic groups, and carriers:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Carbohydrate Metabolism:Energy Metabolism:Amino Acid Metabolism:Metabolism of Cofactors and Vitamins:Environmental Information Processing:Signal Transduction:Global:Metabolism:Energy metabolism:Glycolysis/gluconeogenesis:Carbohydrate Metabolism:tRNA and rRNA base modification:Unknown function:General:Amino acid biosynthesis:Pyruvate family:Biosynthesis of cofactors, prosthetic groups, and carriers:Heme, porphyrin, and cobalamin:Information storage and processing:Cellular processes and signaling" 101 "Energy production and conversion:Energy production and conversion:DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32):Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain:K+-transporting ATPase, A chain:Thermophilic glucose-6-phosphate isomerase and related metalloenzymes:High-affinity K+ transport system, ATPase chain B:Peptidylarginine deiminase and related enzymes:Cytochrome c:ATP-dependent nuclease, subunit B:Amino acid transport and metabolism:Amino acid transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Glyoxylate and dicarboxylate metabolism:Metabolic pathways:Two-component system:RNA polymerase:General function prediction only:General function prediction only:Signal transduction mechanisms:Signal transduction mechanisms:kdpA:ATPase_P-type:TIGR02652:sigma70-ECF:bicupin_oxalic:Global:Metabolism:Signal Transduction:Environmental Information Processing:Transcription:Genetic Information Processing:Carbohydrate Metabolism:Carbohydrate Metabolism:Transport and binding proteins:Cations and iron carrying compounds:Hypothetical proteins:Conserved:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Poorly characterized:Metabolism:Cellular processes and signaling:Information storage and processing:Hypothetical proteins:Transport and binding proteins:Conserved:Cations and iron carrying compounds:Global:Environmental Information Processing:Genetic Information Processing:Metabolism:Metabolism:Signal Transduction:Transcription" 102 "5-formyltetrahydrofolate cyclo-ligase:Molybdopterin converting factor, large subunit:Ketopantoate hydroxymethyltransferase:Signal transduction histidine kinase:Predicted dehydrogenases and related proteins:Membrane carboxypeptidase (penicillin-binding protein):ADP-ribose pyrophosphatase:GDP-D-mannose dehydratase:Methylase involved in ubiquinone/menaquinone biosynthesis:Precorrin-2 methylase:Uncharacterized conserved protein:Uncharacterized protein conserved in bacteria:Uncharacterized conserved protein:Uncharacterized protein conserved in bacteria:Nucleotide transport and metabolism:Nucleotide transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Fructose and mannose metabolism:Amino sugar and nucleotide sugar metabolism:Peptidoglycan biosynthesis:One carbon pool by folate:Pantothenate and CoA biosynthesis:Porphyrin and chlorophyll metabolism:Metabolic pathways:Biosynthesis of secondary metabolites:Two-component system:Sulfur relay system:General function prediction only:General function prediction only:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:panB:cobI_cbiL:gmd:MTHFS_bact:Central intermediary metabolism:Glycan Biosynthesis and Metabolism:Metabolism of Cofactors and Vitamins:Folding Sorting and Degradation:Signal Transduction:Metabolism:Metabolism:Genetic Information Processing:Environmental Information Processing:Global:One-carbon metabolism:Heme, porphyrin, and cobalamin:Pantothenate and coenzyme A:Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides:Central intermediary metabolism:Biosynthesis of cofactors, prosthetic groups, and carriers:Cell envelope:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Carbohydrate Metabolism:Glycan Biosynthesis and Metabolism:Metabolism of Cofactors and Vitamins:Genetic Information Processing:Folding Sorting and Degradation:Environmental Information Processing:Signal Transduction:Global:Metabolism:Carbohydrate Metabolism:One-carbon metabolism:Biosynthesis of cofactors, prosthetic groups, and carriers:Heme, porphyrin, and cobalamin:Pantothenate and coenzyme A:Cell envelope:Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides:Cellular processes and signaling:Metabolism:Poorly characterized" 103 "Energy production and conversion:Energy production and conversion:Polyprenyltransferase (cytochrome oxidase assembly factor):Catalase (peroxidase I):Bacterial cell division membrane protein:Heme/copper-type cytochrome/quinol oxidases, subunit 1:NADH:ubiquinone oxidoreductase subunit 4 (chain M):Type II secretory pathway, component PulF:Uncharacterized protein required for cytochrome oxidase assembly:Heme/copper-type cytochrome/quinol oxidases, subunit 2:Heme/copper-type cytochrome/quinol oxidase, subunit 3:Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB:Tfp pilus assembly protein, pilus retraction ATPase PilT:Cell cycle control, cell division, chromosome partitioning:Cell cycle control, cell division, chromosome partitioning:Cell motility:Cell motility:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Oxidative phosphorylation:Phenylalanine metabolism:Tryptophan metabolism:Methane metabolism:Porphyrin and chlorophyll metabolism:Metabolic pathways:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Two-component system:cat_per_HPI:pilT_fam:cyoE_ctaB:NDH_I_M:CtaD_CoxA:Intracellular trafficking, secretion, and vesicular transport:Intracellular trafficking, secretion, and vesicular transport:Global:Amino Acid Metabolism:Metabolism of Cofactors and Vitamins:Signal Transduction:Metabolism:Metabolism:Environmental Information Processing:Global:Electron transport:Detoxification:Chemotaxis and motility:Heme, porphyrin, and cobalamin:Energy metabolism:Cellular processes:Biosynthesis of cofactors, prosthetic groups, and carriers:Cellular processes and signaling:Metabolism:Metabolism:Energy Metabolism:Amino Acid Metabolism:Metabolism of Cofactors and Vitamins:Environmental Information Processing:Signal Transduction:Energy Metabolism:Metabolism:Energy metabolism:Electron transport:Cellular processes:Detoxification:Chemotaxis and motility:Biosynthesis of cofactors, prosthetic groups, and carriers:Heme, porphyrin, and cobalamin:Cellular processes and signaling:Metabolism" 104 "Energy production and conversion:Energy production and conversion:Glutamine phosphoribosylpyrophosphate amidotransferase:Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain:3-isopropylmalate dehydratase large subunit:2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase:Fe-S oxidoreductase:FAD/FMN-containing dehydrogenases:Predicted membrane protein:4-hydroxybenzoate polyprenyltransferase and related prenyltransferases:Predicted TIM-barrel enzyme:2-methylthioadenine synthetase:ABC-type amino acid transport/signal transduction systems, periplasmic component/domain:BioD-like N-terminal domain of phosphotransacetylase:ABC-type multidrug transport system, ATPase and permease components:Mg-chelatase subunit ChlI:Uncharacterized conserved protein:ABC-type amino acid transport system, permease component:Amino acid transport and metabolism:Amino acid transport and metabolism:Nucleotide transport and metabolism:Nucleotide transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Citrate cycle (TCA cycle):Ubiquinone and other terpenoid-quinone biosynthesis:Oxidative phosphorylation:Purine metabolism:Alanine aspartate and glutamate metabolism:Valine leucine and isoleucine biosynthesis:Glycerolipid metabolism:Glycerophospholipid metabolism:Toluene degradation:Glyoxylate and dicarboxylate metabolism:Butanoate metabolism:C5-Branched dibasic acid metabolism:Carbon fixation pathways in prokaryotes:Porphyrin and chlorophyll metabolism:Terpenoid backbone biosynthesis:Metabolic pathways:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:ABC transporters:General function prediction only:General function prediction only:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:TIGR00023:TIGR00089:ispF:leuC:thylakoid_BtpA:purF:ubiA_proteo:chlor_syn_BchG:HEQRo_perm_3TM:FGAM_synth_II:BchI-ChlI:Defense mechanisms:Defense mechanisms:Global:Metabolism:Biosynthesis of cofactors, prosthetic groups, and carriers:Amino acid biosynthesis:Transport and binding proteins:Fatty acid and phospholipid metabolism:Biosynthesis:Purines, pyrimidines, nucleosides, and nucleotides:Purine ribonucleotide biosynthesis:Protein fate:Protein folding and stabilization:Transport and binding proteins:Amino acids, peptides and amines:Amino acid biosynthesis:Pyruvate family:Biosynthesis of cofactors, prosthetic groups, and carriers:Other:Menaquinone and ubiquinone:Chlorophyll and bacteriochlorphyll:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Protein fate:Purines, pyrimidines, nucleosides, and nucleotides:Fatty acid and phospholipid metabolism:Chlorophyll and bacteriochlorphyll:Menaquinone and ubiquinone:Other:Pyruvate family:Carbohydrate Metabolism:Amino acids, peptides and amines:Protein folding and stabilization:Purine ribonucleotide biosynthesis:Biosynthesis:Global:Environmental Information Processing:Metabolism:Metabolism:Membrane Transport:Xenobiotics Biodegradation and Metabolism:Metabolism of Terpenoids and Polyketides:Metabolism of Cofactors and Vitamins:Amino Acid Metabolism:Nucleotide Metabolism:Lipid Metabolism:Lipid Metabolism:Energy Metabolism:Energy Metabolism:Nucleotide Metabolism:Carbohydrate Metabolism:Amino Acid Metabolism:Metabolism:Poorly characterized:Metabolism of Cofactors and Vitamins:Metabolism:Cellular processes and signaling:Metabolism of Terpenoids and Polyketides:Information storage and processing:Xenobiotics Biodegradation and Metabolism:Environmental Information Processing:Membrane Transport" 105 "Glutamate-1-semialdehyde aminotransferase:Phosphoglucomutase:Tryptophan synthase alpha chain:Trk-type K+ transport systems, membrane components:Coproporphyrinogen III oxidase:ATPase components of ABC transporters with duplicated ATPase domains:Predicted Zn-dependent peptidases:Predicted permease:Chemotaxis protein histidine kinase and related kinases:cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases:Predicted permeases:Phosphoglyceromutase:3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases:FOG: CheY-like receiver:Chemotaxis signal transduction protein:Methyl-accepting chemotaxis protein:Amino acid transport and metabolism:Amino acid transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Cell motility:Cell motility:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Glycolysis / Gluconeogenesis:Pentose phosphate pathway:Galactose metabolism:Fatty acid biosynthesis:Purine metabolism:Glycine serine and threonine metabolism:Phenylalanine tyrosine and tryptophan biosynthesis:Starch and sucrose metabolism:Amino sugar and nucleotide sugar metabolism:Streptomycin biosynthesis:Methane metabolism:Porphyrin and chlorophyll metabolism:Metabolic pathways:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Two-component system:General function prediction only:General function prediction only:Signal transduction mechanisms:Signal transduction mechanisms:trpA:hemL:2a38:pgm_bpd_ind:fabZ:Environmental Information Processing:Signal Transduction:Amino Acid Metabolism:Global:Metabolism:Nucleotide Metabolism:Lipid Metabolism:Energy Metabolism:Carbohydrate Metabolism:Metabolism:Carbohydrate Metabolism:Energy metabolism:Glycolysis/gluconeogenesis:Fatty acid and phospholipid metabolism:Biosynthesis:Transport and binding proteins:Cations and iron carrying compounds:Amino acid biosynthesis:Aromatic amino acid family:Biosynthesis of cofactors, prosthetic groups, and carriers:Heme, porphyrin, and cobalamin:Cellular processes and signaling:Metabolism:Poorly characterized:Poorly characterized:Metabolism:Cellular processes and signaling:Biosynthesis of cofactors, prosthetic groups, and carriers:Amino acid biosynthesis:Transport and binding proteins:Fatty acid and phospholipid metabolism:Energy metabolism:Heme, porphyrin, and cobalamin:Aromatic amino acid family:Cations and iron carrying compounds:Biosynthesis:Glycolysis/gluconeogenesis:Global:Environmental Information Processing:Metabolism:Metabolism:Signal Transduction:Biosynthesis of Other Secondary Metabolites:Metabolism of Cofactors and Vitamins:Amino Acid Metabolism:Nucleotide Metabolism:Lipid Metabolism:Biosynthesis of Other Secondary Metabolites:Energy Metabolism:Metabolism of Cofactors and Vitamins" 106 "Energy production and conversion:Energy production and conversion:Pentose-5-phosphate-3-epimerase:Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase:S-adenosylmethionine synthetase:Carbonic anhydrase:Uroporphyrinogen-III decarboxylase:Glycosyltransferase:K+ transport systems, NAD-binding component:Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit:Dioxygenases related to 2-nitropropane dioxygenase:Predicted hydrolase of the HAD superfamily:Amino acid transport and metabolism:Amino acid transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Glycolysis / Gluconeogenesis:Citrate cycle (TCA cycle):Pentose phosphate pathway:Pentose and glucuronate interconversions:Purine metabolism:Alanine aspartate and glutamate metabolism:Glycine serine and threonine metabolism:Cysteine and methionine metabolism:Valine leucine and isoleucine biosynthesis:Selenocompound metabolism:Pyruvate metabolism:Butanoate metabolism:Methane metabolism:Carbon fixation in photosynthetic organisms:Porphyrin and chlorophyll metabolism:Nitrogen metabolism:Metabolic pathways:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:General function prediction only:General function prediction only:metK:rpe:IMP_DH_rel_2:hemE:HAD-SF-IIIA:PDH_E1_alph_y:Other:Energy metabolism:Pentose phosphate pathway:Pyruvate dehydrogenase:Unknown function:Enzymes of unknown specificity:General:Biosynthesis of cofactors, prosthetic groups, and carriers:Heme, porphyrin, and cobalamin:Cellular processes and signaling:Metabolism:Poorly characterized:Energy metabolism:Central intermediary metabolism:Heme, porphyrin, and cobalamin:General:Enzymes of unknown specificity:Pyruvate dehydrogenase:Pentose phosphate pathway:Other:Global:Metabolism:Metabolism:Metabolism of Cofactors and Vitamins:Metabolism of Other Amino Acids:Amino Acid Metabolism:Nucleotide Metabolism:Carbohydrate Metabolism:Energy Metabolism:Metabolism:Carbohydrate Metabolism:Energy Metabolism:Nucleotide Metabolism:Poorly characterized:Amino Acid Metabolism:Metabolism:Cellular processes and signaling:Biosynthesis of cofactors, prosthetic groups, and carriers:Metabolism of Other Amino Acids:Unknown function:Metabolism of Cofactors and Vitamins:Global:Metabolism:Central intermediary metabolism" 107 "Energy production and conversion:Energy production and conversion:Methionine aminopeptidase:Isopropylmalate/homocitrate/citramalate synthases:N-formylmethionyl-tRNA deformylase:Lactoylglutathione lyase and related lyases:ATP-dependent Zn proteases:Threonine synthase:Thiol-disulfide isomerase and thioredoxins:Predicted GTPase:DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32):Single-stranded DNA-binding protein:Signal peptidase I:Thioredoxin-like proteins and domains:Protease subunit of ATP-dependent Clp proteases:Penicillin tolerance protein:Ferredoxin:Peroxiredoxin:Disulfide bond chaperones of the HSP33 family:FOG: HEAT repeat:Predicted transcriptional regulators:Uncharacterized conserved protein, contains double-stranded beta-helix domain:ATP:corrinoid adenosyltransferase:Predicted GTPase:Ferredoxin-thioredoxin reductase, catalytic subunit:Amino acid transport and metabolism:Amino acid transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Photosynthesis - antenna proteins:Glycine serine and threonine metabolism:Cysteine and methionine metabolism:Valine leucine and isoleucine biosynthesis:Pyruvate metabolism:Vitamin B6 metabolism:Porphyrin and chlorophyll metabolism:Terpenoid backbone biosynthesis:Metabolic pathways:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:RNA polymerase:DNA replication:Protein export:Mismatch repair:Homologous recombination:General function prediction only:General function prediction only:Function unknown:Function unknown:glyox_I:pept_deformyl:ispH_lytB:small_GTP:thrC:clpP:met_pdase_I:ssb:cobA:leuA_bact:FtsH_fam:sigpep_I_bact:Obg_CgtA:sigma70-ECF:Intracellular trafficking, secretion, and vesicular transport:Intracellular trafficking, secretion, and vesicular transport:Protein modification and repair:Unknown function:General:Amino acid biosynthesis:Aspartate family:Pyruvate family:Biosynthesis of cofactors, prosthetic groups, and carriers:Other:Heme, porphyrin, and cobalamin:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Biosynthesis of cofactors, prosthetic groups, and carriers:Amino acid biosynthesis:Unknown function:Protein fate:Protein synthesis:DNA metabolism:Energy metabolism:Heme, porphyrin, and cobalamin:Other:Pyruvate family:Aspartate family:General:Protein modification and repair:Degradation of proteins, peptides, and glycopeptides:Protein and peptide secretion and trafficking:Other:DNA replication, recombination, and repair:Other:Global:Genetic Information Processing:Metabolism:Metabolism:Replication and Repair:Folding Sorting and Degradation:Transcription:Metabolism of Terpenoids and Polyketides:Metabolism of Cofactors and Vitamins:Amino Acid Metabolism:Amino Acid Metabolism:Energy Metabolism:Energy Metabolism:Carbohydrate Metabolism:Metabolism:Metabolism of Cofactors and Vitamins:Poorly characterized:Metabolism:Metabolism of Terpenoids and Polyketides:Cellular processes and signaling:Genetic Information Processing:Transcription:Folding Sorting and Degradation:Replication and Repair:Global:Metabolism:Information storage and processing:Carbohydrate Metabolism:Energy metabolism:Other:DNA metabolism:DNA replication, recombination, and repair:Protein synthesis:Other:Protein fate:Protein and peptide secretion and trafficking:Degradation of proteins, peptides, and glycopeptides" 108 "Energy production and conversion:Energy production and conversion:Ribose 5-phosphate isomerase:Tryptophan synthase alpha chain:Trk-type K+ transport systems, membrane components:FAD/FMN-containing dehydrogenases:Panthothenate synthetase:Fatty acid/phospholipid biosynthesis enzyme:ATPase components of ABC transporters with duplicated ATPase domains:Adenylylsulfate kinase and related kinases:Isocitrate dehydrogenases:Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily):Predicted Zn-dependent peptidases:3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases:Uncharacterized protein conserved in bacteria:Amino acid transport and metabolism:Amino acid transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Citrate cycle (TCA cycle):Pentose phosphate pathway:Fatty acid biosynthesis:Purine metabolism:Pyrimidine metabolism:Glycine serine and threonine metabolism:Chlorocyclohexane and chlorobenzene degradation:Phenylalanine tyrosine and tryptophan biosynthesis:beta-Alanine metabolism:Selenocompound metabolism:Glutathione metabolism:Glycerolipid metabolism:Glycerophospholipid metabolism:Chloroalkane and chloroalkene degradation:Glyoxylate and dicarboxylate metabolism:Carbon fixation in photosynthetic organisms:Carbon fixation pathways in prokaryotes:Pantothenate and CoA biosynthesis:Sulfur metabolism:Metabolic pathways:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:General function prediction only:General function prediction only:Function unknown:Function unknown:cmk:rpiA:plsX:prok_nadp_idh:trpA:apsK:2a38:fabZ:Xenobiotics Biodegradation and Metabolism:Poorly characterized:Metabolism:Global:Metabolism:Amino acid biosynthesis:Transport and binding proteins:Purines, pyrimidines, nucleosides, and nucleotides:Central intermediary metabolism:Sulfur metabolism:Energy metabolism:Pentose phosphate pathway:TCA cycle:Fatty acid and phospholipid metabolism:Biosynthesis:Purines, pyrimidines, nucleosides, and nucleotides:Nucleotide and nucleoside interconversions:Transport and binding proteins:Cations and iron carrying compounds:Amino acid biosynthesis:Aromatic amino acid family:Metabolism:Poorly characterized:Fatty acid and phospholipid metabolism:Energy metabolism:Central intermediary metabolism:Aromatic amino acid family:Cations and iron carrying compounds:Nucleotide and nucleoside interconversions:Biosynthesis:Carbohydrate Metabolism:TCA cycle:Pentose phosphate pathway:Sulfur metabolism:Global:Metabolism:Metabolism:Xenobiotics Biodegradation and Metabolism:Metabolism of Cofactors and Vitamins:Metabolism of Other Amino Acids:Amino Acid Metabolism:Nucleotide Metabolism:Lipid Metabolism:Amino Acid Metabolism:Energy Metabolism:Nucleotide Metabolism:Metabolism of Other Amino Acids:Lipid Metabolism:Energy Metabolism:Carbohydrate Metabolism:Metabolism of Cofactors and Vitamins:Metabolism" 109 "Energy production and conversion:Energy production and conversion:Acetylglutamate semialdehyde dehydrogenase:Argininosuccinate synthase:Phosphoribosylamine-glycine ligase:Putative translation initiation inhibitor, yjgF family:Predicted amidohydrolase:Aspartate/tyrosine/aromatic aminotransferase:Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains:Nucleoside-diphosphate-sugar epimerases:Aspartokinases:Adenylylsulfate kinase and related kinases:ADP-heptose:LPS heptosyltransferase:NADH:ubiquinone oxidoreductase subunit 4 (chain M):Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases):Coenzyme F420-reducing hydrogenase, beta subunit:N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains):Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon):Predicted metal-dependent membrane protease:Amino acid transport and metabolism:Amino acid transport and metabolism:Nucleotide transport and metabolism:Nucleotide transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Fructose and mannose metabolism:Fatty acid biosynthesis:Oxidative phosphorylation:Purine metabolism:Alanine aspartate and glutamate metabolism:Glycine serine and threonine metabolism:Cysteine and methionine metabolism:Lysine biosynthesis:Arginine and proline metabolism:Tyrosine metabolism:Phenylalanine metabolism:Phenylalanine tyrosine and tryptophan biosynthesis:Novobiocin biosynthesis:Selenocompound metabolism:Amino sugar and nucleotide sugar metabolism:Methane metabolism:Carbon fixation in photosynthetic organisms:Sulfur metabolism:Biosynthesis of unsaturated fatty acids:Metabolic pathways:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Secondary metabolites biosynthesis, transport and catabolism:Secondary metabolites biosynthesis, transport and catabolism:General function prediction only:General function prediction only:TIGR00004:argG:apsK:asp_kin_monofn:purD:glmS:glmU:3oxo_ACP_reduc:argC:NDH_I_M:Biosynthesis of Other Secondary Metabolites:Metabolism of Other Amino Acids:Amino Acid Metabolism:Nucleotide Metabolism:Lipid Metabolism:Energy Metabolism:Carbohydrate Metabolism:Metabolism:Carbohydrate Metabolism:Central intermediary metabolism:Amino sugars:Sulfur metabolism:Energy metabolism:Electron transport:Fatty acid and phospholipid metabolism:Biosynthesis:Purines, pyrimidines, nucleosides, and nucleotides:Purine ribonucleotide biosynthesis:Transcription:Degradation of RNA:Amino acid biosynthesis:Aspartate family:Glutamate family:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Poorly characterized:Metabolism:Cellular processes and signaling:Information storage and processing:Amino acid biosynthesis:Transcription:Purines, pyrimidines, nucleosides, and nucleotides:Fatty acid and phospholipid metabolism:Energy metabolism:Central intermediary metabolism:Glutamate family:Aspartate family:Degradation of RNA:Purine ribonucleotide biosynthesis:Biosynthesis:Electron transport:Sulfur metabolism:Amino sugars:Global:Metabolism:Metabolism:Biosynthesis of Other Secondary Metabolites:Metabolism of Other Amino Acids:Amino Acid Metabolism:Nucleotide Metabolism:Lipid Metabolism:Metabolism:Energy Metabolism:Global" 110 "Energy production and conversion:Energy production and conversion:Diaminopimelate decarboxylase:Glutamate synthase domain 2:Glutamine amidotransferase:Dihydroxyacid dehydratase/phosphogluconate dehydratase:Ribosomal protein S15P/S13E:Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit:Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit:Sulfite reductase, alpha subunit (flavoprotein):FKBP-type peptidyl-prolyl cis-trans isomerases 1:Ferredoxin:Predicted integral membrane protein:16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases:NADH:flavin oxidoreductases, Old Yellow Enzyme family:Peptide chain release factor RF-3:Amino acid transport and metabolism:Amino acid transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Replication, recombination and repair:Replication, recombination and repair:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Photosynthesis:Valine leucine and isoleucine biosynthesis:Lysine biosynthesis:Histidine metabolism:Nitrotoluene degradation:Pantothenate and CoA biosynthesis:Nitrogen metabolism:Metabolic pathways:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Ribosome:Function unknown:Function unknown:TIGR00093:ilvD:small_GTP:S15_bact:lysA:gyrB:gyrA:IMP_synth_hisH:fdx_plant:Ald_deCOase:Other:DNA metabolism:DNA replication, recombination, and repair:Protein synthesis:Ribosomal proteins: synthesis and modification:tRNA and rRNA base modification:Unknown function:General:Amino acid biosynthesis:Aspartate family:Pyruvate family:Histidine family:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Amino acid biosynthesis:Unknown function:Protein synthesis:DNA metabolism:Central intermediary metabolism:Histidine family:Pyruvate family:Aspartate family:General:tRNA and rRNA base modification:Ribosomal proteins: synthesis and modification:DNA replication, recombination, and repair:Other:Global:Genetic Information Processing:Metabolism:Metabolism:Translation:Xenobiotics Biodegradation and Metabolism:Metabolism of Cofactors and Vitamins:Energy Metabolism:Amino Acid Metabolism:Metabolism:Amino Acid Metabolism:Poorly characterized:Metabolism:Cellular processes and signaling:Metabolism of Cofactors and Vitamins:Information storage and processing:Xenobiotics Biodegradation and Metabolism:Genetic Information Processing:Translation:Global:Metabolism:Energy Metabolism:Central intermediary metabolism" 111 "NhaP-type Na+/H+ and K+/H+ antiporters:Fucose permease:Putative transcriptional regulator, homolog of Bvg accessory factor:Acyl-CoA dehydrogenases:Phosphopantetheinyl transferase:Predicted nucleic acid-binding protein, contains PIN domain:Uncharacterized protein conserved in bacteria:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Transcription:Transcription:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Pantothenate and CoA biosynthesis:Metabolic pathways:General function prediction only:General function prediction only:Function unknown:Function unknown:baf:TIGR02466:Biosynthesis of cofactors, prosthetic groups, and carriers:Metabolism:Metabolism:Global:Conserved:Pantothenate and coenzyme A:Hypothetical proteins:Biosynthesis of cofactors, prosthetic groups, and carriers:Information storage and processing:Metabolism:Poorly characterized:Metabolism:Metabolism of Cofactors and Vitamins:Global:Metabolism:Hypothetical proteins:Conserved:Metabolism of Cofactors and Vitamins:Pantothenate and coenzyme A:Information storage and processing:Metabolism:Poorly characterized" 112 "Energy production and conversion:Energy production and conversion:Diaminopimelate decarboxylase:Glutamate synthase domain 2:Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases:Acetolactate synthase, small (regulatory) subunit:Isocitrate/isopropylmalate dehydrogenase:FKBP-type peptidyl-prolyl cis-trans isomerases 1:Ferredoxin:Predicted integral membrane protein:Cytochrome c biogenesis protein:Ribosome-binding factor A:Deoxyxylulose-5-phosphate synthase:Isochorismate synthase:Preprotein translocase subunit SecG:Uncharacterized conserved protein:Na+/melibiose symporter and related transporters:Amino acid transport and metabolism:Amino acid transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Glycolysis / Gluconeogenesis:Ubiquinone and other terpenoid-quinone biosynthesis:Photosynthesis:Valine leucine and isoleucine biosynthesis:Lysine biosynthesis:Pyruvate metabolism:Propanoate metabolism:Butanoate metabolism:C5-Branched dibasic acid metabolism:Methane metabolism:Carbon fixation pathways in prokaryotes:Pantothenate and CoA biosynthesis:Terpenoid backbone biosynthesis:Nitrogen metabolism:Metabolic pathways:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Protein export:Bacterial secretion system:Secondary metabolites biosynthesis, transport and catabolism:Secondary metabolites biosynthesis, transport and catabolism:Function unknown:Function unknown:rbfA:acolac_sm:leuB:dxs:isochor_syn:secG:lysA:fdx_plant:Ac_CoA_lig_AcsA:PS_II_psb27:Intracellular trafficking, secretion, and vesicular transport:Intracellular trafficking, secretion, and vesicular transport:Global:Metabolism:Metabolism of Cofactors and Vitamins:Amino Acid Metabolism:Energy Metabolism:Carbohydrate Metabolism:Metabolism:Poorly characterized:Metabolism:Cellular processes and signaling:Information storage and processing:Carbohydrate Metabolism:Energy metabolism:Photosynthesis:Transcription:RNA processing:Protein fate:Protein and peptide secretion and trafficking:Amino acid biosynthesis:Aspartate family:Pyruvate family:Biosynthesis of cofactors, prosthetic groups, and carriers:Menaquinone and ubiquinone:Thiamine:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Biosynthesis of cofactors, prosthetic groups, and carriers:Amino acid biosynthesis:Protein fate:Transcription:Energy metabolism:Thiamine:Menaquinone and ubiquinone:Pyruvate family:Aspartate family:Protein and peptide secretion and trafficking:RNA processing:Photosynthesis:Global:Environmental Information Processing:Genetic Information Processing:Metabolism:Metabolism:Membrane Transport:Folding Sorting and Degradation:Metabolism of Terpenoids and Polyketides:Metabolism of Cofactors and Vitamins:Amino Acid Metabolism:Folding Sorting and Degradation:Energy Metabolism:Genetic Information Processing:Environmental Information Processing:Membrane Transport:Metabolism of Terpenoids and Polyketides" 113 "Chloride channel protein EriC:Glutamine synthetase:Superfamily I DNA and RNA helicases:Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis:Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis):Predicted UDP-glucose 6-dehydrogenase:Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes:ABC-type sulfate transport system, periplasmic component:dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes:Uncharacterized protein conserved in bacteria:Carbonic anhydrase:Predicted signal transduction protein containing sensor and EAL domains:Amino acid transport and metabolism:Amino acid transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Replication, recombination and repair:Replication, recombination and repair:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Pentose and glucuronate interconversions:Ascorbate and aldarate metabolism:Alanine aspartate and glutamate metabolism:Arginine and proline metabolism:Starch and sucrose metabolism:Amino sugar and nucleotide sugar metabolism:Streptomycin biosynthesis:Polyketide sugar unit biosynthesis:Nitrogen metabolism:Metabolic pathways:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:ABC transporters:Two-component system:Nucleotide excision repair:Mismatch repair:General function prediction only:General function prediction only:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:RNAse_H_YqgF:3a0106s03:rmlC:NDP-sugDHase:gln_synth_III:F420_cofG:Poorly characterized:Metabolism:Environmental Information Processing:Membrane Transport:Cellular processes and signaling:Signal Transduction:Information storage and processing:Global:Metabolism:Cell envelope:Biosynthesis of cofactors, prosthetic groups, and carriers:Transport and binding proteins:Anions:Unknown function:General:Biosynthesis of cofactors, prosthetic groups, and carriers:Other:Cell envelope:Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Unknown function:Transport and binding proteins:Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides:Other:General:Anions:Carbohydrate Metabolism:Global:Environmental Information Processing:Genetic Information Processing:Metabolism:Metabolism:Signal Transduction:Membrane Transport:Replication and Repair:Biosynthesis of Other Secondary Metabolites:Metabolism of Terpenoids and Polyketides:Amino Acid Metabolism:Amino Acid Metabolism:Energy Metabolism:Energy Metabolism:Metabolism of Terpenoids and Polyketides:Carbohydrate Metabolism:Biosynthesis of Other Secondary Metabolites:Metabolism:Genetic Information Processing:Replication and Repair" 114 "Molecular chaperone (small heat shock protein):3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes:Co-chaperonin GroES (HSP10):Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain:Molecular chaperone:Chaperonin GroEL (HSP60 family):ATPases with chaperone activity, ATP-binding subunit:DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32):Integral membrane protein, interacts with FtsH:Fe2+/Zn2+ uptake regulation proteins:Predicted nucleoside-diphosphate sugar epimerase:DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog:Phage shock protein A (IM30), suppresses sigma54-dependent transcription:GTPases:Predicted GTPase:P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein:Uncharacterized conserved protein:Amino acid transport and metabolism:Amino acid transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Transcription:Transcription:Cell motility:Cell motility:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Photosynthesis:Sulfur metabolism:Metabolic pathways:Microbial metabolism in diverse environments:RNA degradation:RNA polymerase:General function prediction only:General function prediction only:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:cysH:yfcH:GroEL:prok_dnaK:sigma70-ECF:PS_II_psb28:GTP_HflX:chaperone_ClpB:Intracellular trafficking, secretion, and vesicular transport:Intracellular trafficking, secretion, and vesicular transport:Protein folding and stabilization:Transcription:Folding Sorting and Degradation:Metabolism:Metabolism:Genetic Information Processing:Global:Sulfur metabolism:Photosynthesis:Protein folding and stabilization:Conserved:General:Central intermediary metabolism:Energy metabolism:Protein fate:Hypothetical proteins:Unknown function:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Energy Metabolism:Genetic Information Processing:Transcription:Folding Sorting and Degradation:Global:Metabolism:Central intermediary metabolism:Sulfur metabolism:Energy metabolism:Photosynthesis:Protein fate:Energy Metabolism:Hypothetical proteins:Conserved:Unknown function:General:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized" 115 "Energy production and conversion:Energy production and conversion:Sulfite reductase, beta subunit (hemoprotein):Glutamine synthetase:Nucleoside-diphosphate-sugar epimerases:Uridine kinase:ABC-type nitrate/sulfonate/bicarbonate transport system, permease component:ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components:ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component:Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor):Ribulose bisphosphate carboxylase small subunit:Type II secretory pathway, component HofQ:Amino acid transport and metabolism:Amino acid transport and metabolism:Nucleotide transport and metabolism:Nucleotide transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Photosynthesis:Photosynthesis - antenna proteins:Alanine aspartate and glutamate metabolism:Arginine and proline metabolism:Amino sugar and nucleotide sugar metabolism:Glycerolipid metabolism:Glyoxylate and dicarboxylate metabolism:Carbon fixation in photosynthetic organisms:Nitrogen metabolism:Metabolic pathways:Microbial metabolism in diverse environments:ABC transporters:Two-component system:Signal transduction mechanisms:Signal transduction mechanisms:ant_ant_sig:GlnA:psbA:cytb6/f_IV:ntrB:ntrCD:CobG:Intracellular trafficking, secretion, and vesicular transport:Intracellular trafficking, secretion, and vesicular transport:Membrane Transport:Energy Metabolism:Lipid Metabolism:Amino Acid Metabolism:Membrane Transport:Signal Transduction:Metabolism:Metabolism:Environmental Information Processing:Global:Photosynthesis:Protein interactions:Anions:Other:Glutamate family:Heme, porphyrin, and cobalamin:Energy metabolism:Regulatory functions:Transport and binding proteins:Amino acid biosynthesis:Biosynthesis of cofactors, prosthetic groups, and carriers:Cellular processes and signaling:Metabolism:Metabolism:Carbohydrate Metabolism:Energy Metabolism:Lipid Metabolism:Amino Acid Metabolism:Environmental Information Processing:Carbohydrate Metabolism:Signal Transduction:Global:Metabolism:Energy metabolism:Photosynthesis:Regulatory functions:Protein interactions:Transport and binding proteins:Anions:Other:Amino acid biosynthesis:Glutamate family:Biosynthesis of cofactors, prosthetic groups, and carriers:Heme, porphyrin, and cobalamin:Cellular processes and signaling:Metabolism" 116 "Nicotinamide mononucleotide adenylyltransferase:DNA or RNA helicases of superfamily II:Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes:ABC-type Mn2+/Zn2+ transport systems, permease components:Bacteriophage tail assembly protein:Amino acid transport and metabolism:Amino acid transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Thiamine metabolism:Nicotinate and nicotinamide metabolism:Metabolic pathways:Sulfur relay system:General function prediction only:General function prediction only:cyt_tran_rel:Folding Sorting and Degradation:Folding Sorting and Degradation:Metabolism:Metabolism:Genetic Information Processing:Global:Information storage and processing:Metabolism:Poorly characterized:Metabolism:Metabolism of Cofactors and Vitamins:Genetic Information Processing:Metabolism of Cofactors and Vitamins:Global:Metabolism:Information storage and processing:Metabolism:Poorly characterized" 117 "Energy production and conversion:Energy production and conversion:Stress-induced morphogen (activity unknown):Glutaredoxin-related protein:Ribosomal protein L19:Molecular chaperone:DnaJ-class molecular chaperone with C-terminal Zn finger domain:Threonine synthase:GMP synthase, PP-ATPase domain/subunit:Molecular chaperone GrpE (heat shock protein):Predicted Zn-dependent peptidases:ABC-type transport system involved in Fe-S cluster assembly, permease component:3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase:Predicted permeases:Methyl-accepting chemotaxis protein:Predicted transcriptional regulator:Fructosamine-3-kinase:Predicted membrane protein:Uncharacterized protein conserved in bacteria:Ferredoxin-thioredoxin reductase, catalytic subunit:Amino acid transport and metabolism:Amino acid transport and metabolism:Nucleotide transport and metabolism:Nucleotide transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:Cell motility:Cell motility:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Photosynthesis:Purine metabolism:Glycine serine and threonine metabolism:Phenylalanine tyrosine and tryptophan biosynthesis:Vitamin B6 metabolism:Metabolic pathways:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Two-component system:Ribosome:RNA degradation:General function prediction only:General function prediction only:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:aroFGH:thrC:TIGR00365:guaA_Cterm:rplS_bact:sufB:DnaJ_bact:prok_dnaK:SufR_cyano:PS_II_psb28:Cellular processes and signaling:Metabolism:Poorly characterized:Electron transport:Nucleotide Metabolism:Amino Acid Metabolism:Metabolism of Cofactors and Vitamins:Translation:Folding Sorting and Degradation:Signal Transduction:Metabolism:Metabolism:Genetic Information Processing:Environmental Information Processing:Global:Electron transport:Photosynthesis:Purine ribonucleotide biosynthesis:DNA interactions:Ribosomal proteins: synthesis and modification:Protein folding and stabilization:Aromatic amino acid family:Aspartate family:Other:Energy metabolism:Purines, pyrimidines, nucleosides, and nucleotides:Regulatory functions:Protein synthesis:Protein fate:Amino acid biosynthesis:Biosynthesis of cofactors, prosthetic groups, and carriers:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Energy Metabolism:Nucleotide Metabolism:Amino Acid Metabolism:Metabolism of Cofactors and Vitamins:Genetic Information Processing:Translation:Folding Sorting and Degradation:Environmental Information Processing:Signal Transduction:Global:Metabolism:Energy metabolism:Energy Metabolism:Photosynthesis:Purines, pyrimidines, nucleosides, and nucleotides:Purine ribonucleotide biosynthesis:Regulatory functions:DNA interactions:Protein synthesis:Ribosomal proteins: synthesis and modification:Protein fate:Protein folding and stabilization:Amino acid biosynthesis:Aromatic amino acid family:Aspartate family:Biosynthesis of cofactors, prosthetic groups, and carriers:Other:Information storage and processing" 118 "Energy production and conversion:Energy production and conversion:Aspartate oxidase:Predicted N6-adenine-specific DNA methylase:Glycogen synthase:UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase:Membrane GTPase LepA:ABC-type dipeptide/oligopeptide/nickel transport systems, permease components:Deoxycytidine deaminase:DNA polymerase I - 3'-5' exonuclease and polymerase domains:Biopolymer transport proteins:Predicted sulfurtransferase:FOG: HEAT repeat:Uncharacterized conserved protein:Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase:Predicted bile acid beta-glucosidase:Predicted permease, DMT superfamily:Amino acid transport and metabolism:Amino acid transport and metabolism:Nucleotide transport and metabolism:Nucleotide transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Replication, recombination and repair:Replication, recombination and repair:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Purine metabolism:Pyrimidine metabolism:Alanine aspartate and glutamate metabolism:Valine leucine and isoleucine biosynthesis:Starch and sucrose metabolism:Peptidoglycan biosynthesis:Nicotinate and nicotinamide metabolism:Metabolic pathways:Biosynthesis of secondary metabolites:ABC transporters:Ribosome:DNA replication:Base excision repair:Nucleotide excision repair:Homologous recombination:General function prediction only:General function prediction only:Function unknown:Function unknown:small_GTP:mraY:nadB:pola:rpmF_bact:glgA:dCTP_deam:Intracellular trafficking, secretion, and vesicular transport:Intracellular trafficking, secretion, and vesicular transport:Metabolism of Cofactors and Vitamins:Glycan Biosynthesis and Metabolism:Amino Acid Metabolism:Nucleotide Metabolism:Environmental Information Processing:Membrane Transport:Carbohydrate Metabolism:Global:Metabolism:Metabolism:Poorly characterized:Metabolism:Cellular processes and signaling:Information storage and processing:Cell envelope:Carbohydrate Metabolism:Energy metabolism:Biosynthesis and degradation of polysaccharides:Purines, pyrimidines, nucleosides, and nucleotides:2'-Deoxyribonucleotide metabolism:DNA metabolism:DNA replication, recombination, and repair:Protein synthesis:Ribosomal proteins: synthesis and modification:Unknown function:General:Biosynthesis of cofactors, prosthetic groups, and carriers:Pyridine nucleotides:Cell envelope:Biosynthesis and degradation of murein sacculus and peptidoglycan:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Biosynthesis of cofactors, prosthetic groups, and carriers:Unknown function:Protein synthesis:DNA metabolism:Purines, pyrimidines, nucleosides, and nucleotides:Energy metabolism:Biosynthesis and degradation of murein sacculus and peptidoglycan:Pyridine nucleotides:General:Ribosomal proteins: synthesis and modification:DNA replication, recombination, and repair:2'-Deoxyribonucleotide metabolism:Biosynthesis and degradation of polysaccharides:Global:Environmental Information Processing:Genetic Information Processing:Metabolism:Metabolism:Membrane Transport:Replication and Repair:Translation:Metabolism of Cofactors and Vitamins:Glycan Biosynthesis and Metabolism:Amino Acid Metabolism:Translation:Nucleotide Metabolism:Genetic Information Processing:Replication and Repair" 119 "Ribosomal protein L22:Ribosomal protein S3:Ribosomal protein L14:Ribosomal protein L5:Ribosomal protein S8:Ribosomal protein L6P/L9E:Ribosomal protein S19:Ribosomal protein S17:Ribosomal protein L16/L10E:Ribosomal protein L24:Ribosomal protein L18:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Ribosome:L18_bact:rpsC_bact:rplV_bact:rpsS_bact:rplN_bact:rplX_bact:rplP_bact:S17_bact:L6_bact:Ribosomal proteins: synthesis and modification:Protein synthesis:Translation:Translation:Genetic Information Processing:Information storage and processing:Protein synthesis:Ribosomal proteins: synthesis and modification:Information storage and processing:Genetic Information Processing" 120 "Energy production and conversion:Energy production and conversion:Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase):Aspartate oxidase:Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase:Excinuclease ATPase subunit:Putative translation initiation inhibitor, yjgF family:tRNA delta(2)-isopentenylpyrophosphate transferase:Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family:Phosphatidylglycerophosphate synthase:ABC-type nitrate/sulfonate/bicarbonate transport system, permease component:UDP-3-O-acyl-N-acetylglucosamine deacetylase:ABC-type amino acid transport/signal transduction systems, periplasmic component/domain:dTDP-4-dehydrorhamnose reductase:Cytochrome c, mono- and diheme variants:Ribosomal protein L11 methylase:Predicted membrane protein:Lysophospholipase L1 and related esterases:Uncharacterized conserved protein:Predicted membrane protein:Short-chain alcohol dehydrogenase of unknown specificity:Amino acid transport and metabolism:Amino acid transport and metabolism:Nucleotide transport and metabolism:Nucleotide transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Replication, recombination and repair:Replication, recombination and repair:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Photosynthesis:Purine metabolism:Alanine aspartate and glutamate metabolism:Histidine metabolism:Tyrosine metabolism:Phenylalanine metabolism:Phenylalanine tyrosine and tryptophan biosynthesis:Novobiocin biosynthesis:Streptomycin biosynthesis:Lipopolysaccharide biosynthesis:Inositol phosphate metabolism:Glycerophospholipid metabolism:One carbon pool by folate:Nicotinate and nicotinamide metabolism:Metabolic pathways:Biosynthesis of secondary metabolites:ABC transporters:Nucleotide excision repair:General function prediction only:General function prediction only:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:miaA:lpxC:prmA:nadB:pgsA:uvra:purT:Metabolism:Fatty acid and phospholipid metabolism:Biosynthesis:Purines, pyrimidines, nucleosides, and nucleotides:Purine ribonucleotide biosynthesis:DNA metabolism:DNA replication, recombination, and repair:Protein synthesis:Ribosomal proteins: synthesis and modification:tRNA and rRNA base modification:Biosynthesis of cofactors, prosthetic groups, and carriers:Pyridine nucleotides:Cell envelope:Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Cell envelope:Biosynthesis of cofactors, prosthetic groups, and carriers:Protein synthesis:DNA metabolism:Purines, pyrimidines, nucleosides, and nucleotides:Fatty acid and phospholipid metabolism:Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides:Pyridine nucleotides:tRNA and rRNA base modification:Ribosomal proteins: synthesis and modification:DNA replication, recombination, and repair:Purine ribonucleotide biosynthesis:Biosynthesis:Global:Environmental Information Processing:Genetic Information Processing:Metabolism:Metabolism:Membrane Transport:Replication and Repair:Biosynthesis of Other Secondary Metabolites:Metabolism of Cofactors and Vitamins:Glycan Biosynthesis and Metabolism:Amino Acid Metabolism:Nucleotide Metabolism:Lipid Metabolism:Carbohydrate Metabolism:Energy Metabolism:Nucleotide Metabolism:Lipid Metabolism:Amino Acid Metabolism:Energy Metabolism:Carbohydrate Metabolism:Metabolism:Poorly characterized:Metabolism:Glycan Biosynthesis and Metabolism:Cellular processes and signaling:Metabolism of Cofactors and Vitamins:Biosynthesis of Other Secondary Metabolites:Information storage and processing:Genetic Information Processing:Replication and Repair:Environmental Information Processing:Membrane Transport:Global" 121 "Energy production and conversion:Energy production and conversion:Acetyltransferase (isoleucine patch superfamily):Universal stress protein UspA and related nucleotide-binding proteins:Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake:NADH:ubiquinone oxidoreductase subunit 4 (chain M):Phosphomannomutase:Transglutaminase-like enzymes, putative cysteine proteases:Nitrogenase subunit NifH (ATPase):Micrococcal nuclease (thermonuclease) homologs:4-alpha-glucanotransferase:DNA repair proteins:Pterin-4a-carbinolamine dehydratase:Na+/melibiose symporter and related transporters:Cation transport ATPase:Uncharacterized protein conserved in bacteria:Predicted ATPase (AAA+ superfamily):Nitrogenase molybdenum-iron protein, alpha and beta chains:Amino acid transport and metabolism:Amino acid transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Replication, recombination and repair:Replication, recombination and repair:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Fructose and mannose metabolism:Oxidative phosphorylation:Histidine metabolism:Tyrosine metabolism:Selenocompound metabolism:Starch and sucrose metabolism:Amino sugar and nucleotide sugar metabolism:Polycyclic aromatic hydrocarbon degradation:Porphyrin and chlorophyll metabolism:Metabolic pathways:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:General function prediction only:General function prediction only:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:malQ:radc:dprA:gph:DPOR_bchN:DPOR_bchL:ATPase-IB1_Cu:NDH_I_M:Intracellular trafficking, secretion, and vesicular transport:Intracellular trafficking, secretion, and vesicular transport:Biosynthesis and degradation of polysaccharides:Energy Metabolism:Amino Acid Metabolism:Metabolism of Other Amino Acids:Metabolism of Cofactors and Vitamins:Xenobiotics Biodegradation and Metabolism:Metabolism:Metabolism:Global:Electron transport:Biosynthesis and degradation of polysaccharides:DNA replication, recombination, and repair:Carbohydrates, organic alcohols, and acids:Cations and iron carrying compounds:DNA transformation:Chlorophyll and bacteriochlorphyll:Energy metabolism:DNA metabolism:Transport and binding proteins:Cellular processes:Biosynthesis of cofactors, prosthetic groups, and carriers:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Carbohydrate Metabolism:Energy Metabolism:Amino Acid Metabolism:Metabolism of Other Amino Acids:Metabolism of Cofactors and Vitamins:Xenobiotics Biodegradation and Metabolism:Global:Metabolism:Energy metabolism:Electron transport:Carbohydrate Metabolism:DNA metabolism:DNA replication, recombination, and repair:Transport and binding proteins:Carbohydrates, organic alcohols, and acids:Cations and iron carrying compounds:Cellular processes:DNA transformation:Biosynthesis of cofactors, prosthetic groups, and carriers:Chlorophyll and bacteriochlorphyll:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized" 122 "Energy production and conversion:Energy production and conversion:Histidinol dehydrogenase:Peptide methionine sulfoxide reductase:Predicted Zn-dependent proteases and their inactivated homologs:Predicted enzyme with a TIM-barrel fold:Ribosomal protein S6:Glycosyltransferase:Molecular chaperone:Biotin synthase and related enzymes:Aspartate carbamoyltransferase, catalytic chain:Serine/threonine protein phosphatase:Uncharacterized protein conserved in bacteria:Predicted integral membrane protein:FOG: CheY-like receiver:Uncharacterized homolog of plant Iojap protein:Peroxiredoxin:Fatty-acid desaturase:Predicted phosphohydrolases:Uncharacterized conserved protein:Cytochrome c, mono- and diheme variants:3-methyladenine DNA glycosylase:ATP:corrinoid adenosyltransferase:Tfp pilus assembly protein PilF:ATP adenylyltransferase (5',5'''-P-1,P-4-tetraphosphate phosphorylase II):L-asparaginase II:Amino acid transport and metabolism:Amino acid transport and metabolism:Nucleotide transport and metabolism:Nucleotide transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Replication, recombination and repair:Replication, recombination and repair:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Cell motility:Cell motility:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Purine metabolism:Pyrimidine metabolism:Alanine aspartate and glutamate metabolism:Histidine metabolism:Cyanoamino acid metabolism:Biotin metabolism:Porphyrin and chlorophyll metabolism:Nitrogen metabolism:Biosynthesis of unsaturated fatty acids:Metabolic pathways:Biosynthesis of secondary metabolites:Two-component system:Ribosome:RNA degradation:RNA polymerase:Base excision repair:General function prediction only:General function prediction only:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:TIGR00044:hisD:iojap_ybeB:DNA_YbaB_EbfC:S6:msrA:bioB:3mg:asp_carb_tr:cobA:prok_dnaK:Intracellular trafficking, secretion, and vesicular transport:Intracellular trafficking, secretion, and vesicular transport:Pyrimidine ribonucleotide biosynthesis:Lipid Metabolism:Nucleotide Metabolism:Amino Acid Metabolism:Metabolism of Other Amino Acids:Metabolism of Cofactors and Vitamins:Transcription:Translation:Folding Sorting and Degradation:Replication and Repair:Signal Transduction:Metabolism:Metabolism:Genetic Information Processing:Environmental Information Processing:Global:Pyrimidine ribonucleotide biosynthesis:DNA replication, recombination, and repair:Ribosomal proteins: synthesis and modification:Protein folding and stabilization:Adaptations to atypical conditions:Enzymes of unknown specificity:General:Histidine family:Biotin:Heme, porphyrin, and cobalamin:Purines, pyrimidines, nucleosides, and nucleotides:DNA metabolism:Protein synthesis:Protein fate:Cellular processes:Unknown function:Amino acid biosynthesis:Biosynthesis of cofactors, prosthetic groups, and carriers:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Energy Metabolism:Lipid Metabolism:Nucleotide Metabolism:Amino Acid Metabolism:Metabolism of Other Amino Acids:Metabolism of Cofactors and Vitamins:Genetic Information Processing:Transcription:Translation:Folding Sorting and Degradation:Replication and Repair:Environmental Information Processing:Signal Transduction:Global:Metabolism:Purines, pyrimidines, nucleosides, and nucleotides:Energy Metabolism:DNA metabolism:DNA replication, recombination, and repair:Protein synthesis:Ribosomal proteins: synthesis and modification:Protein fate:Protein folding and stabilization:Cellular processes:Adaptations to atypical conditions:Unknown function:Enzymes of unknown specificity:General:Amino acid biosynthesis:Histidine family:Biosynthesis of cofactors, prosthetic groups, and carriers:Biotin:Heme, porphyrin, and cobalamin:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized" 123 "Energy production and conversion:Energy production and conversion:Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase:Cation transport ATPase:K+ transport systems, NAD-binding component:Membrane carboxypeptidase (penicillin-binding protein):Membrane-fusion protein:Chromosome segregation ATPases:Transcription-repair coupling factor (superfamily II helicase):FOG: HEAT repeat:Site-specific recombinases, DNA invertase Pin homologs:Predicted flavoprotein involved in K+ transport:Glucose/sorbosone dehydrogenases:Uncharacterized protein conserved in bacteria:Cell cycle control, cell division, chromosome partitioning:Cell cycle control, cell division, chromosome partitioning:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Thiamine metabolism:Metabolic pathways:Nucleotide excision repair:Function unknown:Function unknown:HMP-P_kinase:mfd:ATPase_P-type:RND_mfp:PBP_1a_fam:SMC_prok_B:MSMEG_0569_nitr:DNA metabolism:DNA replication, recombination, and repair:Chromosome-associated proteins:Transport and binding proteins:Unknown substrate:Biosynthesis of cofactors, prosthetic groups, and carriers:Thiamine:Cell envelope:Biosynthesis and degradation of murein sacculus and peptidoglycan:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Genetic Information Processing:Metabolism of Cofactors and Vitamins:Metabolism:Poorly characterized:Metabolism:Cellular processes and signaling:Information storage and processing:Cell envelope:Biosynthesis of cofactors, prosthetic groups, and carriers:Transport and binding proteins:DNA metabolism:Biosynthesis and degradation of murein sacculus and peptidoglycan:Thiamine:Unknown substrate:Chromosome-associated proteins:DNA replication, recombination, and repair:Global:Genetic Information Processing:Metabolism:Metabolism:Metabolism:Replication and Repair:Global:Replication and Repair:Metabolism of Cofactors and Vitamins" 124 "5-formyltetrahydrofolate cyclo-ligase:ABC-type branched-chain amino acid transport systems, ATPase component:Acetyltransferases:Serine/threonine protein kinase:Pseudouridylate synthases, 23S RNA-specific:DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32):Cytosine/adenosine deaminases:cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases:Membrane carboxypeptidase (penicillin-binding protein):Predicted transcriptional regulators:UDP-N-acetylmuramate dehydrogenase:Cation/multidrug efflux pump:ABC-type sugar transport systems, permease components:Primosomal protein N' (replication factor Y) - superfamily II helicase:Transcriptional regulator:Dihydroneopterin aldolase:Uncharacterized conserved protein:Uncharacterized conserved protein:Multisubunit Na+/H+ antiporter, MnhB subunit:Methylase involved in ubiquinone/menaquinone biosynthesis:Sporulation protein and related proteins:Uncharacterized protein conserved in bacteria:Putative N-acetylmannosamine-6-phosphate epimerase:Hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA:Cell cycle control, cell division, chromosome partitioning:Cell cycle control, cell division, chromosome partitioning:Amino acid transport and metabolism:Amino acid transport and metabolism:Nucleotide transport and metabolism:Nucleotide transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Amino sugar and nucleotide sugar metabolism:Peptidoglycan biosynthesis:One carbon pool by folate:Folate biosynthesis:Metabolic pathways:ABC transporters:RNA polymerase:Homologous recombination:General function prediction only:General function prediction only:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:rluA_subfam:murB:lytR_cpsA_psr:folB:priA:SpoIID_LytB:MTHFS_bact:sigma70-ECF:TIGR03032:Defense mechanisms:Defense mechanisms:Other:DNA metabolism:DNA replication, recombination, and repair:Protein synthesis:tRNA and rRNA base modification:Hypothetical proteins:Conserved:Unknown function:General:Biosynthesis of cofactors, prosthetic groups, and carriers:Folic acid:Cell envelope:Biosynthesis and degradation of murein sacculus and peptidoglycan:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Transcription:Genetic Information Processing:Metabolism of Cofactors and Vitamins:Glycan Biosynthesis and Metabolism:Carbohydrate Metabolism:Metabolism:Poorly characterized:Metabolism:Cellular processes and signaling:Information storage and processing:Cell envelope:Biosynthesis of cofactors, prosthetic groups, and carriers:Unknown function:Hypothetical proteins:Protein synthesis:DNA metabolism:Regulatory functions:Central intermediary metabolism:Biosynthesis and degradation of murein sacculus and peptidoglycan:Folic acid:General:Conserved:tRNA and rRNA base modification:DNA replication, recombination, and repair:Other:One-carbon metabolism:Global:Environmental Information Processing:Genetic Information Processing:Metabolism:Metabolism:Membrane Transport:Replication and Repair:Transcription:Metabolism of Cofactors and Vitamins:Membrane Transport:Glycan Biosynthesis and Metabolism:Global:Metabolism:Environmental Information Processing:Replication and Repair:Carbohydrate Metabolism:Central intermediary metabolism:One-carbon metabolism:Regulatory functions" 125 "Energy production and conversion:Energy production and conversion:Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase:Delta-aminolevulinic acid dehydratase:Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains:Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily):NADH:ubiquinone oxidoreductase 49 kD subunit 7:Nitroreductase:Uncharacterized protein involved in formation of curli polymers:Beta-propeller domains of methanol dehydrogenase type:ABC-type polysaccharide/polyol phosphate export systems, permease component:Molybdopterin converting factor, small subunit:2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase:Uncharacterized conserved protein:Carbon dioxide concentrating mechanism/carboxysome shell protein:Nucleotide transport and metabolism:Nucleotide transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Oxidative phosphorylation:Purine metabolism:Alanine aspartate and glutamate metabolism:Amino sugar and nucleotide sugar metabolism:Porphyrin and chlorophyll metabolism:Metabolic pathways:Biosynthesis of secondary metabolites:ABC transporters:Secondary metabolites biosynthesis, transport and catabolism:Secondary metabolites biosynthesis, transport and catabolism:General function prediction only:General function prediction only:Function unknown:Function unknown:glmS:purE:moaD_arch:NuoD:BchM-ChlM:Metabolism:Poorly characterized:Central intermediary metabolism:Energy Metabolism:Nucleotide Metabolism:Amino Acid Metabolism:Metabolism of Cofactors and Vitamins:Membrane Transport:Metabolism:Metabolism:Environmental Information Processing:Global:Amino sugars:Electron transport:Purine ribonucleotide biosynthesis:Molybdopterin:Chlorophyll and bacteriochlorphyll:Central intermediary metabolism:Energy metabolism:Purines, pyrimidines, nucleosides, and nucleotides:Biosynthesis of cofactors, prosthetic groups, and carriers:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Carbohydrate Metabolism:Energy Metabolism:Nucleotide Metabolism:Amino Acid Metabolism:Metabolism of Cofactors and Vitamins:Environmental Information Processing:Membrane Transport:Global:Metabolism:Carbohydrate Metabolism:Amino sugars:Energy metabolism:Electron transport:Purines, pyrimidines, nucleosides, and nucleotides:Purine ribonucleotide biosynthesis:Biosynthesis of cofactors, prosthetic groups, and carriers:Molybdopterin:Chlorophyll and bacteriochlorphyll:Cellular processes and signaling" 126 "Chromatin structure and dynamics:Chromatin structure and dynamics:Deacetylases, including yeast histone deacetylase and acetoin utilization protein:Glycosyltransferase:ATPase involved in DNA repair:Molybdopterin biosynthesis enzymes:rRNA methylase:Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily):Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain:Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis):Cation/multidrug efflux pump:Membrane-fusion protein:Metal-dependent amidase/aminoacylase/carboxypeptidase:N2,N2-dimethylguanosine tRNA methyltransferase:Glucose/sorbosone dehydrogenases:Methylase involved in ubiquinone/menaquinone biosynthesis:Signal transduction histidine kinase regulating citrate/malate metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Ubiquinone and other terpenoid-quinone biosynthesis:Arginine and proline metabolism:Metabolic pathways:Biosynthesis of secondary metabolites:Two-component system:Secondary metabolites biosynthesis, transport and catabolism:Secondary metabolites biosynthesis, transport and catabolism:General function prediction only:General function prediction only:Signal transduction mechanisms:Signal transduction mechanisms:rRNA_methyl_1:molyb_syn:RNAse_H_YqgF:recN:RND_mfp:amidohydrolases:Defense mechanisms:Defense mechanisms:Protein synthesis:tRNA and rRNA base modification:Protein fate:Degradation of proteins, peptides, and glycopeptides:Transport and binding proteins:Unknown substrate:Unknown function:General:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Environmental Information Processing:Metabolism of Cofactors and Vitamins:Amino Acid Metabolism:Metabolism:Poorly characterized:Metabolism:Cellular processes and signaling:Information storage and processing:Unknown function:Transport and binding proteins:Protein fate:Protein synthesis:DNA metabolism:General:Unknown substrate:Degradation of proteins, peptides, and glycopeptides:tRNA and rRNA base modification:DNA replication, recombination, and repair:Global:Environmental Information Processing:Metabolism:Metabolism:Signal Transduction:Metabolism:Metabolism of Cofactors and Vitamins:Global:Signal Transduction:Amino Acid Metabolism:DNA metabolism:DNA replication, recombination, and repair" 127 "Glucose-6-phosphate isomerase:1-acyl-sn-glycerol-3-phosphate acyltransferase:Catalase (peroxidase I):FOG: CBS domain:ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains):Large-conductance mechanosensitive channel:K+-transporting ATPase, c chain:Uncharacterized protein conserved in bacteria:O-acetylhomoserine sulfhydrylase:Phosphoketolase:Amino acid transport and metabolism:Amino acid transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Replication, recombination and repair:Replication, recombination and repair:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Glycolysis / Gluconeogenesis:Pentose phosphate pathway:Cysteine and methionine metabolism:Phenylalanine metabolism:Tryptophan metabolism:Starch and sucrose metabolism:Amino sugar and nucleotide sugar metabolism:Methane metabolism:Carbon fixation in photosynthetic organisms:Metabolic pathways:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Two-component system:General function prediction only:General function prediction only:Function unknown:Function unknown:cat_per_HPI:mscL:kdpC:OAH_OAS_sulfhy:Global:Metabolism:Environmental Information Processing:Amino Acid Metabolism:Energy Metabolism:Carbohydrate Metabolism:Metabolism:Carbohydrate Metabolism:Transport and binding proteins:Cations and iron carrying compounds:Cellular processes:Detoxification:Adaptations to atypical conditions:Amino acid biosynthesis:Serine family:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Poorly characterized:Metabolism:Cellular processes and signaling:Information storage and processing:Amino acid biosynthesis:Cellular processes:Transport and binding proteins:Serine family:Adaptations to atypical conditions:Detoxification:Cations and iron carrying compounds:Global:Environmental Information Processing:Metabolism:Metabolism:Signal Transduction:Amino Acid Metabolism:Signal Transduction:Energy Metabolism" 128 "Translation elongation factors (GTPases):Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Information storage and processing:Information storage and processing" 129 "Ribosomal protein S12:Ribosomal protein S10:Stress-induced morphogen (activity unknown):Glutaredoxin-related protein:Ribosomal protein L19:Homoserine dehydrogenase:Phosphoribosylpyrophosphate synthetase:DnaJ-class molecular chaperone with C-terminal Zn finger domain:GMP synthase, PP-ATPase domain/subunit:Ribosomal protein S4 and related proteins:Predicted membrane protein:Amino acid transport and metabolism:Amino acid transport and metabolism:Nucleotide transport and metabolism:Nucleotide transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Pentose phosphate pathway:Photosynthesis:Purine metabolism:Glycine serine and threonine metabolism:Cysteine and methionine metabolism:Lysine biosynthesis:Metabolic pathways:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Ribosome:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:TIGR00365:guaA_Cterm:rpsL_bact:rpsD_bact:rplS_bact:rpsJ_bact:cytb6/f_IV:ribP_PPkin:DnaJ_bact:Metabolism:Energy Metabolism:Nucleotide Metabolism:Amino Acid Metabolism:Translation:Metabolism:Metabolism:Genetic Information Processing:Global:Electron transport:Photosynthesis:Purine ribonucleotide biosynthesis:Ribosomal proteins: synthesis and modification:Energy metabolism:Purines, pyrimidines, nucleosides, and nucleotides:Protein synthesis:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Carbohydrate Metabolism:Energy Metabolism:Nucleotide Metabolism:Amino Acid Metabolism:Genetic Information Processing:Translation:Global:Carbohydrate Metabolism:Energy metabolism:Electron transport:Photosynthesis:Purines, pyrimidines, nucleosides, and nucleotides:Purine ribonucleotide biosynthesis:Protein synthesis:Ribosomal proteins: synthesis and modification:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized" 130 "Energy production and conversion:Energy production and conversion:Protein-tyrosine-phosphatase:Adenylate kinase and related kinases:DNA polymerase sliding clamp subunit (PCNA homolog):Ferredoxin:Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain:3-dehydroquinate dehydratase II:UDP-N-acetylmuramate-alanine ligase:FOG: CheY-like receiver:Glutamate racemase:Predicted thioesterase:Phosphomannomutase:Outer membrane protein:Multidrug resistance efflux pump:Uncharacterized protein, similar to the N-terminal domain of Lon protease:Uncharacterized protein conserved in bacteria:Amino acid transport and metabolism:Amino acid transport and metabolism:Nucleotide transport and metabolism:Nucleotide transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Ubiquinone and other terpenoid-quinone biosynthesis:Photosynthesis:Purine metabolism:Pyrimidine metabolism:Phenylalanine tyrosine and tryptophan biosynthesis:D-Glutamine and D-glutamate metabolism:Amino sugar and nucleotide sugar metabolism:Peptidoglycan biosynthesis:Metabolic pathways:Biosynthesis of secondary metabolites:Two-component system:DNA replication:Mismatch repair:Homologous recombination:General function prediction only:General function prediction only:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:glut_race:rlpA:dnan:murC:aroQ:glmM:type_I_hlyD:fdx_plant:Intracellular trafficking, secretion, and vesicular transport:Intracellular trafficking, secretion, and vesicular transport:Defense mechanisms:Defense mechanisms:Amino acid biosynthesis:Central intermediary metabolism:Amino sugars:DNA metabolism:DNA replication, recombination, and repair:Protein fate:Protein and peptide secretion and trafficking:Amino acid biosynthesis:Aromatic amino acid family:Cell envelope:Other:Biosynthesis and degradation of murein sacculus and peptidoglycan:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Protein fate:DNA metabolism:Central intermediary metabolism:Biosynthesis and degradation of murein sacculus and peptidoglycan:Other:Aromatic amino acid family:Protein and peptide secretion and trafficking:DNA replication, recombination, and repair:Amino sugars:Global:Environmental Information Processing:Genetic Information Processing:Metabolism:Metabolism:Signal Transduction:Replication and Repair:Metabolism of Cofactors and Vitamins:Glycan Biosynthesis and Metabolism:Metabolism of Other Amino Acids:Amino Acid Metabolism:Nucleotide Metabolism:Metabolism:Energy Metabolism:Carbohydrate Metabolism:Poorly characterized:Energy Metabolism:Metabolism:Nucleotide Metabolism:Cellular processes and signaling:Information storage and processing:Amino Acid Metabolism:Metabolism of Other Amino Acids:Glycan Biosynthesis and Metabolism:Metabolism of Cofactors and Vitamins:Genetic Information Processing:Replication and Repair:Carbohydrate Metabolism:Environmental Information Processing:Signal Transduction:Global:Metabolism:Cell envelope" 131 "Energy production and conversion:Energy production and conversion:Phosphoglycerate dehydrogenase and related dehydrogenases:Seryl-tRNA synthetase:Riboflavin synthase alpha chain:Predicted acid phosphatase:Enoyl-[acyl-carrier-protein] reductase (NADH):Glutathione S-transferase:Predicted permeases:ABC-type metal ion transport system, periplasmic component/surface adhesin:ADP-ribose pyrophosphatase:Predicted RNA-binding protein homologous to eukaryotic snRNP:Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase:Predicted membrane protein:SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase:Uncharacterized conserved protein, contains S4-like domain:Predicted acetamidase/formamidase:Uncharacterized conserved protein:ABC-type uncharacterized transport system, ATPase component:Amino acid transport and metabolism:Amino acid transport and metabolism:Nucleotide transport and metabolism:Nucleotide transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Fatty acid biosynthesis:Purine metabolism:Pyrimidine metabolism:Glycine serine and threonine metabolism:Histidine metabolism:Tyrosine metabolism:Selenocompound metabolism:Glutathione metabolism:Polycyclic aromatic hydrocarbon degradation:Methane metabolism:Riboflavin metabolism:Nicotinate and nicotinamide metabolism:Aminoacyl-tRNA biosynthesis:Metabolic pathways:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:General function prediction only:General function prediction only:Function unknown:Function unknown:surE:ribE:serS:rumA:PGDH:PS_II_S4:Global:Metabolism:Translation:Genetic Information Processing:Xenobiotics Biodegradation and Metabolism:Metabolism of Cofactors and Vitamins:Metabolism of Other Amino Acids:Amino Acid Metabolism:Nucleotide Metabolism:Lipid Metabolism:Energy Metabolism:Energy metabolism:Photosynthesis:Protein synthesis:tRNA aminoacylation:tRNA and rRNA base modification:Cellular processes:Adaptations to atypical conditions:Amino acid biosynthesis:Serine family:Biosynthesis of cofactors, prosthetic groups, and carriers:Riboflavin, FMN, and FAD:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Energy Metabolism:Metabolism:Poorly characterized:Metabolism:Cellular processes and signaling:Information storage and processing:Biosynthesis of cofactors, prosthetic groups, and carriers:Amino acid biosynthesis:Cellular processes:Protein synthesis:Energy metabolism:Riboflavin, FMN, and FAD:Serine family:Adaptations to atypical conditions:tRNA and rRNA base modification:tRNA aminoacylation:Photosynthesis:Global:Genetic Information Processing:Metabolism:Metabolism:Translation:Xenobiotics Biodegradation and Metabolism:Metabolism of Cofactors and Vitamins:Metabolism of Other Amino Acids:Amino Acid Metabolism:Nucleotide Metabolism:Lipid Metabolism" 132 "Energy production and conversion:Energy production and conversion:Sulfite reductase, beta subunit (hemoprotein):Nucleoside-diphosphate-sugar epimerases:Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases:ABC-type nitrate/sulfonate/bicarbonate transport system, permease component:ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components:Uncharacterized conserved protein:NADH:ubiquinone oxidoreductase subunit 6 (chain J):NADH:ubiquinone oxidoreductase subunit 1 (chain H):NADH:ubiquinone oxidoreductase subunit 4 (chain M):NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit:ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component:ABC-type Fe3+ transport system, periplasmic component:Secreted and surface protein containing fasciclin-like repeats:Uncharacterized protein conserved in bacteria:Nucleotide transport and metabolism:Nucleotide transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Oxidative phosphorylation:Photosynthesis:Amino sugar and nucleotide sugar metabolism:Glycerolipid metabolism:Nitrogen metabolism:Metabolic pathways:Microbial metabolism in diverse environments:ABC transporters:General function prediction only:General function prediction only:Function unknown:Function unknown:TIGR00278:psbA:psbD:psbC:ntrB:ntrCD:ndhF3_CO2:chpXY:NDH_I_M:CobG:Electron transport:Photosynthesis:Transport and binding proteins:Anions:Other:Hypothetical proteins:Conserved:Biosynthesis of cofactors, prosthetic groups, and carriers:Heme, porphyrin, and cobalamin:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Poorly characterized:Metabolism:Cellular processes and signaling:Biosynthesis of cofactors, prosthetic groups, and carriers:Hypothetical proteins:Transport and binding proteins:Energy metabolism:Heme, porphyrin, and cobalamin:Conserved:Other:Anions:Photosynthesis:Electron transport:Global:Environmental Information Processing:Metabolism:Metabolism:Membrane Transport:Lipid Metabolism:Environmental Information Processing:Energy Metabolism:Membrane Transport:Lipid Metabolism:Global:Metabolism:Energy Metabolism:Carbohydrate Metabolism:Carbohydrate Metabolism:Energy metabolism" 133 "Dihydroorotase and related cyclic amidohydrolases:ATPase involved in DNA repair:Glycosyltransferase:Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily):Spermidine/putrescine-binding periplasmic protein:Uncharacterized conserved protein:Arginine/lysine/ornithine decarboxylases:NaMN:DMB phosphoribosyltransferase:Precorrin-6B methylase 1:Uncharacterized FAD-dependent dehydrogenases:Phage protein D:ABC-type sugar transport systems, ATPase components:Cystathionine beta-lyase family protein involved in aluminum resistance:Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain:Amino acid transport and metabolism:Amino acid transport and metabolism:Nucleotide transport and metabolism:Nucleotide transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Replication, recombination and repair:Replication, recombination and repair:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Pyrimidine metabolism:Lysine degradation:Porphyrin and chlorophyll metabolism:Metabolic pathways:Biosynthesis of secondary metabolites:General function prediction only:General function prediction only:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:sensory_box:TIGR00299:TIGR00303:pyrC_multi:CbiE:Conserved:Amino Acid Metabolism:Metabolism of Cofactors and Vitamins:Metabolism:Metabolism:Global:Pyrimidine ribonucleotide biosynthesis:Small molecule interactions:Conserved:Purines, pyrimidines, nucleosides, and nucleotides:Regulatory functions:Hypothetical proteins:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Nucleotide Metabolism:Amino Acid Metabolism:Metabolism of Cofactors and Vitamins:Global:Metabolism:Purines, pyrimidines, nucleosides, and nucleotides:Pyrimidine ribonucleotide biosynthesis:Regulatory functions:Small molecule interactions:Hypothetical proteins:Nucleotide Metabolism:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized" 134 "Zn-dependent hydrolases, including glyoxylases:ATPase involved in DNA repair:rRNA methylase:Cytosine/adenosine deaminases:Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily):5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases:N2,N2-dimethylguanosine tRNA methyltransferase:Pyrimidine reductase, riboflavin biosynthesis:D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4):Predicted protein-tyrosine phosphatase:Antitoxin of toxin-antitoxin stability system:Cell cycle control, cell division, chromosome partitioning:Cell cycle control, cell division, chromosome partitioning:Nucleotide transport and metabolism:Nucleotide transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Replication, recombination and repair:Replication, recombination and repair:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Peptidoglycan biosynthesis:Pyruvate metabolism:Riboflavin metabolism:Metabolic pathways:General function prediction only:General function prediction only:Signal transduction mechanisms:Signal transduction mechanisms:rRNA_methyl_1:recN:PBP4:phd_fam:GSH_gloB:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Cellular processes:Glycan Biosynthesis and Metabolism:Metabolism of Cofactors and Vitamins:Metabolism:Metabolism:Global:DNA replication, recombination, and repair:tRNA and rRNA base modification:Detoxification:Other:Biosynthesis and degradation of murein sacculus and peptidoglycan:DNA metabolism:Protein synthesis:Cellular processes:Mobile and extrachromosomal element functions:Cell envelope:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Carbohydrate Metabolism:Glycan Biosynthesis and Metabolism:Metabolism of Cofactors and Vitamins:Global:Metabolism:DNA metabolism:DNA replication, recombination, and repair:Protein synthesis:tRNA and rRNA base modification:Carbohydrate Metabolism:Detoxification:Mobile and extrachromosomal element functions:Other:Cell envelope:Biosynthesis and degradation of murein sacculus and peptidoglycan" 135 "Cell division GTPase:Nucleotidyltransferase/DNA polymerase involved in DNA repair:Kef-type K+ transport systems, membrane components:6-pyruvoyl-tetrahydropterin synthase:Bacterial nucleoid DNA-binding protein:Pterin-4a-carbinolamine dehydratase:Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain:Predicted integral membrane protein:Cell cycle control, cell division, chromosome partitioning:Cell cycle control, cell division, chromosome partitioning:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Replication, recombination and repair:Replication, recombination and repair:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Folate biosynthesis:Metabolic pathways:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:ftsZ:sensory_box:thioredoxin:Cellular processes and signaling:Metabolism:Poorly characterized:Small molecule interactions:Metabolism:Metabolism:Global:Electron transport:Small molecule interactions:Cell division:Energy metabolism:Regulatory functions:Cellular processes:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Metabolism of Cofactors and Vitamins:Global:Metabolism:Energy metabolism:Electron transport:Regulatory functions:Metabolism of Cofactors and Vitamins:Cellular processes:Cell division:Information storage and processing" 136 "Tryptophan synthase beta chain:5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase:Transcription elongation factor:Zn-dependent hydrolases, including glyoxylases:Uncharacterized protein conserved in bacteria:Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes:Uracil-DNA glycosylase:Predicted protease with the C-terminal PDZ domain:Amino acid transport and metabolism:Amino acid transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Glycine serine and threonine metabolism:Phenylalanine tyrosine and tryptophan biosynthesis:One carbon pool by folate:Carbon fixation pathways in prokaryotes:Thiamine metabolism:Metabolic pathways:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Sulfur relay system:General function prediction only:General function prediction only:Function unknown:Function unknown:trpB:UDG_fam4:NusA:Genetic Information Processing:Folding Sorting and Degradation:Amino Acid Metabolism:Global:Metabolism:Energy Metabolism:Metabolism:Poorly characterized:Metabolism:Energy Metabolism:DNA metabolism:DNA replication, recombination, and repair:Transcription:Transcription factors:Amino acid biosynthesis:Aromatic amino acid family:Information storage and processing:Metabolism:Poorly characterized:Information storage and processing:Amino acid biosynthesis:Transcription:DNA metabolism:Aromatic amino acid family:Transcription factors:DNA replication, recombination, and repair:Global:Genetic Information Processing:Metabolism:Metabolism:Folding Sorting and Degradation:Metabolism of Cofactors and Vitamins:Metabolism of Cofactors and Vitamins:Amino Acid Metabolism" 137 "Energy production and conversion:Energy production and conversion:Cysteine synthase:Glucan phosphorylase:Transaldolase:Translation elongation factors (GTPases):DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32):DNA-directed RNA polymerase specialized sigma subunit:Nitrogenase molybdenum-iron protein, alpha and beta chains:Uncharacterized conserved protein:Predicted dienelactone hydrolase:Amino acid transport and metabolism:Amino acid transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:Pentose phosphate pathway:Cysteine and methionine metabolism:Selenocompound metabolism:Starch and sucrose metabolism:Porphyrin and chlorophyll metabolism:Sulfur metabolism:Metabolic pathways:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:RNA polymerase:General function prediction only:General function prediction only:Function unknown:Function unknown:talAB:cysKM:DPOR_BchB:P_ylase:RpoD_Cterm:sigma70-ECF:Metabolism of Cofactors and Vitamins:Carbohydrate Metabolism:Genetic Information Processing:Transcription:Metabolism:Global:Metabolism:Poorly characterized:Metabolism:Information storage and processing:Biosynthesis of cofactors, prosthetic groups, and carriers:Amino acid biosynthesis:Carbohydrate Metabolism:Energy metabolism:Pentose phosphate pathway:Biosynthesis and degradation of polysaccharides:Transcription:Transcription factors:Amino acid biosynthesis:Serine family:Biosynthesis of cofactors, prosthetic groups, and carriers:Chlorophyll and bacteriochlorphyll:Information storage and processing:Metabolism:Poorly characterized:Transcription:Energy metabolism:Chlorophyll and bacteriochlorphyll:Serine family:Transcription factors:Biosynthesis and degradation of polysaccharides:Pentose phosphate pathway:Global:Genetic Information Processing:Metabolism:Metabolism:Transcription:Metabolism of Cofactors and Vitamins:Metabolism of Other Amino Acids:Amino Acid Metabolism:Amino Acid Metabolism:Energy Metabolism:Metabolism of Other Amino Acids:Energy Metabolism" 138 "Adenylosuccinate lyase:Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase:Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain:Anthranilate/para-aminobenzoate synthases component I:Predicted TIM-barrel enzyme:Aspartate/tyrosine/aromatic aminotransferase:Glycosyltransferase:Aspartokinases:RNase P protein component:2-methylthioadenine synthetase:Glycyl-tRNA synthetase, alpha subunit:Acetyl-CoA carboxylase beta subunit:dTDP-4-dehydrorhamnose reductase:Predicted RNA-binding protein:Short-chain alcohol dehydrogenase of unknown specificity:Amino acid transport and metabolism:Amino acid transport and metabolism:Nucleotide transport and metabolism:Nucleotide transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Fatty acid biosynthesis:Purine metabolism:Alanine aspartate and glutamate metabolism:Glycine serine and threonine metabolism:Cysteine and methionine metabolism:Lysine biosynthesis:Arginine and proline metabolism:Tyrosine metabolism:Phenylalanine metabolism:Phenylalanine tyrosine and tryptophan biosynthesis:Novobiocin biosynthesis:Pyruvate metabolism:Propanoate metabolism:Carbon fixation in photosynthetic organisms:Carbon fixation pathways in prokaryotes:Aminoacyl-tRNA biosynthesis:Metabolic pathways:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:General function prediction only:General function prediction only:TIGR00089:rnpA:thylakoid_BtpA:glyQ:accD:asp_kin_monofn:purB:purE:FGAM_synth_II:Purines, pyrimidines, nucleosides, and nucleotides:Purine ribonucleotide biosynthesis:Transcription:RNA processing:Protein synthesis:tRNA aminoacylation:Protein fate:Protein folding and stabilization:Amino acid biosynthesis:Aspartate family:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Protein fate:Protein synthesis:Transcription:Purines, pyrimidines, nucleosides, and nucleotides:Fatty acid and phospholipid metabolism:Aspartate family:Protein folding and stabilization:tRNA aminoacylation:RNA processing:Purine ribonucleotide biosynthesis:Biosynthesis:Global:Genetic Information Processing:Metabolism:Metabolism:Translation:Biosynthesis of Other Secondary Metabolites:Amino Acid Metabolism:Nucleotide Metabolism:Lipid Metabolism:Energy Metabolism:Energy Metabolism:Lipid Metabolism:Nucleotide Metabolism:Amino Acid Metabolism:Carbohydrate Metabolism:Metabolism:Poorly characterized:Metabolism:Cellular processes and signaling:Information storage and processing:Amino acid biosynthesis:Biosynthesis of Other Secondary Metabolites:Carbohydrate Metabolism:Genetic Information Processing:Translation:Global:Metabolism:Fatty acid and phospholipid metabolism:Biosynthesis" 139 "Putative translation factor (SUA5):Predicted sugar kinase:Ribosomal protein S14:Protoheme ferro-lyase (ferrochelatase):Translation initiation factor 3 (IF-3):Acetyltransferases:Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain:ATPases involved in chromosome partitioning:Multidrug resistance efflux pump:Chorismate mutase:Cell cycle control, cell division, chromosome partitioning:Cell cycle control, cell division, chromosome partitioning:Amino acid transport and metabolism:Amino acid transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:Oxidative phosphorylation:Photosynthesis:Phenylalanine tyrosine and tryptophan biosynthesis:Nicotinate and nicotinamide metabolism:Porphyrin and chlorophyll metabolism:Metabolic pathways:Biosynthesis of secondary metabolites:Two-component system:Ribosome:General function prediction only:General function prediction only:Signal transduction mechanisms:Signal transduction mechanisms:S21p:hemH:infC:CM_mono_aroH:type_I_hlyD:PS_II_psbM:PS_II_psb28:Defense mechanisms:Defense mechanisms:Translation:Energy Metabolism:Environmental Information Processing:Signal Transduction:Metabolism:Global:Metabolism:Poorly characterized:Metabolism:Cellular processes and signaling:Information storage and processing:Biosynthesis of cofactors, prosthetic groups, and carriers:Amino acid biosynthesis:Energy Metabolism:Energy metabolism:Photosynthesis:Protein synthesis:Ribosomal proteins: synthesis and modification:Translation factors:Protein fate:Protein and peptide secretion and trafficking:Amino acid biosynthesis:Aromatic amino acid family:Biosynthesis of cofactors, prosthetic groups, and carriers:Heme, porphyrin, and cobalamin:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Protein fate:Protein synthesis:Energy metabolism:Heme, porphyrin, and cobalamin:Aromatic amino acid family:Protein and peptide secretion and trafficking:Translation factors:Ribosomal proteins: synthesis and modification:Photosynthesis:Global:Environmental Information Processing:Genetic Information Processing:Metabolism:Metabolism:Signal Transduction:Translation:Metabolism of Cofactors and Vitamins:Metabolism of Cofactors and Vitamins:Amino Acid Metabolism:Amino Acid Metabolism:Genetic Information Processing" 140 "Ribonuclease HII:Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase):GTP cyclohydrolase I:Predicted epimerase, PhzC/PhzF homolog:Thiamine biosynthesis protein ThiC:Peroxiredoxin:Serine/threonine protein kinase:FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor):Acetylglutamate kinase:Exoribonuclease R:Organic radical activating enzymes:Glutathione S-transferase:Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain:Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis:ABC-type multidrug transport system, ATPase and permease components:ATP-dependent protease Clp, ATPase subunit:Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain:Ribonucleases G and E:Uncharacterized enzyme of thiazole biosynthesis:Uncharacterized conserved protein:Uncharacterized protein conserved in bacteria:Amino acid transport and metabolism:Amino acid transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Lysine biosynthesis:Arginine and proline metabolism:Glutathione metabolism:Thiamine metabolism:Folate biosynthesis:Terpenoid backbone biosynthesis:Carotenoid biosynthesis:Metabolic pathways:Biosynthesis of secondary metabolites:Two-component system:RNA degradation:DNA replication:General function prediction only:General function prediction only:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:folE:tig:thiC:clpX:ispG_gcpE:PhzF_family:RNaseEG:argB:glut_syn:phytoene_desat:Defense mechanisms:Defense mechanisms:Protein fate:Metabolism of Other Amino Acids:Metabolism of Cofactors and Vitamins:Metabolism of Terpenoids and Polyketides:Folding Sorting and Degradation:Replication and Repair:Signal Transduction:Metabolism:Metabolism:Genetic Information Processing:Environmental Information Processing:Global:Degradation of RNA:Protein folding and stabilization:Degradation of proteins, peptides, and glycopeptides:Toxin production and resistance:Glutamate family:Other:Folic acid:Glutathione and analogs:Thiamine:Transcription:Protein fate:Cellular processes:Amino acid biosynthesis:Biosynthesis of cofactors, prosthetic groups, and carriers:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Amino Acid Metabolism:Metabolism of Other Amino Acids:Metabolism of Cofactors and Vitamins:Metabolism of Terpenoids and Polyketides:Genetic Information Processing:Folding Sorting and Degradation:Replication and Repair:Environmental Information Processing:Signal Transduction:Global:Metabolism:Transcription:Degradation of RNA:Amino Acid Metabolism:Protein folding and stabilization:Degradation of proteins, peptides, and glycopeptides:Cellular processes:Toxin production and resistance:Amino acid biosynthesis:Glutamate family:Biosynthesis of cofactors, prosthetic groups, and carriers:Other:Folic acid:Glutathione and analogs:Thiamine:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized" 141 "Alanyl-tRNA synthetase:Ribosomal protein S7:Ketol-acid reductoisomerase:3-phosphoglycerate kinase:Enolase:Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase:Aspartyl-tRNA synthetase:Uridylate kinase:Acetyl-CoA carboxylase alpha subunit:Mg-chelatase subunit ChlI:Predicted Zn-dependent hydrolases of the beta-lactamase fold:Predicted dehydrogenase:Amino acid transport and metabolism:Amino acid transport and metabolism:Nucleotide transport and metabolism:Nucleotide transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Glycolysis / Gluconeogenesis:Fatty acid biosynthesis:Purine metabolism:Pyrimidine metabolism:Valine leucine and isoleucine biosynthesis:Pyruvate metabolism:Propanoate metabolism:Methane metabolism:Carbon fixation in photosynthetic organisms:Carbon fixation pathways in prokaryotes:Pantothenate and CoA biosynthesis:Porphyrin and chlorophyll metabolism:Aminoacyl-tRNA biosynthesis:Metabolic pathways:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Ribosome:RNA degradation:General function prediction only:General function prediction only:purC:alaS:aspS_bact:ilvC:accA:rpsG_bact:eno:BchI-ChlI:pyrH_bact:PS_II_psb29:AcACP_reductase:Ald_deCOase:Energy metabolism:Genetic Information Processing:Translation:Carbohydrate Metabolism:Central intermediary metabolism:Folding Sorting and Degradation:Global:Metabolism:Chlorophyll and bacteriochlorphyll:Pyruvate family:Ribosomal proteins: synthesis and modification:Central intermediary metabolism:Other:Energy metabolism:Glycolysis/gluconeogenesis:Photosynthesis:Fatty acid and phospholipid metabolism:Biosynthesis:Purines, pyrimidines, nucleosides, and nucleotides:Nucleotide and nucleoside interconversions:Purine ribonucleotide biosynthesis:Protein synthesis:tRNA aminoacylation:Ribosomal proteins: synthesis and modification:Amino acid biosynthesis:Pyruvate family:Biosynthesis of cofactors, prosthetic groups, and carriers:Chlorophyll and bacteriochlorphyll:Information storage and processing:Metabolism:Poorly characterized:tRNA aminoacylation:Purine ribonucleotide biosynthesis:Nucleotide and nucleoside interconversions:Biosynthesis:Photosynthesis:Glycolysis/gluconeogenesis:Other:Global:Genetic Information Processing:Metabolism:Metabolism:Folding Sorting and Degradation:Translation:Metabolism of Cofactors and Vitamins:Amino Acid Metabolism:Nucleotide Metabolism:Lipid Metabolism:Carbohydrate Metabolism:Energy Metabolism:Metabolism:Poorly characterized:Energy Metabolism:Metabolism:Information storage and processing:Lipid Metabolism:Biosynthesis of cofactors, prosthetic groups, and carriers:Nucleotide Metabolism:Amino acid biosynthesis:Protein synthesis:Amino Acid Metabolism:Purines, pyrimidines, nucleosides, and nucleotides:Metabolism of Cofactors and Vitamins:Fatty acid and phospholipid metabolism" 142 "tRNA-dihydrouridine synthase:Deoxyribodipyrimidine photolyase:K+ transport systems, NAD-binding component:Rhodanese-related sulfurtransferase:Predicted permeases:DNA or RNA helicases of superfamily II:ABC-type Mn2+/Zn2+ transport systems, permease components:Bacteriophage tail assembly protein:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:General function prediction only:General function prediction only:nifR3_yhdG:photolyase_8HDF:General:General:DNA metabolism:Unknown function:Information storage and processing:Metabolism:Poorly characterized:DNA metabolism:DNA replication, recombination, and repair:Unknown function:DNA replication, recombination, and repair:Information storage and processing:Metabolism:Poorly characterized" 143 "Energy production and conversion:Energy production and conversion:Arginyl-tRNA synthetase:NhaP-type Na+/H+ and K+/H+ antiporters:Phosphoribosylamine-glycine ligase:Tryptophanyl-tRNA synthetase:(acyl-carrier-protein) S-malonyltransferase:Panthothenate synthetase:Fatty acid/phospholipid biosynthesis enzyme:Phosphatidylglycerophosphate synthase:Dehydrogenases (flavoproteins):N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains):Uncharacterized conserved protein:Uroporphyrinogen-III synthase:Predicted Rossmann fold nucleotide-binding protein:ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain:Uncharacterized protein conserved in bacteria:Nucleotide transport and metabolism:Nucleotide transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Fatty acid biosynthesis:Purine metabolism:Pyrimidine metabolism:Tryptophan metabolism:beta-Alanine metabolism:Amino sugar and nucleotide sugar metabolism:Glycerolipid metabolism:Glycerophospholipid metabolism:Pantothenate and CoA biosynthesis:Porphyrin and chlorophyll metabolism:Aminoacyl-tRNA biosynthesis:Metabolic pathways:Biosynthesis of secondary metabolites:General function prediction only:General function prediction only:Function unknown:Function unknown:cmk:fabD:plsX:trpS:argS:pgsA:purD:glmU:GG-red-SF:Defense mechanisms:Defense mechanisms:Metabolism:Metabolism of Cofactors and Vitamins:Metabolism of Other Amino Acids:Amino Acid Metabolism:Nucleotide Metabolism:Lipid Metabolism:Carbohydrate Metabolism:Metabolism:Poorly characterized:Metabolism:Carbohydrate Metabolism:Central intermediary metabolism:Amino sugars:Fatty acid and phospholipid metabolism:Biosynthesis:Purines, pyrimidines, nucleosides, and nucleotides:Nucleotide and nucleoside interconversions:Purine ribonucleotide biosynthesis:Protein synthesis:tRNA aminoacylation:Biosynthesis of cofactors, prosthetic groups, and carriers:Chlorophyll and bacteriochlorphyll:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Cellular processes and signaling:Information storage and processing:Biosynthesis of cofactors, prosthetic groups, and carriers:Protein synthesis:Purines, pyrimidines, nucleosides, and nucleotides:Fatty acid and phospholipid metabolism:Central intermediary metabolism:Chlorophyll and bacteriochlorphyll:tRNA aminoacylation:Purine ribonucleotide biosynthesis:Nucleotide and nucleoside interconversions:Biosynthesis:Amino sugars:Global:Genetic Information Processing:Metabolism:Metabolism:Translation:Metabolism of Cofactors and Vitamins:Metabolism of Other Amino Acids:Amino Acid Metabolism:Nucleotide Metabolism:Translation:Lipid Metabolism:Genetic Information Processing:Global" 144 "Translation initiation factor 1 (eIF-1/SUI1) and related proteins:5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase:Transcription elongation factor:Quinolinate synthase:Zn-dependent hydrolases, including glyoxylases:Uncharacterized protein conserved in bacteria:Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes:Predicted membrane-associated HD superfamily hydrolase:Low specificity phosphatase (HAD superfamily):Predicted nucleic-acid-binding protein implicated in transcription termination:3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase:Amino acid transport and metabolism:Amino acid transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Lipopolysaccharide biosynthesis:One carbon pool by folate:Carbon fixation pathways in prokaryotes:Thiamine metabolism:Nicotinate and nicotinamide metabolism:Metabolic pathways:Microbial metabolism in diverse environments:Mismatch repair:Sulfur relay system:General function prediction only:General function prediction only:Function unknown:Function unknown:HDIG:nadA:KDO8P_synth:HAD-SF-IIIA:NusA:Folding Sorting and Degradation:Replication and Repair:Genetic Information Processing:Global:Metabolism:Metabolism of Cofactors and Vitamins:Glycan Biosynthesis and Metabolism:Energy Metabolism:Metabolism:Poorly characterized:Metabolism:Energy Metabolism:Transcription:Transcription factors:Unknown function:Enzymes of unknown specificity:Biosynthesis of cofactors, prosthetic groups, and carriers:Pyridine nucleotides:Cell envelope:Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Cellular processes and signaling:Information storage and processing:Cell envelope:Biosynthesis of cofactors, prosthetic groups, and carriers:Unknown function:Transcription:Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides:Pyridine nucleotides:Enzymes of unknown specificity:Transcription factors:Global:Genetic Information Processing:Metabolism:Metabolism:Replication and Repair:Folding Sorting and Degradation:Metabolism of Cofactors and Vitamins:Glycan Biosynthesis and Metabolism" 145 "Energy production and conversion:Energy production and conversion:Adenylosuccinate lyase:Ribosomal protein S16:Molecular chaperone, HSP90 family:Uncharacterized flavoproteins:ATPases of the AAA+ class:Cation/multidrug efflux pump:Membrane-fusion protein:Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases):Plastocyanin:Nucleotide transport and metabolism:Nucleotide transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Photosynthesis:Photosynthesis - antenna proteins:Purine metabolism:Alanine aspartate and glutamate metabolism:Porphyrin and chlorophyll metabolism:Metabolic pathways:Biosynthesis of secondary metabolites:Ribosome:Secondary metabolites biosynthesis, transport and catabolism:Secondary metabolites biosynthesis, transport and catabolism:General function prediction only:General function prediction only:S16:2A0602:purB:psbD:psbC:LPOR:RND_mfp:cyanin_plasto:PS_II_CP47:Defense mechanisms:Defense mechanisms:Amino Acid Metabolism:Global:Metabolism:Nucleotide Metabolism:Energy Metabolism:Metabolism:Poorly characterized:Metabolism:Cellular processes and signaling:Information storage and processing:Biosynthesis of cofactors, prosthetic groups, and carriers:Energy Metabolism:Energy metabolism:Photosynthesis:Purines, pyrimidines, nucleosides, and nucleotides:Purine ribonucleotide biosynthesis:Protein synthesis:Ribosomal proteins: synthesis and modification:Transport and binding proteins:Unknown substrate:Biosynthesis of cofactors, prosthetic groups, and carriers:Chlorophyll and bacteriochlorphyll:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Transport and binding proteins:Protein synthesis:Purines, pyrimidines, nucleosides, and nucleotides:Energy metabolism:Chlorophyll and bacteriochlorphyll:Unknown substrate:Ribosomal proteins: synthesis and modification:Purine ribonucleotide biosynthesis:Photosynthesis:Global:Genetic Information Processing:Metabolism:Metabolism:Translation:Metabolism of Cofactors and Vitamins:Amino Acid Metabolism:Metabolism of Cofactors and Vitamins:Nucleotide Metabolism:Genetic Information Processing:Translation" 146 "NAD-dependent DNA ligase (contains BRCT domain type II):Hydrogenase maturation factor:Membrane carboxypeptidase (penicillin-binding protein):Predicted glycosyltransferases:Multiple antibiotic transporter:Replication, recombination and repair:Replication, recombination and repair:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:DNA replication:Base excision repair:Nucleotide excision repair:Mismatch repair:General function prediction only:General function prediction only:TIGR00427:dnlj:PBP_1a_fam:hypE:Intracellular trafficking, secretion, and vesicular transport:Intracellular trafficking, secretion, and vesicular transport:DNA replication, recombination, and repair:Genetic Information Processing:DNA replication, recombination, and repair:General:Biosynthesis and degradation of murein sacculus and peptidoglycan:DNA metabolism:Unknown function:Cell envelope:Information storage and processing:Cellular processes and signaling:Poorly characterized:Genetic Information Processing:Replication and Repair:DNA metabolism:Replication and Repair:Unknown function:General:Cell envelope:Biosynthesis and degradation of murein sacculus and peptidoglycan:Information storage and processing:Cellular processes and signaling:Poorly characterized" 147 "Energy production and conversion:Energy production and conversion:Superfamily I DNA and RNA helicases:Uncharacterized protein conserved in bacteria:Beta-glucosidase-related glycosidases:Uncharacterized conserved protein:Uncharacterized Fe-S protein:Uncharacterized conserved protein:Transcriptional regulator/sugar kinase:Predicted NAD/FAD-dependent oxidoreductase:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Glycolysis / Gluconeogenesis:Galactose metabolism:Cyanoamino acid metabolism:Starch and sucrose metabolism:Amino sugar and nucleotide sugar metabolism:Streptomycin biosynthesis:Metabolic pathways:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Nucleotide excision repair:Mismatch repair:General function prediction only:General function prediction only:Function unknown:Function unknown:TIGR00046:TIGR00276:Global:Metabolism:Carbohydrate Metabolism:Energy metabolism:Electron transport:Protein synthesis:tRNA and rRNA base modification:Information storage and processing:Metabolism:Poorly characterized:Protein synthesis:Energy metabolism:tRNA and rRNA base modification:Electron transport:Global:Genetic Information Processing:Metabolism:Metabolism:Replication and Repair:Biosynthesis of Other Secondary Metabolites:Carbohydrate Metabolism:Metabolism of Other Amino Acids:Metabolism:Poorly characterized:Metabolism of Other Amino Acids:Metabolism:Biosynthesis of Other Secondary Metabolites:Information storage and processing:Genetic Information Processing:Replication and Repair" 148 "Energy production and conversion:Energy production and conversion:Predicted GTPase, probable translation factor:F0F1-type ATP synthase, alpha subunit:Enolase:Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase:Porphobilinogen deaminase:Inorganic pyrophosphatase:Ribosome recycling factor:Citrate synthase:Carbamoylphosphate synthase small subunit:Thiol-disulfide isomerase and thioredoxins:Fructose-1,6-bisphosphatase/sedoheptulose 1,7-bisphosphatase and related proteins:ATP sulfurylase (sulfate adenylyltransferase):Amino acid transport and metabolism:Amino acid transport and metabolism:Nucleotide transport and metabolism:Nucleotide transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Glycolysis / Gluconeogenesis:Citrate cycle (TCA cycle):Pentose phosphate pathway:Fructose and mannose metabolism:Oxidative phosphorylation:Photosynthesis:Purine metabolism:Pyrimidine metabolism:Alanine aspartate and glutamate metabolism:Selenocompound metabolism:Glyoxylate and dicarboxylate metabolism:Methane metabolism:Carbon fixation in photosynthetic organisms:Porphyrin and chlorophyll metabolism:Sulfur metabolism:Metabolic pathways:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:RNA degradation:purC:TIGR00092:hemC:glpX:sopT:frr:atpA:eno:thioredoxin:CPSaseIIsmall:cit_synth_II:Metabolism of Cofactors and Vitamins:Metabolism:Genetic Information Processing:Folding Sorting and Degradation:Metabolism:Global:Metabolism:Cellular processes and signaling:Information storage and processing:Biosynthesis of cofactors, prosthetic groups, and carriers:Unknown function:Protein synthesis:Purines, pyrimidines, nucleosides, and nucleotides:Energy metabolism:Central intermediary metabolism:Carbohydrate Metabolism:Central intermediary metabolism:Sulfur metabolism:Energy metabolism:ATP-proton motive force interconversion:Electron transport:Glycolysis/gluconeogenesis:Pentose phosphate pathway:Purines, pyrimidines, nucleosides, and nucleotides:Purine ribonucleotide biosynthesis:Pyrimidine ribonucleotide biosynthesis:Protein synthesis:Translation factors:Unknown function:General:Biosynthesis of cofactors, prosthetic groups, and carriers:Heme, porphyrin, and cobalamin:Information storage and processing:Cellular processes and signaling:Metabolism:Heme, porphyrin, and cobalamin:General:Translation factors:Pyrimidine ribonucleotide biosynthesis:Purine ribonucleotide biosynthesis:Pentose phosphate pathway:Glycolysis/gluconeogenesis:Electron transport:ATP-proton motive force interconversion:Sulfur metabolism:Global:Genetic Information Processing:Metabolism:Metabolism:Folding Sorting and Degradation:Metabolism of Cofactors and Vitamins:Metabolism of Other Amino Acids:Amino Acid Metabolism:Nucleotide Metabolism:Nucleotide Metabolism:Energy Metabolism:Amino Acid Metabolism:Energy Metabolism:Metabolism of Other Amino Acids:Carbohydrate Metabolism" 149 "Energy production and conversion:Energy production and conversion:Single-stranded DNA-specific exonuclease:Mannose-6-phosphate isomerase:Succinate dehydrogenase/fumarate reductase, flavoprotein subunit:Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes:Putative threonine efflux protein:Uncharacterized conserved protein:Uncharacterized conserved protein:Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit:L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily:Amino acid transport and metabolism:Amino acid transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Replication, recombination and repair:Replication, recombination and repair:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Citrate cycle (TCA cycle):Oxidative phosphorylation:Toluene degradation:Butanoate metabolism:Carbon fixation pathways in prokaryotes:Metabolic pathways:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Base excision repair:Mismatch repair:Homologous recombination:General function prediction only:General function prediction only:Function unknown:Function unknown:TIGR00299:recJ:sdhA_Bsu:F420_cofG:Poorly characterized:Global:Metabolism:Metabolism:Cellular processes and signaling:Information storage and processing:Energy metabolism:TCA cycle:DNA metabolism:DNA replication, recombination, and repair:Hypothetical proteins:Conserved:Biosynthesis of cofactors, prosthetic groups, and carriers:Other:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Biosynthesis of cofactors, prosthetic groups, and carriers:Hypothetical proteins:DNA metabolism:Energy metabolism:Other:Conserved:Carbohydrate Metabolism:DNA replication, recombination, and repair:TCA cycle:Global:Genetic Information Processing:Metabolism:Metabolism:Replication and Repair:Xenobiotics Biodegradation and Metabolism:Xenobiotics Biodegradation and Metabolism:Energy Metabolism:Energy Metabolism:Genetic Information Processing:Replication and Repair:Carbohydrate Metabolism:Metabolism" 150 "Energy production and conversion:Energy production and conversion:Kef-type K+ transport systems, membrane components:DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32):Cell division protein FtsI/penicillin-binding protein 2:Cation/multidrug efflux pump:Membrane-fusion protein:NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit:Fe-S oxidoreductase:Tfp pilus assembly protein PilN:Tfp pilus assembly protein, ATPase PilM:Transcription:Transcription:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Cell motility:Cell motility:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Oxidative phosphorylation:Peptidoglycan biosynthesis:Metabolic pathways:Two-component system:RNA polymerase:2A0602:pilM:RND_mfp:ndhF3_CO2:chpXY:sigma70-ECF:Intracellular trafficking, secretion, and vesicular transport:Intracellular trafficking, secretion, and vesicular transport:Defense mechanisms:Defense mechanisms:Metabolism:Information storage and processing:Energy metabolism:Photosynthesis:Transport and binding proteins:Unknown substrate:Information storage and processing:Cellular processes and signaling:Metabolism:Transport and binding proteins:Energy metabolism:Unknown substrate:Photosynthesis:Global:Environmental Information Processing:Genetic Information Processing:Metabolism:Metabolism:Signal Transduction:Transcription:Metabolism:Glycan Biosynthesis and Metabolism:Energy Metabolism:Metabolism:Glycan Biosynthesis and Metabolism:Cellular processes and signaling:Genetic Information Processing:Transcription:Environmental Information Processing:Signal Transduction:Energy Metabolism:Global" 151 "Chromatin structure and dynamics:Chromatin structure and dynamics:Energy production and conversion:Energy production and conversion:Deacetylases, including yeast histone deacetylase and acetoin utilization protein:Uncharacterized protein conserved in bacteria:Uncharacterized protein, putative amidase:Uncharacterized Fe-S protein:Predicted membrane protein:Transcriptional regulator/sugar kinase:Uncharacterized protein conserved in bacteria:Uncharacterized protein conserved in bacteria:Uncharacterized iron-regulated protein:Phage baseplate assembly protein W:Phage-related baseplate assembly protein:P2-like prophage tail protein X:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Transcription:Transcription:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Glycolysis / Gluconeogenesis:Galactose metabolism:Arginine and proline metabolism:Starch and sucrose metabolism:Amino sugar and nucleotide sugar metabolism:Streptomycin biosynthesis:Metabolic pathways:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Secondary metabolites biosynthesis, transport and catabolism:Secondary metabolites biosynthesis, transport and catabolism:General function prediction only:General function prediction only:Function unknown:Function unknown:TIGR00046:TIGR00276:TIGR00297:Hypothetical proteins:Conserved:Information storage and processing:Metabolism:Poorly characterized:Poorly characterized:Metabolism:Information storage and processing:Hypothetical proteins:Protein synthesis:Energy metabolism:Conserved:tRNA and rRNA base modification:Electron transport:Global:Metabolism:Metabolism:Biosynthesis of Other Secondary Metabolites:Amino Acid Metabolism:Amino Acid Metabolism:Carbohydrate Metabolism:Biosynthesis of Other Secondary Metabolites:Metabolism:Global:Metabolism:Carbohydrate Metabolism:Energy metabolism:Electron transport:Protein synthesis:tRNA and rRNA base modification" 152 "Glutamyl- and glutaminyl-tRNA synthetases:Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase:Cytosine/adenosine deaminases:Uncharacterized protein, putative amidase:ABC-type sulfate transport system, periplasmic component:Predicted membrane protein:Cytochrome P450:Uncharacterized conserved protein:Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain:Nucleotide transport and metabolism:Nucleotide transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Glycolysis / Gluconeogenesis:Arginine and proline metabolism:Bisphenol degradation:Polycyclic aromatic hydrocarbon degradation:Aminobenzoate degradation:Atrazine degradation:Limonene and pinene degradation:Metabolic pathways:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:ABC transporters:Secondary metabolites biosynthesis, transport and catabolism:Secondary metabolites biosynthesis, transport and catabolism:General function prediction only:General function prediction only:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:GGDEF:TIGR00297:3a0106s03:GAPDH-I:queuosine_YadB:Amino Acid Metabolism:Carbohydrate Metabolism:Environmental Information Processing:Membrane Transport:Metabolism:Global:Metabolism:Poorly characterized:Metabolism:Cellular processes and signaling:Information storage and processing:Signal transduction:Carbohydrate Metabolism:Energy metabolism:Glycolysis/gluconeogenesis:Protein synthesis:tRNA and rRNA base modification:Transport and binding proteins:Anions:Hypothetical proteins:Conserved:Signal transduction:Other:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Hypothetical proteins:Transport and binding proteins:Protein synthesis:Energy metabolism:Other:Conserved:Anions:tRNA and rRNA base modification:Glycolysis/gluconeogenesis:Global:Environmental Information Processing:Metabolism:Metabolism:Membrane Transport:Xenobiotics Biodegradation and Metabolism:Metabolism of Terpenoids and Polyketides:Xenobiotics Biodegradation and Metabolism:Amino Acid Metabolism:Metabolism of Terpenoids and Polyketides" 153 "Energy production and conversion:Energy production and conversion:Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases:6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase:Glycosyltransferase:Acyl-[acyl carrier protein]--UDP-N-acetylglucosamine O-acyltransferase:Homoserine acetyltransferase:Cytochrome P450:Predicted enolase-phosphatase:Amino acid transport and metabolism:Amino acid transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Cysteine and methionine metabolism:Bisphenol degradation:Amino sugar and nucleotide sugar metabolism:Lipopolysaccharide biosynthesis:Polycyclic aromatic hydrocarbon degradation:Aminobenzoate degradation:Limonene and pinene degradation:Sulfur metabolism:Metabolic pathways:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Secondary metabolites biosynthesis, transport and catabolism:Secondary metabolites biosynthesis, transport and catabolism:HAD-SF-IA-v1:lipid_A_lpxA:salvage_mtnB:Xenobiotics Biodegradation and Metabolism:Cell envelope:Amino acid biosynthesis:Unknown function:Global:Metabolism:Unknown function:Enzymes of unknown specificity:Amino acid biosynthesis:Aspartate family:Cell envelope:Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides:Cellular processes and signaling:Metabolism:Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides:Aspartate family:Enzymes of unknown specificity:Global:Metabolism:Metabolism:Xenobiotics Biodegradation and Metabolism:Metabolism of Terpenoids and Polyketides:Glycan Biosynthesis and Metabolism:Amino Acid Metabolism:Metabolism:Energy Metabolism:Carbohydrate Metabolism:Metabolism:Energy Metabolism:Amino Acid Metabolism:Cellular processes and signaling:Glycan Biosynthesis and Metabolism:Metabolism of Terpenoids and Polyketides:Carbohydrate Metabolism" 154 "Chloride channel protein EriC:Riboflavin synthase alpha chain:Predicted Zn-dependent proteases and their inactivated homologs:Acetyltransferases:Thioredoxin reductase:ABC-type antimicrobial peptide transport system, permease component:Predicted nucleoside-diphosphate-sugar epimerases:Predicted ATPase or kinase:ABC-type metal ion transport system, periplasmic component/surface adhesin:ABC-type Mn/Zn transport systems, ATPase component:Pyridoxal phosphate biosynthesis protein:Predicted flavoproteins:Methylase involved in ubiquinone/menaquinone biosynthesis:Gentisate 1,2-dioxygenase:Uncharacterized protein related to glutamine synthetase:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Pyrimidine metabolism:Alanine aspartate and glutamate metabolism:Arginine and proline metabolism:Riboflavin metabolism:Vitamin B6 metabolism:Nitrogen metabolism:Metabolic pathways:Microbial metabolism in diverse environments:Two-component system:Secondary metabolites biosynthesis, transport and catabolism:Secondary metabolites biosynthesis, transport and catabolism:General function prediction only:General function prediction only:HI0065_YjeE:ribE:TIGR00275:pdxA:TRX_reduct:Defense mechanisms:Defense mechanisms:Electron transport:Nucleotide Metabolism:Amino Acid Metabolism:Metabolism of Cofactors and Vitamins:Signal Transduction:Metabolism:Metabolism:Environmental Information Processing:Global:Electron transport:Enzymes of unknown specificity:Pyridoxine:Riboflavin, FMN, and FAD:Energy metabolism:Unknown function:Biosynthesis of cofactors, prosthetic groups, and carriers:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Energy Metabolism:Nucleotide Metabolism:Amino Acid Metabolism:Metabolism of Cofactors and Vitamins:Environmental Information Processing:Signal Transduction:Global:Metabolism:Energy metabolism:Energy Metabolism:Unknown function:Enzymes of unknown specificity:Biosynthesis of cofactors, prosthetic groups, and carriers:Pyridoxine:Riboflavin, FMN, and FAD:Cellular processes and signaling:Metabolism:Poorly characterized" 155 "Energy production and conversion:Energy production and conversion:Glutamine amidotransferase:Predicted Zn-dependent proteases and their inactivated homologs:Glycerol dehydrogenase and related enzymes:Glutaredoxin and related proteins:ABC-type multidrug transport system, ATPase and permease components:NAD(FAD)-utilizing enzyme possibly involved in translation:Peroxiredoxin:Predicted nucleic acid-binding protein, contains PIN domain:Teichoic acid biosynthesis proteins:Uncharacterized protein conserved in bacteria:Amino acid transport and metabolism:Amino acid transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Histidine metabolism:Glycerolipid metabolism:Metabolic pathways:Biosynthesis of secondary metabolites:General function prediction only:General function prediction only:Function unknown:Function unknown:gid_trmFO:wecG_tagA_cpsF:IMP_synth_hisH:GRX_bact:Defense mechanisms:Defense mechanisms:Amino acid biosynthesis:Amino Acid Metabolism:Metabolism:Metabolism:Global:Electron transport:tRNA and rRNA base modification:Histidine family:Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides:Energy metabolism:Protein synthesis:Amino acid biosynthesis:Cell envelope:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Lipid Metabolism:Amino Acid Metabolism:Global:Metabolism:Energy metabolism:Electron transport:Protein synthesis:tRNA and rRNA base modification:Lipid Metabolism:Histidine family:Cell envelope:Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized" 156 "Energy production and conversion:Energy production and conversion:Gamma-glutamyl phosphate reductase:3,4-dihydroxy-2-butanone 4-phosphate synthase:Fe-S oxidoreductase:Predicted oxidoreductases of the aldo/keto reductase family:Predicted membrane-associated HD superfamily hydrolase:Uncharacterized conserved protein:Uracil-DNA glycosylase:4-hydroxybenzoate synthetase (chorismate lyase):Gentisate 1,2-dioxygenase:Predicted protease with the C-terminal PDZ domain:Amino acid transport and metabolism:Amino acid transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Replication, recombination and repair:Replication, recombination and repair:Purine metabolism:Pyrimidine metabolism:Arginine and proline metabolism:Riboflavin metabolism:Metabolic pathways:DNA replication:Mismatch repair:Homologous recombination:Secondary metabolites biosynthesis, transport and catabolism:Secondary metabolites biosynthesis, transport and catabolism:General function prediction only:General function prediction only:Function unknown:Function unknown:HDIG:proA:ribA:TIGR00726:UDG_fam4:intein_Cterm:Biosynthesis of cofactors, prosthetic groups, and carriers:DNA metabolism:DNA replication, recombination, and repair:Unknown function:General:Amino acid biosynthesis:Glutamate family:Biosynthesis of cofactors, prosthetic groups, and carriers:Riboflavin, FMN, and FAD:Information storage and processing:Metabolism:Poorly characterized:Amino acid biosynthesis:Unknown function:DNA metabolism:Riboflavin, FMN, and FAD:Glutamate family:General:DNA replication, recombination, and repair:Global:Genetic Information Processing:Metabolism:Metabolism:Replication and Repair:Metabolism of Cofactors and Vitamins:Metabolism:Amino Acid Metabolism:Nucleotide Metabolism:Poorly characterized:Metabolism:Amino Acid Metabolism:Information storage and processing:Metabolism of Cofactors and Vitamins:Genetic Information Processing:Replication and Repair:Nucleotide Metabolism:Global:Metabolism" 157 "Energy production and conversion:Energy production and conversion:Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain:Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase:Acyl carrier protein:3-oxoacyl-(acyl-carrier-protein) synthase:Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit:Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component:Predicted hydrolase of the HAD superfamily:2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase:Carbon dioxide concentrating mechanism/carboxysome shell protein:Nucleotide transport and metabolism:Nucleotide transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Glycolysis / Gluconeogenesis:Citrate cycle (TCA cycle):Fatty acid biosynthesis:Purine metabolism:Valine leucine and isoleucine biosynthesis:Pyruvate metabolism:Butanoate metabolism:Carbon fixation in photosynthetic organisms:Porphyrin and chlorophyll metabolism:Metabolic pathways:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Secondary metabolites biosynthesis, transport and catabolism:Secondary metabolites biosynthesis, transport and catabolism:General function prediction only:General function prediction only:TIGR00302:acyl_carrier:GAPDH-I:HAD-SF-IIIA:FGAM_synth_I:BchM-ChlM:fabF:PDH_E1_alph_y:Metabolism of Cofactors and Vitamins:Carbohydrate Metabolism:Global:Metabolism:Metabolism:Poorly characterized:Metabolism:Biosynthesis of cofactors, prosthetic groups, and carriers:Unknown function:Purines, pyrimidines, nucleosides, and nucleotides:Carbohydrate Metabolism:Energy metabolism:Glycolysis/gluconeogenesis:Pyruvate dehydrogenase:Fatty acid and phospholipid metabolism:Biosynthesis:Purines, pyrimidines, nucleosides, and nucleotides:Purine ribonucleotide biosynthesis:Unknown function:Enzymes of unknown specificity:Biosynthesis of cofactors, prosthetic groups, and carriers:Chlorophyll and bacteriochlorphyll:Metabolism:Poorly characterized:Fatty acid and phospholipid metabolism:Energy metabolism:Chlorophyll and bacteriochlorphyll:Enzymes of unknown specificity:Purine ribonucleotide biosynthesis:Biosynthesis:Pyruvate dehydrogenase:Glycolysis/gluconeogenesis:Global:Metabolism:Metabolism:Metabolism of Cofactors and Vitamins:Amino Acid Metabolism:Nucleotide Metabolism:Lipid Metabolism:Nucleotide Metabolism:Energy Metabolism:Lipid Metabolism:Amino Acid Metabolism:Energy Metabolism" 158 "Predicted methyltransferases:ATPase involved in DNA replication:Exonuclease III:Predicted thioesterase:ABC-type Mn2+/Zn2+ transport systems, permease components:Predicted extracellular nuclease:Replication, recombination and repair:Replication, recombination and repair:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Purine metabolism:Pyrimidine metabolism:Metabolic pathways:DNA replication:Base excision repair:Mismatch repair:Homologous recombination:General function prediction only:General function prediction only:TIGR00096:exoDNase_III:Global:Metabolism:Nucleotide Metabolism:DNA metabolism:DNA replication, recombination, and repair:Unknown function:Enzymes of unknown specificity:Information storage and processing:Metabolism:Poorly characterized:DNA metabolism:Enzymes of unknown specificity:DNA replication, recombination, and repair:Global:Genetic Information Processing:Metabolism:Metabolism:Information storage and processing:Replication and Repair:Metabolism:Poorly characterized:Metabolism:Nucleotide Metabolism:Unknown function:Genetic Information Processing:Replication and Repair" 159 "Energy production and conversion:Energy production and conversion:F0F1-type ATP synthase, beta subunit:F0F1-type ATP synthase, alpha subunit:Peptidyl-tRNA hydrolase:F0F1-type ATP synthase, gamma subunit:F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit):Uroporphyrinogen-III decarboxylase:F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K:F0F1-type ATP synthase, subunit b:F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein):Coenzyme transport and metabolism:Coenzyme transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Oxidative phosphorylation:Photosynthesis:Porphyrin and chlorophyll metabolism:Metabolic pathways:Biosynthesis of secondary metabolites:pth:atpA:atpD:ATP_synt_delta:ATPsyn_F1gamma:ATP_synt_epsi:ATP_synt_c:hemE:Energy metabolism:ATP-proton motive force interconversion:Protein synthesis:Other:Biosynthesis of cofactors, prosthetic groups, and carriers:Heme, porphyrin, and cobalamin:Information storage and processing:Metabolism:Metabolism:Information storage and processing:Biosynthesis of cofactors, prosthetic groups, and carriers:Protein synthesis:Energy metabolism:Heme, porphyrin, and cobalamin:Other:ATP-proton motive force interconversion:Global:Metabolism:Metabolism:Global:Metabolism of Cofactors and Vitamins:Metabolism:Metabolism of Cofactors and Vitamins:Energy Metabolism:Metabolism:Energy Metabolism" 160 "Xaa-Pro aminopeptidase:3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases:Fructose/tagatose bisphosphate aldolase:Exopolyphosphatase:Glycosyltransferases involved in cell wall biogenesis:Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2:rRNA methylases:Transcriptional regulator:Preprotein translocase subunit YidC:Deoxycytidine deaminase:Uncharacterized conserved protein:RimM protein, required for 16S rRNA processing:Predicted sulfurtransferase:Uncharacterized protein conserved in bacteria:Phosphosulfolactate phosphohydrolase and related enzymes:Amino acid transport and metabolism:Amino acid transport and metabolism:Nucleotide transport and metabolism:Nucleotide transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Glycolysis / Gluconeogenesis:Pentose phosphate pathway:Fructose and mannose metabolism:Ubiquinone and other terpenoid-quinone biosynthesis:Purine metabolism:Pyrimidine metabolism:Methane metabolism:Carbon fixation in photosynthetic organisms:Metabolic pathways:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Protein export:Bacterial secretion system:Sulfur relay system:General function prediction only:General function prediction only:Function unknown:Function unknown:TIGR00148:cbbA:rRNA_methyl_3:TIGR00278:16S_RimM:dCTP_deam:yidC_oxa1_cterm:Intracellular trafficking, secretion, and vesicular transport:Intracellular trafficking, secretion, and vesicular transport:Energy metabolism:Energy Metabolism:Nucleotide Metabolism:Metabolism of Cofactors and Vitamins:Folding Sorting and Degradation:Membrane Transport:Metabolism:Metabolism:Genetic Information Processing:Environmental Information Processing:Global:Glycolysis/gluconeogenesis:2'-Deoxyribonucleotide metabolism:RNA processing:tRNA and rRNA base modification:Protein and peptide secretion and trafficking:Conserved:General:Energy metabolism:Purines, pyrimidines, nucleosides, and nucleotides:Transcription:Protein synthesis:Protein fate:Hypothetical proteins:Unknown function:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Carbohydrate Metabolism:Energy Metabolism:Nucleotide Metabolism:Metabolism of Cofactors and Vitamins:Genetic Information Processing:Folding Sorting and Degradation:Environmental Information Processing:Membrane Transport:Global:Metabolism:Carbohydrate Metabolism:Glycolysis/gluconeogenesis:Purines, pyrimidines, nucleosides, and nucleotides:2'-Deoxyribonucleotide metabolism:Transcription:RNA processing:Protein synthesis:tRNA and rRNA base modification:Protein fate:Protein and peptide secretion and trafficking:Hypothetical proteins:Conserved:Unknown function:General:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized" 161 "Energy production and conversion:Energy production and conversion:Anthranilate/para-aminobenzoate synthases component I:Uridylate kinase:Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily):Dehydrogenases (flavoproteins):cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases:Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain:Predicted membrane protein:Cytochrome c, mono- and diheme variants:ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain:Fatty acid desaturase:Amino acid transport and metabolism:Amino acid transport and metabolism:Nucleotide transport and metabolism:Nucleotide transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Transcription:Transcription:Photosynthesis:Pyrimidine metabolism:Phenylalanine tyrosine and tryptophan biosynthesis:Porphyrin and chlorophyll metabolism:Terpenoid backbone biosynthesis:Carotenoid biosynthesis:Metabolic pathways:Biosynthesis of secondary metabolites:Two-component system:General function prediction only:General function prediction only:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:TIGR00701:type_I_sec_HlyB:BchP-ChlP:pyrH_bact:NtcA_cyano:Defense mechanisms:Defense mechanisms:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Environmental Information Processing:Nucleotide Metabolism:Amino Acid Metabolism:Metabolism of Cofactors and Vitamins:Metabolism of Terpenoids and Polyketides:Signal Transduction:Metabolism:Metabolism:Environmental Information Processing:Global:Nucleotide and nucleoside interconversions:DNA interactions:Protein and peptide secretion and trafficking:Conserved:Chlorophyll and bacteriochlorphyll:Purines, pyrimidines, nucleosides, and nucleotides:Regulatory functions:Protein fate:Hypothetical proteins:Biosynthesis of cofactors, prosthetic groups, and carriers:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Energy Metabolism:Nucleotide Metabolism:Amino Acid Metabolism:Metabolism of Cofactors and Vitamins:Metabolism of Terpenoids and Polyketides:Energy Metabolism:Signal Transduction:Global:Metabolism:Purines, pyrimidines, nucleosides, and nucleotides:Nucleotide and nucleoside interconversions:Regulatory functions:DNA interactions:Protein fate:Protein and peptide secretion and trafficking:Hypothetical proteins:Conserved:Biosynthesis of cofactors, prosthetic groups, and carriers:Chlorophyll and bacteriochlorphyll" 162 "Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain:Signal transduction histidine kinase:5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases:Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain:Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes:Predicted membrane protein:Sterol desaturase:Predicted transcriptional regulator:Nucleotide transport and metabolism:Nucleotide transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Transcription:Transcription:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:General function prediction only:General function prediction only:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:TIGR00423:Cellular processes and signaling:Hypothetical proteins:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Hypothetical proteins:Conserved:Information storage and processing:Conserved:Metabolism:Poorly characterized" 163 "Energy production and conversion:Energy production and conversion:Xaa-Pro aminopeptidase:Alanyl-tRNA synthetase:Ketol-acid reductoisomerase:3-phosphoglycerate kinase:Ribosome recycling factor:ABC-type amino acid transport/signal transduction systems, periplasmic component/domain:Rubredoxin:Predicted RNA-binding protein:Uncharacterized protein related to plant photosystem II stability/assembly factor:Predicted dehydrogenase:Amino acid transport and metabolism:Amino acid transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Glycolysis / Gluconeogenesis:Photosynthesis:Valine leucine and isoleucine biosynthesis:Carbon fixation in photosynthetic organisms:Pantothenate and CoA biosynthesis:Aminoacyl-tRNA biosynthesis:Metabolic pathways:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Ribosome:General function prediction only:General function prediction only:Signal transduction mechanisms:Signal transduction mechanisms:alaS:ilvC:frr:PS_II_psb29:AcACP_reductase:Genetic Information Processing:Translation:Cellular processes and signaling:Information storage and processing:Global:Metabolism:Amino acid biosynthesis:Protein synthesis:Central intermediary metabolism:Other:Energy metabolism:Photosynthesis:Protein synthesis:tRNA aminoacylation:Translation factors:Amino acid biosynthesis:Pyruvate family:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Energy metabolism:Central intermediary metabolism:Pyruvate family:Translation factors:tRNA aminoacylation:Carbohydrate Metabolism:Photosynthesis:Other:Global:Genetic Information Processing:Metabolism:Metabolism:Translation:Metabolism of Cofactors and Vitamins:Amino Acid Metabolism:Energy Metabolism:Energy Metabolism:Carbohydrate Metabolism:Metabolism:Amino Acid Metabolism:Poorly characterized:Metabolism of Cofactors and Vitamins:Metabolism" 164 "Ribosomal protein L21:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Photosynthesis:Photosynthesis - antenna proteins:Metabolic pathways:Ribosome:L21:psaA:psaB:apcB:phycocy_alpha:phycocy_beta:Genetic Information Processing:Energy Metabolism:Global:Metabolism:Energy metabolism:Photosynthesis:Protein synthesis:Ribosomal proteins: synthesis and modification:Information storage and processing:Translation:Translation:Metabolism:Metabolism:Genetic Information Processing:Global:Photosynthesis:Ribosomal proteins: synthesis and modification:Energy metabolism:Protein synthesis:Information storage and processing:Metabolism:Energy Metabolism" 165 "Energy production and conversion:Energy production and conversion:Phosphoglucomutase:S-adenosylmethionine synthetase:Exopolyphosphatase:Glycosyltransferases involved in cell wall biogenesis:SAM-dependent methyltransferases:Carbamoylphosphate synthase small subunit:K+ transport systems, NAD-binding component:ABC-type phosphate transport system, permease component:ABC-type phosphate transport system, permease component:1-deoxy-D-xylulose 5-phosphate reductoisomerase:Nitroreductase:Mannose-1-phosphate guanylyltransferase:Predicted membrane GTPase involved in stress response:Dioxygenases related to 2-nitropropane dioxygenase:Predicted membrane protein:Amino acid transport and metabolism:Amino acid transport and metabolism:Nucleotide transport and metabolism:Nucleotide transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Glycolysis / Gluconeogenesis:Pentose phosphate pathway:Fructose and mannose metabolism:Galactose metabolism:Purine metabolism:Pyrimidine metabolism:Alanine aspartate and glutamate metabolism:Cysteine and methionine metabolism:Selenocompound metabolism:Starch and sucrose metabolism:Amino sugar and nucleotide sugar metabolism:Streptomycin biosynthesis:Terpenoid backbone biosynthesis:Metabolic pathways:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:ABC transporters:Secondary metabolites biosynthesis, transport and catabolism:Secondary metabolites biosynthesis, transport and catabolism:General function prediction only:General function prediction only:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:small_GTP:Dxr:3a0107s02c:metK:IMP_DH_rel_2:CPSaseIIsmall:GMP_PMI:phosphate_pstC:Global:Membrane Transport:Environmental Information Processing:Biosynthesis of Other Secondary Metabolites:Metabolism of Terpenoids and Polyketides:Metabolism of Other Amino Acids:Amino Acid Metabolism:Nucleotide Metabolism:Carbohydrate Metabolism:Central intermediary metabolism:Other:Purines, pyrimidines, nucleosides, and nucleotides:Pyrimidine ribonucleotide biosynthesis:Transport and binding proteins:Anions:Unknown function:General:Biosynthesis of cofactors, prosthetic groups, and carriers:Other:Cell envelope:Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides:Cellular processes and signaling:Metabolism:Poorly characterized:Carbohydrate Metabolism:Metabolism:Poorly characterized:Metabolism:Cellular processes and signaling:Cell envelope:Biosynthesis of cofactors, prosthetic groups, and carriers:Unknown function:Transport and binding proteins:Purines, pyrimidines, nucleosides, and nucleotides:Central intermediary metabolism:Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides:Other:General:Anions:Pyrimidine ribonucleotide biosynthesis:Other:Global:Environmental Information Processing:Metabolism:Metabolism:Membrane Transport:Biosynthesis of Other Secondary Metabolites:Metabolism of Terpenoids and Polyketides:Metabolism of Other Amino Acids:Amino Acid Metabolism:Metabolism:Nucleotide Metabolism" 166 "Energy production and conversion:Energy production and conversion:Dephospho-CoA kinase:Anaerobic dehydrogenases, typically selenocysteine-containing:Biotin-(acetyl-CoA carboxylase) ligase:Predicted aminomethyltransferase related to GcvT:DNA repair exonuclease:Predicted Fe-S oxidoreductases:Anthranilate phosphoribosyltransferase:Helicase subunit of the DNA excision repair complex:Signal transduction histidine kinase:cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases:ABC-type cobalt transport system, ATPase component:3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase:Predicted membrane protein:Phosphohistidine phosphatase SixA:Predicted transcriptional regulator:Response regulator of citrate/malate metabolism:Amino acid transport and metabolism:Amino acid transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Pantothenate and CoA biosynthesis:Biotin metabolism:Nitrogen metabolism:Metabolic pathways:ABC transporters:Nucleotide excision repair:General function prediction only:General function prediction only:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:birA_ligase:TIGR00152:sixA:TIGR00341:uvrb:nitr_red_assoc:ygfZ_signature:Protein interactions:DNA metabolism:DNA replication, recombination, and repair:Protein synthesis:tRNA and rRNA base modification:Protein fate:Protein modification and repair:Hypothetical proteins:Conserved:Biosynthesis of cofactors, prosthetic groups, and carriers:Pantothenate and coenzyme A:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Biosynthesis of cofactors, prosthetic groups, and carriers:Hypothetical proteins:Protein fate:Protein synthesis:DNA metabolism:Regulatory functions:Pantothenate and coenzyme A:Conserved:Protein modification and repair:tRNA and rRNA base modification:DNA replication, recombination, and repair:Protein interactions:Global:Environmental Information Processing:Genetic Information Processing:Metabolism:Metabolism:Membrane Transport:Replication and Repair:Metabolism:Metabolism of Cofactors and Vitamins:Poorly characterized:Metabolism:Energy Metabolism:Cellular processes and signaling:Metabolism of Cofactors and Vitamins:Information storage and processing:Genetic Information Processing:Replication and Repair:Environmental Information Processing:Membrane Transport:Global:Metabolism:Energy Metabolism:Regulatory functions" 167 "Ribose 5-phosphate isomerase:Sulfite reductase, beta subunit (hemoprotein):Putative translation initiation inhibitor, yjgF family:Nucleoside-diphosphate-sugar epimerases:SAM-dependent methyltransferases:ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components:ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component:Uncharacterized conserved protein:DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog:Precorrin isomerase:Precorrin-2 methylase:Methylase of polypeptide chain release factors:Chorismate mutase:Amino acid transport and metabolism:Amino acid transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Citrate cycle (TCA cycle):Pentose phosphate pathway:Oxidative phosphorylation:Phenylalanine tyrosine and tryptophan biosynthesis:Toluene degradation:Butanoate metabolism:Carbon fixation in photosynthetic organisms:Carbon fixation pathways in prokaryotes:Porphyrin and chlorophyll metabolism:Nitrogen metabolism:Metabolic pathways:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:ABC transporters:RNA polymerase:Secondary metabolites biosynthesis, transport and catabolism:Secondary metabolites biosynthesis, transport and catabolism:General function prediction only:General function prediction only:Function unknown:Function unknown:TIGR00004:rpiA:hemK_fam:ntrCD:cobI_cbiL:CM_mono_aroH:CobG:sigma70-ECF:Cellular processes and signaling:Environmental Information Processing:Membrane Transport:Information storage and processing:Global:Metabolism:Biosynthesis of cofactors, prosthetic groups, and carriers:Amino acid biosynthesis:Energy metabolism:Pentose phosphate pathway:Transcription:Degradation of RNA:Protein fate:Protein modification and repair:Transport and binding proteins:Other:Amino acid biosynthesis:Aromatic amino acid family:Biosynthesis of cofactors, prosthetic groups, and carriers:Heme, porphyrin, and cobalamin:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Transport and binding proteins:Protein fate:Transcription:Energy metabolism:Heme, porphyrin, and cobalamin:Aromatic amino acid family:Other:Protein modification and repair:Carbohydrate Metabolism:Degradation of RNA:Pentose phosphate pathway:Global:Environmental Information Processing:Genetic Information Processing:Metabolism:Metabolism:Membrane Transport:Transcription:Xenobiotics Biodegradation and Metabolism:Metabolism of Cofactors and Vitamins:Amino Acid Metabolism:Energy Metabolism:Energy Metabolism:Carbohydrate Metabolism:Amino Acid Metabolism:Metabolism:Metabolism of Cofactors and Vitamins:Poorly characterized:Xenobiotics Biodegradation and Metabolism:Metabolism:Genetic Information Processing:Transcription" 168 "Energy production and conversion:Energy production and conversion:Fructose-1,6-bisphosphatase:Glucose-6-phosphate 1-dehydrogenase:Monoamine oxidase:NADH dehydrogenase, FAD-containing subunit:Permeases:O-acetylhomoserine sulfhydrylase:Cbb3-type cytochrome oxidase, cytochrome c subunit:Cbb3-type cytochrome oxidase, subunit 1:Glucose-6-P dehydrogenase subunit:Predicted membrane protein:Amino acid transport and metabolism:Amino acid transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Glycolysis / Gluconeogenesis:Pentose phosphate pathway:Fructose and mannose metabolism:Oxidative phosphorylation:Glycine serine and threonine metabolism:Cysteine and methionine metabolism:Arginine and proline metabolism:Histidine metabolism:Tyrosine metabolism:Phenylalanine metabolism:Tryptophan metabolism:Glutathione metabolism:Methane metabolism:Carbon fixation in photosynthetic organisms:Metabolic pathways:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:General function prediction only:General function prediction only:Function unknown:Function unknown:OpcA:zwf:OAH_OAS_sulfhy:Protein folding and stabilization:Amino acid biosynthesis:Serine family:Cellular processes and signaling:Metabolism:Poorly characterized:Amino acid biosynthesis:Protein fate:Energy metabolism:Serine family:Protein folding and stabilization:Pentose phosphate pathway:Global:Metabolism:Metabolism:Metabolism of Other Amino Acids:Amino Acid Metabolism:Energy Metabolism:Energy Metabolism:Amino Acid Metabolism:Carbohydrate Metabolism:Metabolism:Poorly characterized:Metabolism:Cellular processes and signaling:Carbohydrate Metabolism:Metabolism of Other Amino Acids:Global:Metabolism:Energy metabolism:Pentose phosphate pathway:Protein fate" 169 "Energy production and conversion:Energy production and conversion:Predicted ATPase of the PP-loop superfamily implicated in cell cycle control:Formamidopyrimidine-DNA glycosylase:Nucleoside-diphosphate-sugar epimerases:ATPase involved in DNA replication:Mannose-6-phosphate isomerase:Glycine/D-amino acid oxidases (deaminating):7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase:ABC-type metal ion transport system, periplasmic component/surface adhesin:Succinate dehydrogenase/fumarate reductase, flavoprotein subunit:ABC-type Mn/Zn transport systems, ATPase component:A/G-specific DNA glycosylase:Uncharacterized conserved protein:Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase:Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit:L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily:Cell cycle control, cell division, chromosome partitioning:Cell cycle control, cell division, chromosome partitioning:Amino acid transport and metabolism:Amino acid transport and metabolism:Nucleotide transport and metabolism:Nucleotide transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Replication, recombination and repair:Replication, recombination and repair:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Citrate cycle (TCA cycle):Oxidative phosphorylation:Purine metabolism:Pyrimidine metabolism:Toluene degradation:Butanoate metabolism:Carbon fixation pathways in prokaryotes:Folate biosynthesis:Metabolic pathways:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:DNA replication:Base excision repair:Mismatch repair:Homologous recombination:General function prediction only:General function prediction only:Function unknown:Function unknown:fpg:mutt:folK:sdhA_Bsu:lysidine_TilS_N:TCA cycle:DNA metabolism:DNA replication, recombination, and repair:Protein synthesis:tRNA and rRNA base modification:Biosynthesis of cofactors, prosthetic groups, and carriers:Folic acid:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Poorly characterized:Metabolism:Cellular processes and signaling:Information storage and processing:Biosynthesis of cofactors, prosthetic groups, and carriers:Protein synthesis:DNA metabolism:Energy metabolism:Folic acid:tRNA and rRNA base modification:DNA replication, recombination, and repair:TCA cycle:Global:Genetic Information Processing:Metabolism:Metabolism:Replication and Repair:Xenobiotics Biodegradation and Metabolism:Metabolism of Cofactors and Vitamins:Nucleotide Metabolism:Xenobiotics Biodegradation and Metabolism:Energy Metabolism:Genetic Information Processing:Replication and Repair:Metabolism of Cofactors and Vitamins:Carbohydrate Metabolism:Global:Metabolism:Nucleotide Metabolism:Energy Metabolism:Carbohydrate Metabolism:Energy metabolism" 170 "Energy production and conversion:Energy production and conversion:Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase:Dehydrogenases (flavoproteins):1-deoxy-D-xylulose 5-phosphate reductoisomerase:ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain:Tfp pilus assembly protein PilF:Amino acid transport and metabolism:Amino acid transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Cell motility:Cell motility:Alanine aspartate and glutamate metabolism:Glycine serine and threonine metabolism:Methane metabolism:Porphyrin and chlorophyll metabolism:Terpenoid backbone biosynthesis:Metabolic pathways:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Dxr:type_I_sec_HlyB:BchP-ChlP:Intracellular trafficking, secretion, and vesicular transport:Intracellular trafficking, secretion, and vesicular transport:Defense mechanisms:Defense mechanisms:Metabolism of Terpenoids and Polyketides:Amino Acid Metabolism:Metabolism of Cofactors and Vitamins:Metabolism of Terpenoids and Polyketides:Metabolism:Metabolism:Global:Protein and peptide secretion and trafficking:Other:Chlorophyll and bacteriochlorphyll:Protein fate:Biosynthesis of cofactors, prosthetic groups, and carriers:Cellular processes and signaling:Metabolism:Metabolism:Energy Metabolism:Amino Acid Metabolism:Metabolism of Cofactors and Vitamins:Energy Metabolism:Global:Metabolism:Protein fate:Protein and peptide secretion and trafficking:Biosynthesis of cofactors, prosthetic groups, and carriers:Other:Chlorophyll and bacteriochlorphyll:Cellular processes and signaling:Metabolism" 171 "Energy production and conversion:Energy production and conversion:7-keto-8-aminopelargonate synthetase and related enzymes:Predicted Zn-dependent proteases and their inactivated homologs:tRNA nucleotidyltransferase/poly(A) polymerase:Exonuclease III:Fe2+/Zn2+ uptake regulation proteins:Predicted thioesterase:DNA polymerase III, epsilon subunit and related 3'-5' exonucleases:Fe-S oxidoreductase:ABC-type Mn2+/Zn2+ transport systems, permease components:Cytochrome c, mono- and diheme variants:Molybdenum cofactor biosynthesis enzyme:Predicted signal transduction protein with a C-terminal ATPase domain:Uncharacterized protein, contains ParB-like nuclease domain:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Replication, recombination and repair:Replication, recombination and repair:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Photosynthesis:Purine metabolism:Pyrimidine metabolism:Biotin metabolism:Metabolic pathways:Two-component system:RNA degradation:DNA replication:Base excision repair:Mismatch repair:Homologous recombination:Sulfur relay system:General function prediction only:General function prediction only:Signal transduction mechanisms:Signal transduction mechanisms:exoDNase_III:moaA:Energy Metabolism:DNA metabolism:DNA replication, recombination, and repair:Biosynthesis of cofactors, prosthetic groups, and carriers:Molybdopterin:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Cellular processes and signaling:Information storage and processing:Biosynthesis of cofactors, prosthetic groups, and carriers:DNA metabolism:Molybdopterin:DNA replication, recombination, and repair:Global:Environmental Information Processing:Genetic Information Processing:Metabolism:Metabolism:Signal Transduction:Replication and Repair:Folding Sorting and Degradation:Metabolism of Cofactors and Vitamins:Energy Metabolism:Nucleotide Metabolism:Nucleotide Metabolism:Metabolism:Poorly characterized:Metabolism of Cofactors and Vitamins:Metabolism:Genetic Information Processing:Folding Sorting and Degradation:Replication and Repair:Environmental Information Processing:Signal Transduction:Global:Metabolism" 172 "Energy production and conversion:Energy production and conversion:Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase:Indole-3-glycerol phosphate synthase:Geranylgeranyl pyrophosphate synthase:Aspartyl-tRNA synthetase:Porphobilinogen deaminase:Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A):Aspartate/tyrosine/aromatic aminotransferase:SAM-dependent methyltransferases:Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes:Biotin carboxyl carrier protein:Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes:Amino acid transport and metabolism:Amino acid transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Glycolysis / Gluconeogenesis:Citrate cycle (TCA cycle):Fatty acid biosynthesis:Glycine serine and threonine metabolism:Valine leucine and isoleucine degradation:Valine leucine and isoleucine biosynthesis:Lysine biosynthesis:Phenylalanine tyrosine and tryptophan biosynthesis:Pyruvate metabolism:Propanoate metabolism:Pantothenate and CoA biosynthesis:Porphyrin and chlorophyll metabolism:Terpenoid backbone biosynthesis:Aminoacyl-tRNA biosynthesis:Metabolic pathways:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Secondary metabolites biosynthesis, transport and catabolism:Secondary metabolites biosynthesis, transport and catabolism:General function prediction only:General function prediction only:efp:hemC:aspS_bact:BCCP:ilvE_I:lipoamide_DH:DAPAT_plant:Metabolism of Terpenoids and Polyketides:Lipid Metabolism:Amino Acid Metabolism:Metabolism of Cofactors and Vitamins:Metabolism of Terpenoids and Polyketides:Translation:Metabolism:Metabolism:Genetic Information Processing:Global:Biosynthesis:tRNA aminoacylation:Translation factors:Pyruvate family:Heme, porphyrin, and cobalamin:Fatty acid and phospholipid metabolism:Protein synthesis:Amino acid biosynthesis:Biosynthesis of cofactors, prosthetic groups, and carriers:Information storage and processing:Metabolism:Poorly characterized:Metabolism:Carbohydrate Metabolism:Lipid Metabolism:Amino Acid Metabolism:Metabolism of Cofactors and Vitamins:Carbohydrate Metabolism:Genetic Information Processing:Translation:Global:Metabolism:Fatty acid and phospholipid metabolism:Biosynthesis:Protein synthesis:tRNA aminoacylation:Translation factors:Amino acid biosynthesis:Pyruvate family:Biosynthesis of cofactors, prosthetic groups, and carriers:Heme, porphyrin, and cobalamin:Information storage and processing:Metabolism:Poorly characterized" 173 "Putative translation factor (SUA5):Molecular chaperone (small heat shock protein):Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain:ATPases with chaperone activity, ATP-binding subunit:Predicted nucleoside-diphosphate sugar epimerase:Adenosine deaminase:GTPases:Lysophospholipase:Predicted GTPase:Uncharacterized protein conserved in bacteria:Superfamily II RNA helicase:Uncharacterized protein conserved in cyanobacteria:Uncharacterized conserved protein:Nucleotide transport and metabolism:Nucleotide transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Replication, recombination and repair:Replication, recombination and repair:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Photosynthesis:Purine metabolism:Metabolic pathways:General function prediction only:General function prediction only:Function unknown:Function unknown:TIGR00057:yfcH:toxin_Txe_YoeB:PS_II_psb28:GTP_HflX:chaperone_ClpB:Nucleotide Metabolism:Energy Metabolism:Energy metabolism:Photosynthesis:Protein fate:Protein folding and stabilization:Mobile and extrachromosomal element functions:Other:Hypothetical proteins:Conserved:Unknown function:General:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Energy Metabolism:Metabolism:Poorly characterized:Metabolism:Cellular processes and signaling:Information storage and processing:Unknown function:Hypothetical proteins:Mobile and extrachromosomal element functions:Protein fate:Energy metabolism:General:Conserved:Other:Protein folding and stabilization:Photosynthesis:Global:Metabolism:Metabolism:Metabolism:Nucleotide Metabolism:Global" 174 "Energy production and conversion:Energy production and conversion:FAD/FMN-containing dehydrogenases:tRNA nucleotidyltransferase/poly(A) polymerase:Predicted ATP-dependent serine protease:Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes:A/G-specific DNA glycosylase:RecG-like helicase:Predicted transcriptional regulator:Pyrimidine reductase, riboflavin biosynthesis:Molybdenum cofactor biosynthesis enzyme:Amino acid transport and metabolism:Amino acid transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Thiamine metabolism:Riboflavin metabolism:Metabolic pathways:RNA degradation:Base excision repair:Homologous recombination:Sulfur relay system:ribD_Cterm:sms:mutt:recG:rrf2_super:moaA:Metabolism:Global:Replication and Repair:Folding Sorting and Degradation:Genetic Information Processing:Metabolism of Cofactors and Vitamins:Metabolism of Cofactors and Vitamins:DNA metabolism:DNA replication, recombination, and repair:Unknown function:General:Biosynthesis of cofactors, prosthetic groups, and carriers:Molybdopterin:Information storage and processing:Cellular processes and signaling:Metabolism:Metabolism:Metabolism:Cellular processes and signaling:Information storage and processing:Biosynthesis of cofactors, prosthetic groups, and carriers:Unknown function:DNA metabolism:Molybdopterin:General:DNA replication, recombination, and repair:Global:Genetic Information Processing:Metabolism:Metabolism:Replication and Repair:Folding Sorting and Degradation" 175 "Energy production and conversion:Energy production and conversion:Transketolase:F0F1-type ATP synthase, beta subunit:F0F1-type ATP synthase, gamma subunit:Preprotein translocase subunit SecD:F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit):F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K:F0F1-type ATP synthase, subunit b:F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein):ATP sulfurylase (sulfate adenylyltransferase):Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Pentose phosphate pathway:Oxidative phosphorylation:Photosynthesis:Purine metabolism:Selenocompound metabolism:Carbon fixation in photosynthetic organisms:Sulfur metabolism:Metabolic pathways:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Protein export:Bacterial secretion system:tktlase_bact:sopT:2A0604s01:atpD:ATP_synt_delta:ATPsyn_F1gamma:ATP_synt_epsi:ATP_synt_c:Intracellular trafficking, secretion, and vesicular transport:Intracellular trafficking, secretion, and vesicular transport:Carbohydrate Metabolism:Environmental Information Processing:Membrane Transport:Global:Metabolism:Central intermediary metabolism:Protein and peptide secretion and trafficking:Pentose phosphate pathway:Central intermediary metabolism:Sulfur metabolism:Energy metabolism:ATP-proton motive force interconversion:Pentose phosphate pathway:Protein fate:Protein and peptide secretion and trafficking:Cellular processes and signaling:Metabolism:ATP-proton motive force interconversion:Sulfur metabolism:Global:Environmental Information Processing:Genetic Information Processing:Metabolism:Metabolism:Membrane Transport:Folding Sorting and Degradation:Metabolism of Other Amino Acids:Nucleotide Metabolism:Carbohydrate Metabolism:Energy Metabolism:Energy Metabolism:Metabolism:Metabolism:Cellular processes and signaling:Nucleotide Metabolism:Protein fate:Metabolism of Other Amino Acids:Energy metabolism:Genetic Information Processing:Folding Sorting and Degradation" 176 "Energy production and conversion:Energy production and conversion:Predicted sugar kinase:Superfamily I DNA and RNA helicases:Acetyltransferases:Coproporphyrinogen III oxidase and related Fe-S oxidoreductases:5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases:Metal-dependent hydrolases of the beta-lactamase superfamily III:FOG: HEAT repeat:Cobalamin biosynthesis protein CobN and related Mg-chelatases:DNA-binding protein, stimulates sugar fermentation:Uncharacterized conserved protein:Uncharacterized protein conserved in bacteria:Phage baseplate assembly protein W:Uncharacterized protein conserved in bacteria:Nucleotide transport and metabolism:Nucleotide transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Replication, recombination and repair:Replication, recombination and repair:Porphyrin and chlorophyll metabolism:Metabolic pathways:Biosynthesis of secondary metabolites:Nucleotide excision repair:Mismatch repair:General function prediction only:General function prediction only:Function unknown:Function unknown:yjeF_cterm:sfsA:hemN_rel:cobalto_cobN:RNase_Z:RNA processing:Replication and Repair:Metabolism:Metabolism:Genetic Information Processing:Global:Other:RNA processing:General:Heme, porphyrin, and cobalamin:Regulatory functions:Transcription:Unknown function:Biosynthesis of cofactors, prosthetic groups, and carriers:Information storage and processing:Metabolism:Poorly characterized:Metabolism:Metabolism of Cofactors and Vitamins:Genetic Information Processing:Replication and Repair:Global:Metabolism:Regulatory functions:Other:Transcription:Metabolism of Cofactors and Vitamins:Unknown function:General:Biosynthesis of cofactors, prosthetic groups, and carriers:Heme, porphyrin, and cobalamin:Information storage and processing:Metabolism:Poorly characterized" 177 "Energy production and conversion:Energy production and conversion:3,4-dihydroxy-2-butanone 4-phosphate synthase:Glycerol dehydrogenase and related enzymes:Glutaredoxin and related proteins:Predicted nucleoside-diphosphate-sugar epimerases:NAD(FAD)-utilizing enzyme possibly involved in translation:Peroxiredoxin:Predicted oxidoreductases of the aldo/keto reductase family:Uncharacterized conserved protein:Pyridoxal phosphate biosynthesis protein:Methylase involved in ubiquinone/menaquinone biosynthesis:Uncharacterized protein conserved in bacteria:Uncharacterized protein conserved in bacteria:Uncharacterized protein conserved in bacteria:Superfamily II RNA helicase:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Replication, recombination and repair:Replication, recombination and repair:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Purine metabolism:Pyrimidine metabolism:Glycerolipid metabolism:Riboflavin metabolism:Vitamin B6 metabolism:Metabolic pathways:DNA replication:Mismatch repair:Homologous recombination:General function prediction only:General function prediction only:Function unknown:Function unknown:gid_trmFO:ribA:pdxA:TIGR00726:intein_Cterm:toxin_Txe_YoeB:GRX_bact:Protein synthesis:Nucleotide Metabolism:Metabolism of Cofactors and Vitamins:Replication and Repair:Metabolism:Metabolism:Genetic Information Processing:Global:Electron transport:tRNA and rRNA base modification:Other:General:Pyridoxine:Riboflavin, FMN, and FAD:Energy metabolism:Protein synthesis:Mobile and extrachromosomal element functions:Unknown function:Biosynthesis of cofactors, prosthetic groups, and carriers:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Lipid Metabolism:Nucleotide Metabolism:Metabolism of Cofactors and Vitamins:Genetic Information Processing:Replication and Repair:Global:Metabolism:Energy metabolism:Electron transport:Lipid Metabolism:tRNA and rRNA base modification:Mobile and extrachromosomal element functions:Other:Unknown function:General:Biosynthesis of cofactors, prosthetic groups, and carriers:Pyridoxine:Riboflavin, FMN, and FAD:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized" 178 "Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase:Predicted S-adenosylmethionine-dependent methyltransferase:Predicted hydrolase of the alpha/beta-hydrolase fold:SAM-dependent methyltransferases:Thiamine monophosphate kinase:Arsenite efflux pump ACR3 and related permeases:Cobalamin biosynthesis protein CobD/CbiB:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Glycolysis / Gluconeogenesis:Thiamine metabolism:Porphyrin and chlorophyll metabolism:Metabolic pathways:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Secondary metabolites biosynthesis, transport and catabolism:Secondary metabolites biosynthesis, transport and catabolism:General function prediction only:General function prediction only:TIGR00091:cobD:acr3:thiL:GAPDH-I:Metabolism:Metabolism:Biosynthesis of cofactors, prosthetic groups, and carriers:Transport and binding proteins:Energy metabolism:Glycolysis/gluconeogenesis:Protein synthesis:tRNA and rRNA base modification:Transport and binding proteins:Anions:Biosynthesis of cofactors, prosthetic groups, and carriers:Heme, porphyrin, and cobalamin:Thiamine:Metabolism:Poorly characterized:Protein synthesis:Energy metabolism:Thiamine:Heme, porphyrin, and cobalamin:Carbohydrate Metabolism:Anions:tRNA and rRNA base modification:Glycolysis/gluconeogenesis:Global:Metabolism:Metabolism:Carbohydrate Metabolism:Metabolism of Cofactors and Vitamins:Metabolism of Cofactors and Vitamins:Metabolism:Poorly characterized:Global" 179 "Energy production and conversion:Energy production and conversion:NhaP-type Na+/H+ and K+/H+ antiporters:Pseudouridine synthase:Folate-dependent phosphoribosylglycinamide formyltransferase PurN:Cytosine deaminase and related metal-dependent hydrolases:Glycosyltransferase:Superfamily II DNA helicase:Predicted hydrolases of the HAD superfamily:Transcriptional regulator:Mg2+ and Co2+ transporters:tRNA nucleotidyltransferase/poly(A) polymerase:Predicted kinase:Predicted amidophosphoribosyltransferases:Sugar (pentulose and hexulose) kinases:Phosphomannomutase:Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs:Cytochrome bd-type quinol oxidase, subunit 1:Predicted alternative thymidylate synthase:Predicted transcriptional regulators:Methionine synthase I, cobalamin-binding domain:4-alpha-glucanotransferase:Pirin-related protein:Methylase involved in ubiquinone/menaquinone biosynthesis:Predicted membrane protein:Uncharacterized conserved protein:Fructosamine-3-kinase:Putative N-acetylmannosamine-6-phosphate epimerase:Phage-related lysozyme (muraminidase):L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily:Amino acid transport and metabolism:Amino acid transport and metabolism:Nucleotide transport and metabolism:Nucleotide transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Fructose and mannose metabolism:Ubiquinone and other terpenoid-quinone biosynthesis:Oxidative phosphorylation:Purine metabolism:Pyrimidine metabolism:Cysteine and methionine metabolism:Arginine and proline metabolism:Starch and sucrose metabolism:Amino sugar and nucleotide sugar metabolism:One carbon pool by folate:Metabolic pathways:Biosynthesis of secondary metabolites:RNA degradation:General function prediction only:General function prediction only:Function unknown:Function unknown:malQ:corA:TruB:recQ_fam:PurN:HAD-SF-IIB:menC_gamma/gm+:metH:thyX:DNA metabolism:DNA replication, recombination, and repair:Protein synthesis:tRNA and rRNA base modification:Transport and binding proteins:Cations and iron carrying compounds:Unknown function:Enzymes of unknown specificity:Amino acid biosynthesis:Aspartate family:Biosynthesis of cofactors, prosthetic groups, and carriers:Menaquinone and ubiquinone:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Global:Folding Sorting and Degradation:Genetic Information Processing:Metabolism of Cofactors and Vitamins:Amino Acid Metabolism:Nucleotide Metabolism:Energy Metabolism:Carbohydrate Metabolism:Metabolism:Poorly characterized:Metabolism:Cellular processes and signaling:Information storage and processing:Biosynthesis of cofactors, prosthetic groups, and carriers:Amino acid biosynthesis:Unknown function:Transport and binding proteins:Protein synthesis:DNA metabolism:Purines, pyrimidines, nucleosides, and nucleotides:Energy metabolism:Menaquinone and ubiquinone:Aspartate family:Enzymes of unknown specificity:Cations and iron carrying compounds:tRNA and rRNA base modification:DNA replication, recombination, and repair:2'-Deoxyribonucleotide metabolism:Purine ribonucleotide biosynthesis:Biosynthesis and degradation of polysaccharides:Global:Genetic Information Processing:Metabolism:Metabolism:Folding Sorting and Degradation:Metabolism of Cofactors and Vitamins:Amino Acid Metabolism:Nucleotide Metabolism:Carbohydrate Metabolism:Energy Metabolism:Energy metabolism:Biosynthesis and degradation of polysaccharides:Purines, pyrimidines, nucleosides, and nucleotides:Purine ribonucleotide biosynthesis:2'-Deoxyribonucleotide metabolism" 180 "Energy production and conversion:Energy production and conversion:Uncharacterized flavoproteins:ATPases of the AAA+ class:Universal stress protein UspA and related nucleotide-binding proteins:cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases:Predicted GTPases:Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains:Type II secretory pathway, component PulF:Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB:Tfp pilus assembly protein, pilus retraction ATPase PilT:Transcription:Transcription:Cell motility:Cell motility:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Photosynthesis:Metabolic pathways:General function prediction only:General function prediction only:Signal transduction mechanisms:Signal transduction mechanisms:TIGR00244:psbA:pilT_fam:TIGR02450:GTPase_YlqF:Intracellular trafficking, secretion, and vesicular transport:Intracellular trafficking, secretion, and vesicular transport:Metabolism:Poorly characterized:Protein synthesis:Metabolism:Metabolism:Global:Photosynthesis:DNA interactions:Other:Chemotaxis and motility:Energy metabolism:Regulatory functions:Protein synthesis:Cellular processes:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Energy Metabolism:Global:Metabolism:Energy metabolism:Photosynthesis:Regulatory functions:DNA interactions:Energy Metabolism:Other:Cellular processes:Chemotaxis and motility:Information storage and processing:Cellular processes and signaling" 181 "Energy production and conversion:Energy production and conversion:Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase]:Predicted Zn-dependent proteases and their inactivated homologs:Ribosomal protein S6:NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductases:Glycine cleavage system H protein (lipoate-binding):Putative GTPases (G3E family):Single-stranded DNA-binding protein:Preprotein translocase subunit SecA (ATPase, RNA helicase):Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit:Uncharacterized homolog of plant Iojap protein:Chemotaxis signal transduction protein:NADH:ubiquinone oxidoreductase subunit 3 (chain A):NADH:ubiquinone oxidoreductase 27 kD subunit:Membrane protein TerC, possibly involved in tellurium resistance:Deoxyxylulose-5-phosphate synthase:Preprotein translocase subunit SecG:Uncharacterized protein conserved in bacteria:Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain:DNA-binding HTH domain-containing proteins:Amino acid transport and metabolism:Amino acid transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Cell motility:Cell motility:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Oxidative phosphorylation:Photosynthesis:Purine metabolism:Pyrimidine metabolism:Valine leucine and isoleucine biosynthesis:Butanoate metabolism:C5-Branched dibasic acid metabolism:Pantothenate and CoA biosynthesis:Terpenoid backbone biosynthesis:Aminoacyl-tRNA biosynthesis:Metabolic pathways:Biosynthesis of secondary metabolites:Two-component system:Ribosome:RNA polymerase:DNA replication:Protein export:Bacterial secretion system:Mismatch repair:Homologous recombination:General function prediction only:General function prediction only:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:iojap_ybeB:acolac_lg:gatC:S6:dxs:gcvH:ssb:secG:secA:nuoB_fam:PS_II_psb27:R_switched_YkoY:Intracellular trafficking, secretion, and vesicular transport:Intracellular trafficking, secretion, and vesicular transport:Environmental Information Processing:Membrane Transport:Biosynthesis of cofactors, prosthetic groups, and carriers:Signal Transduction:Amino acid biosynthesis:Global:Metabolism:Unknown function:Protein fate:Energy metabolism:Amino acids and amines:Electron transport:Photosynthesis:DNA metabolism:DNA replication, recombination, and repair:Protein synthesis:tRNA aminoacylation:Ribosomal proteins: synthesis and modification:Protein fate:Protein and peptide secretion and trafficking:Unknown function:General:Amino acid biosynthesis:Pyruvate family:Biosynthesis of cofactors, prosthetic groups, and carriers:Thiamine:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Protein synthesis:DNA metabolism:Energy metabolism:Thiamine:Pyruvate family:General:Protein and peptide secretion and trafficking:Ribosomal proteins: synthesis and modification:tRNA aminoacylation:DNA replication, recombination, and repair:Carbohydrate Metabolism:Photosynthesis:Electron transport:Amino acids and amines:Global:Environmental Information Processing:Genetic Information Processing:Metabolism:Metabolism:Signal Transduction:Membrane Transport:Replication and Repair:Folding Sorting and Degradation:Translation:Transcription:Metabolism of Terpenoids and Polyketides:Metabolism of Cofactors and Vitamins:Amino Acid Metabolism:Nucleotide Metabolism:Amino Acid Metabolism:Energy Metabolism:Nucleotide Metabolism:Metabolism of Cofactors and Vitamins:Energy Metabolism:Metabolism of Terpenoids and Polyketides:Carbohydrate Metabolism:Genetic Information Processing:Transcription:Metabolism:Translation:Poorly characterized:Metabolism:Folding Sorting and Degradation:Cellular processes and signaling:Replication and Repair:Information storage and processing" 182 "Adenylate kinase and related kinases:cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases:Tfp pilus assembly protein PilN:Fatty acid desaturase:Type II secretory pathway, component HofQ:Tfp pilus assembly protein, ATPase PilM:Ornithine/acetylornithine aminotransferase:Amino acid transport and metabolism:Amino acid transport and metabolism:Nucleotide transport and metabolism:Nucleotide transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Cell motility:Cell motility:Photosynthesis:Arginine and proline metabolism:Carotenoid biosynthesis:Metabolic pathways:Biosynthesis of secondary metabolites:Signal transduction mechanisms:Signal transduction mechanisms:argD:psbA:pilM:PS_I_psaC:Intracellular trafficking, secretion, and vesicular transport:Intracellular trafficking, secretion, and vesicular transport:Metabolism of Terpenoids and Polyketides:Amino Acid Metabolism:Energy Metabolism:Energy metabolism:Photosynthesis:Cellular processes and signaling:Metabolism:Energy Metabolism:Metabolism:Metabolism:Cellular processes and signaling:Energy metabolism:Photosynthesis:Global:Metabolism:Metabolism:Metabolism of Terpenoids and Polyketides:Metabolism:Amino Acid Metabolism:Global" 183 "Cell division GTPase:Translation initiation factor 3 (IF-3):GMP synthase - Glutamine amidotransferase domain:cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases:ABC-type transport system involved in resistance to organic solvents, permease component:UDP-N-acetylmuramate-alanine ligase:UDP-N-acetylmuramate dehydrogenase:S-adenosylmethionine decarboxylase:Uncharacterized conserved protein:Serine phosphatase RsbU, regulator of sigma subunit:Tfp pilus assembly protein PilF:Predicted membrane protein:Cell cycle control, cell division, chromosome partitioning:Cell cycle control, cell division, chromosome partitioning:Amino acid transport and metabolism:Amino acid transport and metabolism:Nucleotide transport and metabolism:Nucleotide transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Cell motility:Cell motility:Cysteine and methionine metabolism:Arginine and proline metabolism:D-Glutamine and D-glutamate metabolism:Amino sugar and nucleotide sugar metabolism:Peptidoglycan biosynthesis:Metabolic pathways:RNA degradation:Secondary metabolites biosynthesis, transport and catabolism:Secondary metabolites biosynthesis, transport and catabolism:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:TIGR00056:ftsZ:infC:murB:murC:SAM_DCase_Bsu:Intracellular trafficking, secretion, and vesicular transport:Intracellular trafficking, secretion, and vesicular transport:Polyamine biosynthesis:Amino Acid Metabolism:Metabolism of Other Amino Acids:Glycan Biosynthesis and Metabolism:Folding Sorting and Degradation:Metabolism:Metabolism:Genetic Information Processing:Global:Polyamine biosynthesis:Translation factors:Cell division:Conserved:Biosynthesis and degradation of murein sacculus and peptidoglycan:Central intermediary metabolism:Protein synthesis:Cellular processes:Hypothetical proteins:Cell envelope:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Carbohydrate Metabolism:Amino Acid Metabolism:Metabolism of Other Amino Acids:Glycan Biosynthesis and Metabolism:Genetic Information Processing:Folding Sorting and Degradation:Global:Metabolism:Central intermediary metabolism:Carbohydrate Metabolism:Protein synthesis:Translation factors:Cellular processes:Cell division:Hypothetical proteins:Conserved:Cell envelope:Biosynthesis and degradation of murein sacculus and peptidoglycan:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized" 184 "Predicted GTPase, probable translation factor:Pentose-5-phosphate-3-epimerase:Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain:Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase:Glycogen synthase:Anthranilate/para-aminobenzoate synthases component II:Uncharacterized protein involved in formation of curli polymers:Beta-propeller domains of methanol dehydrogenase type:Predicted Zn-dependent hydrolases of the beta-lactamase fold:Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase:Amino acid transport and metabolism:Amino acid transport and metabolism:Nucleotide transport and metabolism:Nucleotide transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Glycolysis / Gluconeogenesis:Pentose phosphate pathway:Pentose and glucuronate interconversions:Purine metabolism:Valine leucine and isoleucine biosynthesis:Phenylalanine tyrosine and tryptophan biosynthesis:Starch and sucrose metabolism:Carbon fixation in photosynthetic organisms:Porphyrin and chlorophyll metabolism:Metabolic pathways:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:General function prediction only:General function prediction only:TIGR00092:trpG_papA:rpe:GAPDH-I:FGAM_synth_I:glgA:Global:Metabolism:Poorly characterized:Metabolism:Cellular processes and signaling:Energy metabolism:Glycolysis/gluconeogenesis:Pentose phosphate pathway:Biosynthesis and degradation of polysaccharides:Purines, pyrimidines, nucleosides, and nucleotides:Purine ribonucleotide biosynthesis:Unknown function:General:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Information storage and processing:Unknown function:Purines, pyrimidines, nucleosides, and nucleotides:Energy metabolism:General:Purine ribonucleotide biosynthesis:Carbohydrate Metabolism:Biosynthesis and degradation of polysaccharides:Pentose phosphate pathway:Glycolysis/gluconeogenesis:Global:Metabolism:Metabolism:Metabolism of Cofactors and Vitamins:Amino Acid Metabolism:Nucleotide Metabolism:Nucleotide Metabolism:Energy Metabolism:Amino Acid Metabolism:Energy Metabolism:Carbohydrate Metabolism:Metabolism of Cofactors and Vitamins:Metabolism" 185 "Predicted amidohydrolase:Glycosyltransferase:Nucleoside-diphosphate-sugar epimerases:Cation transport ATPase:ABC-type dipeptide/oligopeptide/nickel transport systems, permease components:Holliday junction resolvasome, DNA-binding subunit:RNase PH:dTDP-D-glucose 4,6-dehydratase:Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon):Transcriptional regulators:Predicted flavoprotein involved in K+ transport:Biotin synthase-related enzyme:Predicted carboxypeptidase:Uncharacterized iron-regulated protein:Amino acid transport and metabolism:Amino acid transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Tryptophan metabolism:Cyanoamino acid metabolism:Starch and sucrose metabolism:Amino sugar and nucleotide sugar metabolism:Aminobenzoate degradation:Nitrogen metabolism:Metabolic pathways:Microbial metabolism in diverse environments:ABC transporters:Homologous recombination:General function prediction only:General function prediction only:ruvA:ATPase_P-type:RNasePH:CDP_4_6_dhtase:G1P_cyt_trans:rSAM_MSMEG_0568:MSMEG_0572_fam:MSMEG_0567_GNAT:MSMEG_0569_nitr:nitrile_sll0784:Metabolism:Metabolism:Cellular processes and signaling:DNA metabolism:DNA replication, recombination, and repair:Transcription:RNA processing:Unknown function:Enzymes of unknown specificity:Cell envelope:Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Information storage and processing:Cell envelope:Unknown function:Transcription:DNA metabolism:Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides:Enzymes of unknown specificity:RNA processing:DNA replication, recombination, and repair:Global:Environmental Information Processing:Genetic Information Processing:Metabolism:Metabolism:Membrane Transport:Replication and Repair:Xenobiotics Biodegradation and Metabolism:Metabolism of Other Amino Acids:Amino Acid Metabolism:Energy Metabolism:Energy Metabolism:Amino Acid Metabolism:Carbohydrate Metabolism:Metabolism of Other Amino Acids:Metabolism:Xenobiotics Biodegradation and Metabolism:Poorly characterized:Genetic Information Processing:Replication and Repair:Environmental Information Processing:Membrane Transport:Carbohydrate Metabolism:Global" 186 "Sulfite reductase, beta subunit (hemoprotein):ATPases involved in chromosome partitioning:Exoribonuclease R:CDP-diglyceride synthetase:Predicted hydrolase of the metallo-beta-lactamase superfamily:ABC-type dipeptide/oligopeptide/nickel transport systems, permease components:Predicted unusual protein kinase:cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases:UDP-N-acetylglucosamine enolpyruvyl transferase:UDP-3-O-acyl-N-acetylglucosamine deacetylase:Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases):ABC-type sulfate/molybdate transport systems, ATPase component:Ribonucleases G and E:ABC-type sulfate transport system, periplasmic component:Phosphosulfolactate phosphohydrolase and related enzymes:Uncharacterized protein conserved in bacteria:Uncharacterized conserved protein:Hydrogenase/urease accessory protein:ABC-type sulfate transport system, permease component:Outer membrane protein/protective antigen OMA87:Cell cycle control, cell division, chromosome partitioning:Cell cycle control, cell division, chromosome partitioning:Amino acid transport and metabolism:Amino acid transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Purine metabolism:Selenocompound metabolism:Amino sugar and nucleotide sugar metabolism:Lipopolysaccharide biosynthesis:Peptidoglycan biosynthesis:Glycerophospholipid metabolism:Methane metabolism:Sulfur metabolism:Metabolic pathways:Microbial metabolism in diverse environments:ABC transporters:RNA degradation:Secondary metabolites biosynthesis, transport and catabolism:Secondary metabolites biosynthesis, transport and catabolism:General function prediction only:General function prediction only:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:lpxC:MG423:RNaseEG:3a0106s01:3a0106s02:3a0106s03:murA:apt:sir:Central intermediary metabolism:Sulfur metabolism:Purines, pyrimidines, nucleosides, and nucleotides:Salvage of nucleosides and nucleotides:Transcription:Degradation of RNA:Transport and binding proteins:Anions:Hypothetical proteins:Conserved:Cell envelope:Biosynthesis and degradation of murein sacculus and peptidoglycan:Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Cell envelope:Hypothetical proteins:Transport and binding proteins:Transcription:Purines, pyrimidines, nucleosides, and nucleotides:Central intermediary metabolism:Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides:Biosynthesis and degradation of murein sacculus and peptidoglycan:Conserved:Anions:Degradation of RNA:Salvage of nucleosides and nucleotides:Sulfur metabolism:Global:Environmental Information Processing:Genetic Information Processing:Metabolism:Metabolism:Membrane Transport:Folding Sorting and Degradation:Glycan Biosynthesis and Metabolism:Metabolism of Other Amino Acids:Nucleotide Metabolism:Lipid Metabolism:Lipid Metabolism:Energy Metabolism:Energy Metabolism:Nucleotide Metabolism:Carbohydrate Metabolism:Metabolism of Other Amino Acids:Metabolism:Glycan Biosynthesis and Metabolism:Poorly characterized:Metabolism:Genetic Information Processing:Folding Sorting and Degradation:Environmental Information Processing:Membrane Transport:Carbohydrate Metabolism:Global:Metabolism:Cellular processes and signaling:Information storage and processing" 187 "Energy production and conversion:Energy production and conversion:Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase:Anthranilate/para-aminobenzoate synthases component I:Folate-dependent phosphoribosylglycinamide formyltransferase PurN:Polyferredoxin:Predicted ATPase:Glycosyltransferase:Phosphopantothenoylcysteine synthetase/decarboxylase:Zn-dependent hydrolases, including glyoxylases:Superfamily II DNA helicase:Predicted hydrolases of the HAD superfamily:ABC-type antimicrobial peptide transport system, permease component:Organic radical activating enzymes:Predicted PP-loop superfamily ATPase:Predicted kinase:Apolipoprotein N-acyltransferase:Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs:Transglutaminase-like enzymes, putative cysteine proteases:Transcriptional regulator:Predicted alternative thymidylate synthase:Predicted transcriptional regulators:Predicted oxidoreductases of the aldo/keto reductase family:Penicillin V acylase and related amidases:Transposase and inactivated derivatives:Phage-related lysozyme (muraminidase):Predicted membrane protein:Amino acid transport and metabolism:Amino acid transport and metabolism:Nucleotide transport and metabolism:Nucleotide transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Secondary bile acid biosynthesis:Purine metabolism:Pyrimidine metabolism:Pyruvate metabolism:One carbon pool by folate:Pantothenate and CoA biosynthesis:Folate biosynthesis:Metabolic pathways:Biosynthesis of secondary metabolites:RNA degradation:General function prediction only:General function prediction only:Function unknown:Function unknown:lytR_cpsA_psr:TIGR00364:coaBC_dfp:lnt:pabB:recQ_fam:PurN:devC:HAD-SF-IIB:thyX:Defense mechanisms:Defense mechanisms:Regulatory functions:Other:DNA metabolism:DNA replication, recombination, and repair:Protein fate:Protein modification and repair:Transport and binding proteins:Other:Unknown function:Enzymes of unknown specificity:General:Biosynthesis of cofactors, prosthetic groups, and carriers:Folic acid:Pantothenate and coenzyme A:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism of Cofactors and Vitamins:Nucleotide Metabolism:Lipid Metabolism:Carbohydrate Metabolism:Metabolism:Poorly characterized:Metabolism:Cellular processes and signaling:Information storage and processing:Biosynthesis of cofactors, prosthetic groups, and carriers:Unknown function:Transport and binding proteins:Protein fate:DNA metabolism:Regulatory functions:Purines, pyrimidines, nucleosides, and nucleotides:Pantothenate and coenzyme A:Folic acid:General:Enzymes of unknown specificity:Other:Protein modification and repair:DNA replication, recombination, and repair:Other:2'-Deoxyribonucleotide metabolism:Purine ribonucleotide biosynthesis:Global:Genetic Information Processing:Metabolism:Metabolism:Folding Sorting and Degradation:Metabolism of Cofactors and Vitamins:Nucleotide Metabolism:Metabolism:Lipid Metabolism:Global:Folding Sorting and Degradation:Genetic Information Processing:Carbohydrate Metabolism:Purines, pyrimidines, nucleosides, and nucleotides:Purine ribonucleotide biosynthesis:2'-Deoxyribonucleotide metabolism" 188 "Guanylate kinase:Putative translation initiation inhibitor, yjgF family:Recombinational DNA repair protein (RecF pathway):Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family:Anthranilate phosphoribosyltransferase:5,10-methylenetetrahydrofolate reductase:D-alanine-D-alanine ligase and related ATP-grasp enzymes:Mg/Co/Ni transporter MgtE (contains CBS domain):Predicted membrane protein:Amino acid transport and metabolism:Amino acid transport and metabolism:Nucleotide transport and metabolism:Nucleotide transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Replication, recombination and repair:Replication, recombination and repair:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Purine metabolism:Phenylalanine tyrosine and tryptophan biosynthesis:D-Alanine metabolism:Streptomycin biosynthesis:Peptidoglycan biosynthesis:Inositol phosphate metabolism:Aminoacyl-tRNA biosynthesis:Metabolic pathways:Biosynthesis of secondary metabolites:Homologous recombination:Function unknown:Function unknown:mreC:mgtE:proS_fam_II:recR:D_ala_D_alaTIGR:trpD:guanyl_kin:TIGR03943:DNA replication, recombination, and repair:Protein synthesis:tRNA aminoacylation:Transport and binding proteins:Cations and iron carrying compounds:Amino acid biosynthesis:Aromatic amino acid family:Cell envelope:Biosynthesis and degradation of murein sacculus and peptidoglycan:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Genetic Information Processing:Nucleotide Metabolism:Amino Acid Metabolism:Metabolism of Other Amino Acids:Glycan Biosynthesis and Metabolism:Biosynthesis of Other Secondary Metabolites:Translation:Replication and Repair:Metabolism:Metabolism:Genetic Information Processing:Global:Nucleotide and nucleoside interconversions:DNA replication, recombination, and repair:tRNA aminoacylation:Cations and iron carrying compounds:Aromatic amino acid family:Biosynthesis and degradation of murein sacculus and peptidoglycan:Purines, pyrimidines, nucleosides, and nucleotides:DNA metabolism:Protein synthesis:Transport and binding proteins:Amino acid biosynthesis:Cell envelope:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Carbohydrate Metabolism:Nucleotide Metabolism:Amino Acid Metabolism:Metabolism of Other Amino Acids:Glycan Biosynthesis and Metabolism:Biosynthesis of Other Secondary Metabolites:Carbohydrate Metabolism:Translation:Replication and Repair:Global:Metabolism:Purines, pyrimidines, nucleosides, and nucleotides:Nucleotide and nucleoside interconversions:DNA metabolism" 189 "Ribosome-associated protein Y (PSrp-1):Predicted membrane protein:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Function unknown:Function unknown:yfiA:Poorly characterized:Protein synthesis:Protein synthesis:Information storage and processing:Poorly characterized:Translation factors:Translation factors:Information storage and processing" 190 "Energy production and conversion:Energy production and conversion:Dihydroorotate dehydrogenase:Glycine cleavage system T protein (aminomethyltransferase):Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit:Transcriptional regulator:Predicted nucleotidyltransferases:Uncharacterized protein conserved in bacteria:Amino acid transport and metabolism:Amino acid transport and metabolism:Nucleotide transport and metabolism:Nucleotide transport and metabolism:Transcription:Transcription:Pyrimidine metabolism:Glycine serine and threonine metabolism:One carbon pool by folate:Nitrogen metabolism:Metabolic pathways:General function prediction only:General function prediction only:Function unknown:Function unknown:gcvT:pyruv_ox_red:IV_pilin_GFxxxE:Metabolism:Poorly characterized:Metabolism of Cofactors and Vitamins:Nucleotide Metabolism:Amino Acid Metabolism:Metabolism of Cofactors and Vitamins:Metabolism:Metabolism:Global:Amino acids and amines:Protein and peptide secretion and trafficking:Energy metabolism:Protein fate:Information storage and processing:Metabolism:Poorly characterized:Metabolism:Energy Metabolism:Nucleotide Metabolism:Amino Acid Metabolism:Energy Metabolism:Global:Metabolism:Energy metabolism:Amino acids and amines:Protein fate:Protein and peptide secretion and trafficking:Information storage and processing" 191 "NAD-dependent DNA ligase (contains BRCT domain type II):Membrane carboxypeptidase (penicillin-binding protein):2-keto-3-deoxy-6-phosphogluconate aldolase:Predicted glycosyltransferases:Multiple antibiotic transporter:Predicted nucleic acid-binding protein, contains PIN domain:Predicted O-methyltransferase:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Replication, recombination and repair:Replication, recombination and repair:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Pentose phosphate pathway:Pentose and glucuronate interconversions:Arginine and proline metabolism:Phenylalanine metabolism:Glyoxylate and dicarboxylate metabolism:Metabolic pathways:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:DNA replication:Base excision repair:Nucleotide excision repair:Mismatch repair:General function prediction only:General function prediction only:TIGR00427:dnlj:eda:PBP_1a_fam:Intracellular trafficking, secretion, and vesicular transport:Intracellular trafficking, secretion, and vesicular transport:Carbohydrate Metabolism:Global:Metabolism:Unknown function:DNA metabolism:Energy metabolism:Energy metabolism:Entner-Doudoroff:DNA metabolism:DNA replication, recombination, and repair:Unknown function:General:Cell envelope:Biosynthesis and degradation of murein sacculus and peptidoglycan:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Biosynthesis and degradation of murein sacculus and peptidoglycan:General:DNA replication, recombination, and repair:Entner-Doudoroff:Global:Genetic Information Processing:Metabolism:Metabolism:Replication and Repair:Poorly characterized:Amino Acid Metabolism:Metabolism:Carbohydrate Metabolism:Metabolism:Cellular processes and signaling:Information storage and processing:Amino Acid Metabolism:Genetic Information Processing:Replication and Repair:Cell envelope" 192 "NAD synthase:Type I restriction-modification system methyltransferase subunit:Molybdopterin biosynthesis enzyme:Phosphate/sulphate permeases:Predicted amidohydrolase:Predicted GTPase:Superfamily II DNA/RNA helicases, SNF2 family:Molybdopterin-guanine dinucleotide biosynthesis protein A:Predicted oxidoreductases of the aldo/keto reductase family:Selenophosphate synthetase-related proteins:Biotin synthase-related enzyme:Uncharacterized protein related to deoxyribodipyrimidine photolyase:Phage protein U:Molybdopterin-binding protein:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Tryptophan metabolism:Cyanoamino acid metabolism:Aminobenzoate degradation:Nicotinate and nicotinamide metabolism:Nitrogen metabolism:Metabolic pathways:Microbial metabolism in diverse environments:General function prediction only:General function prediction only:small_GTP:nadE:Mop:rSAM_MSMEG_0568:MSMEG_0572_fam:MSMEG_0567_GNAT:nitrile_sll0784:AIR_rel_sll0787:Defense mechanisms:Defense mechanisms:Transport and binding proteins:Amino Acid Metabolism:Metabolism of Other Amino Acids:Metabolism of Cofactors and Vitamins:Xenobiotics Biodegradation and Metabolism:Metabolism:Metabolism:Global:Anions:Enzymes of unknown specificity:General:Pyridine nucleotides:Transport and binding proteins:Unknown function:Biosynthesis of cofactors, prosthetic groups, and carriers:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Energy Metabolism:Amino Acid Metabolism:Metabolism of Other Amino Acids:Metabolism of Cofactors and Vitamins:Xenobiotics Biodegradation and Metabolism:Global:Metabolism:Energy Metabolism:Anions:Unknown function:Enzymes of unknown specificity:General:Biosynthesis of cofactors, prosthetic groups, and carriers:Pyridine nucleotides:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized" 193 "ATPase involved in DNA repair:Acetyltransferases:RecG-like helicase:Multidrug resistance efflux pump:Arginine/lysine/ornithine decarboxylases:Uncharacterized FAD-dependent dehydrogenases:Uncharacterized protein conserved in bacteria:Amino acid transport and metabolism:Amino acid transport and metabolism:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Lysine degradation:Metabolic pathways:Biosynthesis of secondary metabolites:Homologous recombination:General function prediction only:General function prediction only:Function unknown:Function unknown:recG:Defense mechanisms:Defense mechanisms:DNA replication, recombination, and repair:Replication and Repair:Metabolism:Metabolism:Genetic Information Processing:Global:DNA replication, recombination, and repair:DNA metabolism:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Amino Acid Metabolism:Genetic Information Processing:Replication and Repair:Global:Metabolism:DNA metabolism:Amino Acid Metabolism:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized" 194 "Energy production and conversion:Energy production and conversion:Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase:F0F1-type ATP synthase, subunit a:ADP-glucose pyrophosphorylase:Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2:Ribosomal protein S4 and related proteins:Uncharacterized membrane-associated protein:Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily:Rieske Fe-S protein:N-acetylmuramoyl-L-alanine amidase:NADH:ubiquinone oxidoreductase subunit 2 (chain N):NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit:Sec-independent protein secretion pathway components:Ribulose 1,5-bisphosphate carboxylase, large subunit:Tfp pilus assembly protein PilF:Carbon dioxide concentrating mechanism/carboxysome shell protein:Amino acid transport and metabolism:Amino acid transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Cell motility:Cell motility:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Oxidative phosphorylation:Photosynthesis:Photosynthesis - antenna proteins:Valine leucine and isoleucine degradation:Valine leucine and isoleucine biosynthesis:Starch and sucrose metabolism:Amino sugar and nucleotide sugar metabolism:Glyoxylate and dicarboxylate metabolism:Carbon fixation in photosynthetic organisms:Pantothenate and CoA biosynthesis:Metabolic pathways:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Ribosome:Protein export:Bacterial secretion system:Sulfur relay system:Secondary metabolites biosynthesis, transport and catabolism:Secondary metabolites biosynthesis, transport and catabolism:General function prediction only:General function prediction only:Function unknown:Function unknown:rpsD_bact:ilvE_I:ATP_synt_6_or_A:tatAE:NDH_I_N:NDH_I_L:glgC:Intracellular trafficking, secretion, and vesicular transport:Intracellular trafficking, secretion, and vesicular transport:Metabolism:Translation:Genetic Information Processing:Metabolism of Cofactors and Vitamins:Amino Acid Metabolism:Energy Metabolism:Carbohydrate Metabolism:Metabolism:Carbohydrate Metabolism:Energy metabolism:ATP-proton motive force interconversion:Electron transport:Biosynthesis and degradation of polysaccharides:Protein synthesis:Ribosomal proteins: synthesis and modification:Protein fate:Protein and peptide secretion and trafficking:Amino acid biosynthesis:Pyruvate family:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Poorly characterized:Metabolism:Cellular processes and signaling:Information storage and processing:Amino acid biosynthesis:Protein fate:Protein synthesis:Energy metabolism:Pyruvate family:Protein and peptide secretion and trafficking:Ribosomal proteins: synthesis and modification:Biosynthesis and degradation of polysaccharides:Electron transport:ATP-proton motive force interconversion:Global:Environmental Information Processing:Genetic Information Processing:Metabolism:Metabolism:Membrane Transport:Folding Sorting and Degradation:Translation:Metabolism of Cofactors and Vitamins:Amino Acid Metabolism:Environmental Information Processing:Energy Metabolism:Membrane Transport:Folding Sorting and Degradation:Global" 195 "Ribosomal protein L11:Ribosomal protein L1:Ribosomal protein S5:Ribosomal protein S13:Ribosomal protein S11:Pseudouridylate synthase:Ribosomal protein L13:Ribosomal protein S9:Ribosomal protein L15:Preprotein translocase subunit SecY:DNA-directed RNA polymerase, alpha subunit/40 kD subunit:Ribosomal protein L17:Ribosomal protein L7/L12:Ribosomal protein L10:Transcription antiterminator:Ribosomal protein L31:Ribosomal protein L35:Ribosomal protein L20:Preprotein translocase subunit SecE:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:Purine metabolism:Pyrimidine metabolism:Metabolic pathways:Ribosome:RNA polymerase:Protein export:Bacterial secretion system:rpmI_bact:L17:hisT_truA:L31:L12:nusG:secE_bact:3a0501s007:rpsE_bact:rpmJ_bact:rplT_bact:rplM_bact:rplO_bact:rplA_bact:L11_bact:rpoA:bact_S13:bact_S11:Intracellular trafficking, secretion, and vesicular transport:Intracellular trafficking, secretion, and vesicular transport:Environmental Information Processing:Folding Sorting and Degradation:Translation:Transcription:Genetic Information Processing:Nucleotide Metabolism:Nucleotide Metabolism:Transcription:DNA-dependent RNA polymerase:Transcription factors:Protein synthesis:Ribosomal proteins: synthesis and modification:tRNA and rRNA base modification:Protein fate:Protein and peptide secretion and trafficking:Information storage and processing:Cellular processes and signaling:Metabolism:Cellular processes and signaling:Information storage and processing:Protein fate:Protein synthesis:Transcription:Protein and peptide secretion and trafficking:tRNA and rRNA base modification:Ribosomal proteins: synthesis and modification:Transcription factors:DNA-dependent RNA polymerase:Global:Environmental Information Processing:Genetic Information Processing:Metabolism:Metabolism:Membrane Transport:Folding Sorting and Degradation:Translation:Metabolism:Transcription:Global:Membrane Transport" 196 "Energy production and conversion:Energy production and conversion:Molecular chaperone:K+ transport systems, NAD-binding component:Deoxycytidine deaminase:Fe-S oxidoreductase:Nicotinic acid phosphoribosyltransferase:Multidrug resistance efflux pump:Cobalamin biosynthesis protein CbiD:Membrane-bound lytic murein transglycosylase:Predicted NAD/FAD-dependent oxidoreductase:Nucleotide transport and metabolism:Nucleotide transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Pyrimidine metabolism:Porphyrin and chlorophyll metabolism:Metabolic pathways:General function prediction only:General function prediction only:cbiD:Defense mechanisms:Defense mechanisms:Metabolism:Metabolism of Cofactors and Vitamins:Metabolism:Metabolism:Global:Heme, porphyrin, and cobalamin:Biosynthesis of cofactors, prosthetic groups, and carriers:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Nucleotide Metabolism:Metabolism of Cofactors and Vitamins:Global:Metabolism:Biosynthesis of cofactors, prosthetic groups, and carriers:Heme, porphyrin, and cobalamin:Cellular processes and signaling:Nucleotide Metabolism:Poorly characterized" 197 "Photosynthesis:Photosynthesis - antenna proteins:Metabolic pathways:psaA:psaB:apcB:phycocy_alpha:phycocy_beta:PS_I_psaI:Metabolism:Energy metabolism:Energy Metabolism:Photosynthesis:Metabolism:Metabolism:Global:Photosynthesis:Energy metabolism:Metabolism:Energy Metabolism:Global" 198 "Energy production and conversion:Energy production and conversion:Methionine aminopeptidase:Isopropylmalate/homocitrate/citramalate synthases:Histidinol dehydrogenase:N-formylmethionyl-tRNA deformylase:Lactoylglutathione lyase and related lyases:Acetolactate synthase, small (regulatory) subunit:ATP-dependent Zn proteases:Putative GTPases (G3E family):Thiol-disulfide isomerase and thioredoxins:Predicted GTPase:ABC-type antimicrobial peptide transport system, permease component:Preprotein translocase subunit SecA (ATPase, RNA helicase):Signal peptidase I:Thioredoxin-like proteins and domains:Protease subunit of ATP-dependent Clp proteases:Membrane protein TerC, possibly involved in tellurium resistance:Ferredoxin:Isochorismate synthase:Cobalamin biosynthesis protein CobN and related Mg-chelatases:NADH:flavin oxidoreductases, Old Yellow Enzyme family:Peptide chain release factor RF-3:ABC-type uncharacterized transport system, permease and ATPase components:Amino acid transport and metabolism:Amino acid transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Ubiquinone and other terpenoid-quinone biosynthesis:Valine leucine and isoleucine biosynthesis:Histidine metabolism:Pyruvate metabolism:Nitrotoluene degradation:Butanoate metabolism:C5-Branched dibasic acid metabolism:Pantothenate and CoA biosynthesis:Porphyrin and chlorophyll metabolism:Metabolic pathways:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:ABC transporters:Protein export:Bacterial secretion system:Secondary metabolites biosynthesis, transport and catabolism:Secondary metabolites biosynthesis, transport and catabolism:General function prediction only:General function prediction only:glyox_I:hisD:pept_deformyl:acolac_sm:small_GTP:clpP:met_pdase_I:isochor_syn:secA:leuA_bact:FtsH_fam:BchH:sigpep_I_bact:Obg_CgtA:R_switched_YkoY:Intracellular trafficking, secretion, and vesicular transport:Intracellular trafficking, secretion, and vesicular transport:Defense mechanisms:Defense mechanisms:Protein fate:Protein and peptide secretion and trafficking:Degradation of proteins, peptides, and glycopeptides:Protein modification and repair:Unknown function:General:Amino acid biosynthesis:Pyruvate family:Histidine family:Biosynthesis of cofactors, prosthetic groups, and carriers:Menaquinone and ubiquinone:Chlorophyll and bacteriochlorphyll:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Cellular processes and signaling:Information storage and processing:Biosynthesis of cofactors, prosthetic groups, and carriers:Amino acid biosynthesis:Unknown function:Protein fate:Protein synthesis:Energy metabolism:Chlorophyll and bacteriochlorphyll:Menaquinone and ubiquinone:Histidine family:Pyruvate family:General:Protein modification and repair:Degradation of proteins, peptides, and glycopeptides:Protein and peptide secretion and trafficking:Other:Other:Global:Environmental Information Processing:Genetic Information Processing:Metabolism:Metabolism:Membrane Transport:Folding Sorting and Degradation:Xenobiotics Biodegradation and Metabolism:Metabolism of Cofactors and Vitamins:Xenobiotics Biodegradation and Metabolism:Amino Acid Metabolism:Genetic Information Processing:Folding Sorting and Degradation:Metabolism of Cofactors and Vitamins:Environmental Information Processing:Membrane Transport:Amino Acid Metabolism:Carbohydrate Metabolism:Global:Metabolism:Metabolism:Poorly characterized:Metabolism:Carbohydrate Metabolism:Energy metabolism:Other:Protein synthesis:Other" 199 "tRNA-dihydrouridine synthase:Formamidopyrimidine-DNA glycosylase:Deoxyribodipyrimidine photolyase:Predicted metal-dependent phosphoesterases (PHP family):ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components:Deoxycytidine deaminase:Uncharacterized conserved protein:Uncharacterized conserved protein:Precorrin-6B methylase 1:Sporulation protein and related proteins:Cell cycle control, cell division, chromosome partitioning:Cell cycle control, cell division, chromosome partitioning:Nucleotide transport and metabolism:Nucleotide transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Replication, recombination and repair:Replication, recombination and repair:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Pyrimidine metabolism:Porphyrin and chlorophyll metabolism:Metabolic pathways:ABC transporters:Base excision repair:General function prediction only:General function prediction only:Function unknown:Function unknown:fpg:nifR3_yhdG:ntrCD:CbiE:SpoIID_LytB:photolyase_8HDF:Membrane Transport:Global:Metabolism:Environmental Information Processing:Replication and Repair:Genetic Information Processing:Metabolism of Cofactors and Vitamins:Nucleotide Metabolism:Metabolism:Nucleotide Metabolism:DNA metabolism:DNA replication, recombination, and repair:Transport and binding proteins:Other:Unknown function:General:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Poorly characterized:Metabolism:Cellular processes and signaling:Information storage and processing:Unknown function:Transport and binding proteins:DNA metabolism:General:Other:DNA replication, recombination, and repair:Global:Environmental Information Processing:Genetic Information Processing:Metabolism:Metabolism:Membrane Transport:Replication and Repair:Metabolism of Cofactors and Vitamins" 200 "GTPases - translation elongation factors:Ribosomal protein S10:Ribosomal protein S2:Ribosomal protein L11:Ribosomal protein L1:Ribosomal protein L3:Ribosomal protein L4:Ribosomal protein L23:Ribosomal protein L2:Ribosomal protein L22:Glycine/serine hydroxymethyltransferase:Ribosomal protein S19:Transcription antiterminator:Ribosomal protein L29:Translation elongation factors (GTPases):Preprotein translocase subunit SecE:Protease subunit of ATP-dependent Clp proteases:Amino acid transport and metabolism:Amino acid transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Glycine serine and threonine metabolism:Cyanoamino acid metabolism:One carbon pool by folate:Methane metabolism:Metabolic pathways:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Ribosome:Protein export:Bacterial secretion system:L29:tsf:small_GTP:nusG:secE_bact:rpsB_bact:rpmJ_bact:rplV_bact:rpsJ_bact:rpsS_bact:rplA_bact:rplB_bact:L11_bact:L3_bact:rplD_bact:Intracellular trafficking, secretion, and vesicular transport:Intracellular trafficking, secretion, and vesicular transport:Translation:Genetic Information Processing:Metabolism of Cofactors and Vitamins:Metabolism of Other Amino Acids:Amino Acid Metabolism:Energy Metabolism:Metabolism:Metabolism:Cellular processes and signaling:Information storage and processing:Energy Metabolism:Transcription:Transcription factors:Protein synthesis:Ribosomal proteins: synthesis and modification:Translation factors:Protein fate:Protein and peptide secretion and trafficking:Unknown function:General:Information storage and processing:Cellular processes and signaling:Metabolism:Unknown function:Protein fate:Protein synthesis:Transcription:General:Protein and peptide secretion and trafficking:Translation factors:Ribosomal proteins: synthesis and modification:Transcription factors:Global:Environmental Information Processing:Genetic Information Processing:Metabolism:Metabolism:Membrane Transport:Folding Sorting and Degradation:Translation:Metabolism of Cofactors and Vitamins:Metabolism of Other Amino Acids:Metabolism:Amino Acid Metabolism:Global:Membrane Transport:Environmental Information Processing:Folding Sorting and Degradation" 201 "Energy production and conversion:Energy production and conversion:Ca2+/H+ antiporter:Helicase subunit of the DNA excision repair complex:Monoamine oxidase:Hemolysins and related proteins containing CBS domains:Uncharacterized conserved protein:Uncharacterized low-complexity proteins:FOG: HEAT repeat:ABC-type transport system involved in resistance to organic solvents, periplasmic component:Arabinose efflux permease:Uncharacterized protein conserved in bacteria:Amino acid transport and metabolism:Amino acid transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Replication, recombination and repair:Replication, recombination and repair:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Photosynthesis - antenna proteins:Metabolic pathways:Nucleotide excision repair:Secondary metabolites biosynthesis, transport and catabolism:Secondary metabolites biosynthesis, transport and catabolism:General function prediction only:General function prediction only:Function unknown:Function unknown:cax:uvrb:Cations and iron carrying compounds:Replication and Repair:Metabolism:Metabolism:Genetic Information Processing:Global:DNA replication, recombination, and repair:Cations and iron carrying compounds:DNA metabolism:Transport and binding proteins:Information storage and processing:Metabolism:Poorly characterized:Metabolism:Energy Metabolism:Genetic Information Processing:Replication and Repair:Global:Metabolism:DNA metabolism:DNA replication, recombination, and repair:Transport and binding proteins:Energy Metabolism:Information storage and processing:Metabolism:Poorly characterized" 202 "Energy production and conversion:Energy production and conversion:Fructose-1,6-bisphosphatase:6-phosphogluconate dehydrogenase:Glucose-6-phosphate 1-dehydrogenase:Monoamine oxidase:NADH dehydrogenase, FAD-containing subunit:Permeases:Cbb3-type cytochrome oxidase, cytochrome c subunit:Sterol desaturase:Cbb3-type cytochrome oxidase, subunit 1:Glucose-6-P dehydrogenase subunit:Predicted membrane protein:Amino acid transport and metabolism:Amino acid transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Glycolysis / Gluconeogenesis:Pentose phosphate pathway:Fructose and mannose metabolism:Oxidative phosphorylation:Glycine serine and threonine metabolism:Arginine and proline metabolism:Histidine metabolism:Tyrosine metabolism:Phenylalanine metabolism:Tryptophan metabolism:Glutathione metabolism:Methane metabolism:Carbon fixation in photosynthetic organisms:Metabolic pathways:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:General function prediction only:General function prediction only:Function unknown:Function unknown:OpcA:zwf:gnd:Poorly characterized:Metabolism:Poorly characterized:Metabolism:Cellular processes and signaling:Protein fate:Energy metabolism:Protein folding and stabilization:Pentose phosphate pathway:Global:Metabolism:Metabolism:Metabolism of Other Amino Acids:Amino Acid Metabolism:Amino Acid Metabolism:Energy Metabolism:Energy Metabolism:Carbohydrate Metabolism:Carbohydrate Metabolism:Metabolism of Other Amino Acids:Global:Metabolism:Energy metabolism:Pentose phosphate pathway:Protein fate:Protein folding and stabilization:Cellular processes and signaling:Metabolism" 203 "Energy production and conversion:Energy production and conversion:NhaP-type Na+/H+ and K+/H+ antiporters:Excinuclease ATPase subunit:Fe-S oxidoreductase:tRNA delta(2)-isopentenylpyrophosphate transferase:Predicted unusual protein kinase:ABC-type dipeptide transport system, periplasmic component:ABC-type dipeptide/oligopeptide/nickel transport systems, permease components:Glycosyltransferases, probably involved in cell wall biogenesis:ABC-type transport system involved in multi-copper enzyme maturation, permease component:Transcriptional regulator:Uroporphyrinogen-III synthase:Methylase of polypeptide chain release factors:ABC-type uncharacterized transport system involved in gliding motility, auxiliary component:ABC-type molybdate transport system, ATPase component:Amino acid transport and metabolism:Amino acid transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Cell motility:Cell motility:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Glyoxylate and dicarboxylate metabolism:Porphyrin and chlorophyll metabolism:Metabolic pathways:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:ABC transporters:Nucleotide excision repair:General function prediction only:General function prediction only:miaA:lytR_cpsA_psr:hemK_fam:uvra:rimI:DNA metabolism:DNA replication, recombination, and repair:Protein synthesis:Ribosomal proteins: synthesis and modification:tRNA and rRNA base modification:Protein fate:Protein modification and repair:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Poorly characterized:Metabolism:Cellular processes and signaling:Information storage and processing:Protein fate:Protein synthesis:DNA metabolism:Regulatory functions:Protein modification and repair:tRNA and rRNA base modification:Ribosomal proteins: synthesis and modification:DNA replication, recombination, and repair:Other:Global:Environmental Information Processing:Genetic Information Processing:Metabolism:Metabolism:Membrane Transport:Replication and Repair:Metabolism of Cofactors and Vitamins:Metabolism of Cofactors and Vitamins:Carbohydrate Metabolism:Genetic Information Processing:Replication and Repair:Environmental Information Processing:Membrane Transport:Global:Metabolism:Carbohydrate Metabolism:Regulatory functions:Other" 204 "NhaP-type Na+/H+ and K+/H+ antiporters:Predicted hydrolase of the alpha/beta-hydrolase fold:Rhodanese-related sulfurtransferase:Thiamine monophosphate kinase:Predicted permeases:Fucose permease:2-keto-3-deoxy-6-phosphogluconate aldolase:Cobalamin biosynthesis protein CobD/CbiB:Phosphopantetheinyl transferase:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Pentose phosphate pathway:Pentose and glucuronate interconversions:Arginine and proline metabolism:Glyoxylate and dicarboxylate metabolism:Thiamine metabolism:Porphyrin and chlorophyll metabolism:Metabolic pathways:Microbial metabolism in diverse environments:General function prediction only:General function prediction only:cobD:eda:thiL:Metabolism:Global:Metabolism of Cofactors and Vitamins:Amino Acid Metabolism:Carbohydrate Metabolism:Carbohydrate Metabolism:Energy metabolism:Entner-Doudoroff:Biosynthesis of cofactors, prosthetic groups, and carriers:Heme, porphyrin, and cobalamin:Thiamine:Metabolism:Poorly characterized:Metabolism:Poorly characterized:Metabolism:Biosynthesis of cofactors, prosthetic groups, and carriers:Energy metabolism:Thiamine:Heme, porphyrin, and cobalamin:Entner-Doudoroff:Global:Metabolism:Metabolism:Metabolism of Cofactors and Vitamins:Amino Acid Metabolism" 205 "6-phosphofructokinase:Membrane protease subunits, stomatin/prohibitin homologs:Pseudouridylate synthases, 23S RNA-specific:Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily):Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold:Inactive homolog of metal-dependent proteases, putative molecular chaperone:FOG: GGDEF domain:FOG: PAS/PAC domain:Lysophospholipase:Uncharacterized protein conserved in bacteria:Uncharacterized protein conserved in bacteria:Uncharacterized copper-binding protein:Uncharacterized conserved protein:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Glycolysis / Gluconeogenesis:Pentose phosphate pathway:Fructose and mannose metabolism:Galactose metabolism:Ubiquinone and other terpenoid-quinone biosynthesis:Methane metabolism:Metabolic pathways:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:General function prediction only:General function prediction only:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:sensory_box:GGDEF:bact_YeaZ:Metabolism:Poorly characterized:Carbohydrate Metabolism:Metabolism:Poorly characterized:Metabolism:Cellular processes and signaling:Information storage and processing:Signal transduction:Regulatory functions:Other:Small molecule interactions:Global:Metabolism:Metabolism:Metabolism of Cofactors and Vitamins:Metabolism of Cofactors and Vitamins:Energy Metabolism:Energy Metabolism:Global:Metabolism:Carbohydrate Metabolism:Regulatory functions:Small molecule interactions:Signal transduction:Other:Information storage and processing:Cellular processes and signaling" 206 "3-dehydroquinate synthetase:Site-specific DNA methylase:Glycosyltransferase:5,10-methylenetetrahydrofolate reductase:Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA:Recombinational DNA repair ATPase (RecF pathway):Phosphate starvation-inducible protein PhoH, predicted ATPase:Cobyrinic acid a,c-diamide synthase:4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase:Cobalamin biosynthesis protein CbiG:Amino acid transport and metabolism:Amino acid transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Replication, recombination and repair:Replication, recombination and repair:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Photosynthesis:Phenylalanine tyrosine and tryptophan biosynthesis:Porphyrin and chlorophyll metabolism:Terpenoid backbone biosynthesis:Metabolic pathways:Biosynthesis of secondary metabolites:Mismatch repair:Homologous recombination:General function prediction only:General function prediction only:Signal transduction mechanisms:Signal transduction mechanisms:ispE:cinA_cterm:cobB:dam:recf:aroB:cobJ_cbiH:Metabolism of Terpenoids and Polyketides:Global:Metabolism:Metabolism of Cofactors and Vitamins:Amino Acid Metabolism:Energy Metabolism:Metabolism:Poorly characterized:Metabolism:Energy Metabolism:DNA metabolism:DNA replication, recombination, and repair:Amino acid biosynthesis:Aromatic amino acid family:Biosynthesis of cofactors, prosthetic groups, and carriers:Other:Heme, porphyrin, and cobalamin:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Cellular processes and signaling:Information storage and processing:Biosynthesis of cofactors, prosthetic groups, and carriers:Amino acid biosynthesis:DNA metabolism:Heme, porphyrin, and cobalamin:Other:Aromatic amino acid family:DNA replication, recombination, and repair:Global:Genetic Information Processing:Metabolism:Metabolism:Replication and Repair:Metabolism of Terpenoids and Polyketides:Metabolism of Cofactors and Vitamins:Replication and Repair:Amino Acid Metabolism:Genetic Information Processing" 207 "Energy production and conversion:Energy production and conversion:Fumarase:Guanylate kinase:Predicted unusual protein kinase:Formyltetrahydrofolate hydrolase:UDP-glucose 4-epimerase:DNA-binding protein, stimulates sugar fermentation:4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase:Mg/Co/Ni transporter MgtE (contains CBS domain):Predicted membrane protein:Nucleotide transport and metabolism:Nucleotide transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Citrate cycle (TCA cycle):Galactose metabolism:Purine metabolism:Amino sugar and nucleotide sugar metabolism:Glyoxylate and dicarboxylate metabolism:One carbon pool by folate:Carbon fixation pathways in prokaryotes:Terpenoid backbone biosynthesis:Aminoacyl-tRNA biosynthesis:Metabolic pathways:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:General function prediction only:General function prediction only:Function unknown:Function unknown:ispE:sfsA:mgtE:proS_fam_II:PurU:fumC_II:galE:guanyl_kin:TIGR03943:Metabolism of Cofactors and Vitamins:Metabolism:Metabolism of Terpenoids and Polyketides:Poorly characterized:Genetic Information Processing:Translation:Metabolism:Global:Metabolism:Cellular processes and signaling:Biosynthesis of cofactors, prosthetic groups, and carriers:Transport and binding proteins:Protein synthesis:Regulatory functions:Purines, pyrimidines, nucleosides, and nucleotides:Energy metabolism:Other:Carbohydrate Metabolism:Energy metabolism:TCA cycle:Sugars:Purines, pyrimidines, nucleosides, and nucleotides:Nucleotide and nucleoside interconversions:Purine ribonucleotide biosynthesis:Regulatory functions:Other:Protein synthesis:tRNA aminoacylation:Transport and binding proteins:Cations and iron carrying compounds:Biosynthesis of cofactors, prosthetic groups, and carriers:Other:Cellular processes and signaling:Metabolism:Poorly characterized:Cations and iron carrying compounds:tRNA aminoacylation:Other:Purine ribonucleotide biosynthesis:Nucleotide and nucleoside interconversions:Sugars:TCA cycle:Global:Genetic Information Processing:Metabolism:Metabolism:Translation:Metabolism of Terpenoids and Polyketides:Metabolism of Cofactors and Vitamins:Nucleotide Metabolism:Energy Metabolism:Energy Metabolism:Nucleotide Metabolism:Carbohydrate Metabolism" 208 "Ribosomal protein S5:Ribosomal protein S13:Ribosomal protein S11:Pseudouridylate synthase:Ribosomal protein L13:Ribosomal protein S9:DNA-directed RNA polymerase, alpha subunit/40 kD subunit:Ribosomal protein L17:Ribosomal protein L7/L12:Ribosomal protein S18:Ribosomal protein L10:Ribosomal protein L31:Ribosomal protein L33:Ribosomal protein L20:rRNA methylases:Uncharacterized protein conserved in bacteria:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Transcription:Transcription:Photosynthesis:Purine metabolism:Pyrimidine metabolism:Metabolic pathways:Ribosome:RNA polymerase:Function unknown:Function unknown:L17:hisT_truA:L31:S18:rRNA_methyl_3:L12:rpsE_bact:rpmG_bact:rplT_bact:rplM_bact:rpoA:PS_II_CP47:bact_S13:bact_S11:Metabolism:Global:Translation:Transcription:Genetic Information Processing:Energy Metabolism:Energy metabolism:Photosynthesis:Transcription:DNA-dependent RNA polymerase:Protein synthesis:Ribosomal proteins: synthesis and modification:tRNA and rRNA base modification:Information storage and processing:Poorly characterized:Nucleotide Metabolism:Energy Metabolism:Metabolism:Poorly characterized:Information storage and processing:Protein synthesis:Transcription:Energy metabolism:tRNA and rRNA base modification:Ribosomal proteins: synthesis and modification:DNA-dependent RNA polymerase:Photosynthesis:Global:Genetic Information Processing:Metabolism:Metabolism:Translation:Transcription:Nucleotide Metabolism" 209 "Predicted nucleic acid-binding protein, contains PIN domain:Predicted periplasmic or secreted lipoprotein:Antitoxin of toxin-antitoxin stability system:Anti-sigma regulatory factor (Ser/Thr protein kinase):Cell cycle control, cell division, chromosome partitioning:Cell cycle control, cell division, chromosome partitioning:Cell motility:Cell motility:General function prediction only:General function prediction only:Signal transduction mechanisms:Signal transduction mechanisms:phd_fam:Other:Mobile and extrachromosomal element functions:Cellular processes and signaling:Poorly characterized:Mobile and extrachromosomal element functions:Other:Cellular processes and signaling:Poorly characterized" 210 "Glucose-6-phosphate isomerase:Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain:Membrane proteins related to metalloendopeptidases:Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain:Long-chain acyl-CoA synthetases (AMP-forming):Uncharacterized protein conserved in bacteria:Tellurite resistance protein:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Transcription:Transcription:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Posttranslational modification, protein turnover, chaperones:Posttranslational modification, protein turnover, chaperones:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Glycolysis / Gluconeogenesis:Pentose phosphate pathway:Fatty acid metabolism:Starch and sucrose metabolism:Amino sugar and nucleotide sugar metabolism:Metabolic pathways:Biosynthesis of secondary metabolites:Microbial metabolism in diverse environments:Function unknown:Function unknown:Signal transduction mechanisms:Signal transduction mechanisms:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Lipid Metabolism:Global:Lipid Metabolism:Carbohydrate Metabolism:Metabolism:Poorly characterized:Metabolism:Cellular processes and signaling:Information storage and processing:Carbohydrate Metabolism:Global:Metabolism:Metabolism:Information storage and processing" 211 "NhaP-type Na+/H+ and K+/H+ antiporters:Predicted N6-adenine-specific DNA methylase:Phosphoribosylanthranilate isomerase:Dephospho-CoA kinase:Biotin-(acetyl-CoA carboxylase) ligase:Recombinational DNA repair protein (RecF pathway):Predicted aminomethyltransferase related to GcvT:ABC-type branched-chain amino acid transport systems, ATPase component:ABC-type branched-chain amino acid transport systems, ATPase component:Branched-chain amino acid ABC-type transport system, permease components:High-affinity Fe2+/Pb2+ permease:Uncharacterized protein conserved in bacteria:ABC-type sugar transport system, periplasmic component:Uncharacterized conserved protein:Predicted membrane protein:Precorrin-4 methylase:Predicted transcriptional regulator:Predicted membrane protein:ABC-type branched-chain amino acid transport system, permease component:Uncharacterized protein conserved in bacteria:Amino acid transport and metabolism:Amino acid transport and metabolism:Carbohydrate transport and metabolism:Carbohydrate transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Transcription:Transcription:Replication, recombination and repair:Replication, recombination and repair:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Phenylalanine tyrosine and tryptophan biosynthesis:Pantothenate and CoA biosynthesis:Biotin metabolism:Porphyrin and chlorophyll metabolism:Metabolic pathways:Biosynthesis of secondary metabolites:ABC transporters:Homologous recombination:General function prediction only:General function prediction only:Function unknown:Function unknown:birA_ligase:TIGR00152:recR:cobM_cbiF:ygfZ_signature:S_layer_CsaB:Protein synthesis:tRNA and rRNA base modification:Protein fate:Protein and peptide secretion and trafficking:Protein modification and repair:Biosynthesis of cofactors, prosthetic groups, and carriers:Heme, porphyrin, and cobalamin:Pantothenate and coenzyme A:Information storage and processing:Metabolism:Poorly characterized:Membrane Transport:Environmental Information Processing:Replication and Repair:Genetic Information Processing:Metabolism of Cofactors and Vitamins:Amino Acid Metabolism:Metabolism:Poorly characterized:Metabolism:Information storage and processing:Biosynthesis of cofactors, prosthetic groups, and carriers:Protein fate:Protein synthesis:DNA metabolism:Pantothenate and coenzyme A:Heme, porphyrin, and cobalamin:Protein modification and repair:Protein and peptide secretion and trafficking:tRNA and rRNA base modification:DNA replication, recombination, and repair:Global:Environmental Information Processing:Genetic Information Processing:Metabolism:Metabolism:Membrane Transport:Replication and Repair:Metabolism:Metabolism of Cofactors and Vitamins:Global:Amino Acid Metabolism:DNA metabolism:DNA replication, recombination, and repair" 212 "Energy production and conversion:Energy production and conversion:Predicted Na+-dependent transporter:Nucleotidyltransferase/DNA polymerase involved in DNA repair:Kef-type K+ transport systems, membrane components:5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases:NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit:Fe-S oxidoreductase:Glycosyltransferases, probably involved in cell wall biogenesis:Multidrug resistance efflux pump:Nucleotide transport and metabolism:Nucleotide transport and metabolism:Replication, recombination and repair:Replication, recombination and repair:Cell wall/membrane/envelope biogenesis:Cell wall/membrane/envelope biogenesis:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Oxidative phosphorylation:Starch and sucrose metabolism:Metabolic pathways:Two-component system:General function prediction only:General function prediction only:ndhF3_CO2:chpXY:Defense mechanisms:Defense mechanisms:Energy metabolism:Energy Metabolism:Signal Transduction:Metabolism:Metabolism:Environmental Information Processing:Global:Photosynthesis:Energy metabolism:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized:Metabolism:Carbohydrate Metabolism:Energy Metabolism:Environmental Information Processing:Signal Transduction:Global:Metabolism:Carbohydrate Metabolism:Photosynthesis:Information storage and processing:Cellular processes and signaling:Metabolism:Poorly characterized" 213 "Energy production and conversion:Energy production and conversion:Putative translation factor (SUA5):Riboflavin synthase beta-chain:Sec-independent protein secretion pathway components:Carbon dioxide concentrating mechanism/carboxysome shell protein:Ornithine/acetylornithine aminotransferase:Amino acid transport and metabolism:Amino acid transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Translation, ribosomal structure and biogenesis:Translation, ribosomal structure and biogenesis:Photosynthesis:Photosynthesis - antenna proteins:Arginine and proline metabolism:Riboflavin metabolism:Metabolic pathways:Biosynthesis of secondary metabolites:Protein export:Bacterial secretion system:Secondary metabolites biosynthesis, transport and catabolism:Secondary metabolites biosynthesis, transport and catabolism:lumazine-synth:argD:apcB:tatAE:PS_II_psbZ:PS_II_C550:Intracellular trafficking, secretion, and vesicular transport:Intracellular trafficking, secretion, and vesicular transport:Protein fate:Protein and peptide secretion and trafficking:Biosynthesis of cofactors, prosthetic groups, and carriers:Riboflavin, FMN, and FAD:Information storage and processing:Cellular processes and signaling:Metabolism:Folding Sorting and Degradation:Amino Acid Metabolism:Metabolism of Cofactors and Vitamins:Folding Sorting and Degradation:Membrane Transport:Metabolism:Metabolism:Genetic Information Processing:Environmental Information Processing:Global:Photosynthesis:Protein and peptide secretion and trafficking:Riboflavin, FMN, and FAD:Energy metabolism:Protein fate:Biosynthesis of cofactors, prosthetic groups, and carriers:Information storage and processing:Cellular processes and signaling:Metabolism:Metabolism:Energy Metabolism:Amino Acid Metabolism:Metabolism of Cofactors and Vitamins:Genetic Information Processing:Energy Metabolism:Environmental Information Processing:Membrane Transport:Global:Metabolism:Energy metabolism:Photosynthesis" 214 "Thymidylate kinase:N-methylhydantoinase A/acetone carboxylase, beta subunit:Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II:Cobalamin-5-phosphate synthase:Arsenite efflux pump ACR3 and related permeases:GTPase SAR1 and related small G proteins:Putative transcriptional regulator, homolog of Bvg accessory factor:Predicted DNA-binding protein with PD1-like DNA-binding motif:Uncharacterized membrane protein, possible Na+ channel or pump:Selenophosphate synthetase-related proteins:ABC-type molybdate transport system, permease component:ABC-type sulfate transport system, permease component:Amino acid transport and metabolism:Amino acid transport and metabolism:Nucleotide transport and metabolism:Nucleotide transport and metabolism:Coenzyme transport and metabolism:Coenzyme transport and metabolism:Lipid transport and metabolism:Lipid transport and metabolism:Transcription:Transcription:Inorganic ion transport and metabolism:Inorganic ion transport and metabolism:Ubiquinone and other terpenoid-quinone biosynthesis:Pyrimidine metabolism:Glutathione metabolism:Pantothenate and CoA biosynthesis:Porphyrin and chlorophyll metabolism:Metabolic pathways:Biosynthesis of secondary metabolites:ABC transporters:Secondary metabolites biosynthesis, transport and catabolism:Secondary metabolites biosynthesis, transport and catabolism:General function prediction only:General function prediction only:DTMP_kinase:cobS:baf:acr3:3a0106s02:modB_ABC:AIR_rel_sll0787:Purines, pyrimidines, nucleosides, and nucleotides:Metabolism of Other Amino Acids:Metabolism of Cofactors and Vitamins:Membrane Transport:Metabolism:Metabolism:Environmental Information Processing:Global:Nucleotide and nucleoside interconversions:Anions:Enzymes of unknown specificity:Heme, porphyrin, and cobalamin:Pantothenate and coenzyme A:Purines, pyrimidines, nucleosides, and nucleotides:Transport and binding proteins:Unknown function:Biosynthesis of cofactors, prosthetic groups, and carriers:Information storage and processing:Metabolism:Poorly characterized:Metabolism:Nucleotide Metabolism:Metabolism of Other Amino Acids:Metabolism of Cofactors and Vitamins:Environmental Information Processing:Membrane Transport:Global:Metabolism:Nucleotide Metabolism:Nucleotide and nucleoside interconversions:Transport and binding proteins:Anions:Unknown function:Enzymes of unknown specificity:Biosynthesis of cofactors, prosthetic groups, and carriers:Heme, porphyrin, and cobalamin:Pantothenate and coenzyme A:Information storage and processing:Metabolism:Poorly characterized"