Desulfovibrio vulgaris Hildenborough Module 1 Residual: 0.41 | Syntrophy Portal

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Summary

Residual: 0.41 Score: -53.8298 version: dvh_cmonkey_11_Mar_02

Members

DVU0383 Uncharacterized protein Details for DVU0383 - Uncharacterized protein GO Terms: GO:0009055, GO:0020037 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0383 Tuberculist Genomic Region	DVU2139 Histone deacetylase family protein Details for DVU2139 - Histone deacetylase family protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2139 Tuberculist Genomic Region
DVU0824 Uncharacterized protein Details for DVU0824 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0824 Tuberculist Genomic Region	DVU2169 Uncharacterized protein Details for DVU2169 - Uncharacterized protein GO Terms: GO:0019028 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2169 Tuberculist Genomic Region
DVU0964 Glu/Leu/Phe/Val dehydrogenase family protein Details for DVU0964 - Glu/Leu/Phe/Val dehydrogenase family protein GO Terms: GO:0019551, GO:0004352 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0964 Tuberculist Genomic Region	DVU2326 Conserved domain protein Details for DVU2326 - Conserved domain protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2326 Tuberculist Genomic Region
DVU1243 Uncharacterized protein Details for DVU1243 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1243 Tuberculist Genomic Region	DVU2602 Conserved domain protein Details for DVU2602 - Conserved domain protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2602 Tuberculist Genomic Region
DVU1790 Endonuclease MutS2 Details for DVU1790 - Endonuclease MutS2 GO Terms: GO:0005524, GO:0016887, GO:0004519, GO:0006298, GO:0030983, GO:0045910 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1790 Tuberculist Genomic Region	DVU2622 Uncharacterized protein Details for DVU2622 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2622 Tuberculist Genomic Region
DVU1962 Methyl-accepting chemotaxis protein Details for DVU1962 - Methyl-accepting chemotaxis protein GO Terms: GO:0016021, GO:0004871 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1962 Tuberculist Genomic Region	DVU2915 Uncharacterized protein Details for DVU2915 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2915 Tuberculist Genomic Region
DVU2120 Uncharacterized protein Details for DVU2120 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2120 Tuberculist Genomic Region

Motifs

Motif 1:

e-value: 3100 Motif 2:

e-value: 11000

Module Median Expression Profiles

Module Plots

Regulation

Regulator	Interaction	Influence Weight	Other Influences
[field_regulator_taxonomy_regulat_1]	down-regulates	-0.22	cooA knockout
DVU0110 Sigma-54 dependent transcriptional regulator/response regulator	down-regulates	-0.11	DVU0110
DVU0269 Transcriptional regulator, rrf2 protein, putative	up-regulates	0.12	DVU0269
DVU0569 Sigma-54 dependent transcriptional regulator	down-regulates	-0.11	DVU0569
[field_regulator_taxonomy_regulat_1]	up-regulates	0.12	DVU0597 knockout
DVU1063 Transcriptional regulatory protein	up-regulates	0.13	DVU1063
DVU1142 Transcriptional regulator, putative	down-regulates	-0.13	DVU1142
DVU2114 Sigma-54 dependent transcriptional regulator/response regulator	down-regulates	-0.16	DVU2114
DVU2588 DNA-binding response regulator	up-regulates	0.10	DVU2588
DVU2886 Transcriptional regulator, AraC family	down-regulates	-0.20	DVU2886

GO Enrichment

Category: BP
Category	GO ID	GO Term	Annotated	Expected	Significant	p-value
BP	GO:0006536	glutamate metabolic process	4	0.01	1	0.0108
BP	GO:0043648	dicarboxylic acid metabolic process	4	0.01	1	0.0108
BP	GO:0009063	cellular amino acid catabolic process	6	0.02	1	0.0163
BP	GO:0016054	organic acid catabolic process	6	0.02	1	0.0163
BP	GO:0044282	small molecule catabolic process	6	0.02	1	0.0163
BP	GO:0046395	carboxylic acid catabolic process	6	0.02	1	0.0163
BP	GO:1901606	alpha-amino acid catabolic process	6	0.02	1	0.0163
BP	GO:1901565	organonitrogen compound catabolic proces...	7	0.02	1	0.0190
BP	GO:0044712	single-organism catabolic process	8	0.02	1	0.0217
BP	GO:0009064	glutamine family amino acid metabolic pr...	9	0.02	1	0.0244
BP	GO:0044248	cellular catabolic process	10	0.03	1	0.0271
BP	GO:0009056	catabolic process	12	0.03	1	0.0325
BP	GO:1901575	organic substance catabolic process	12	0.03	1	0.0325

Category: CC
Category	GO ID	GO Term	Annotated	Expected	Significant	p-value
CC	GO:0019012	virion	3	0.02	1	0.0150
CC	GO:0019028	viral capsid	3	0.02	1	0.0150
CC	GO:0044423	virion part	3	0.02	1	0.0150

Category: MF
Category	GO ID	GO Term	Annotated	Expected	Significant	p-value
MF	GO:0009055	electron carrier activity	16	0.02	1	0.0250

Essentiality

Comments

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