Desulfovibrio vulgaris Hildenborough Module 24 Residual: 0.38 | Syntrophy Portal

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Summary

Residual: 0.38 Score: -70.0464 version: dvh_cmonkey_11_Mar_02

Members

DVU1106 Uncharacterized protein Details for DVU1106 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1106 Tuberculist Genomic Region	DVU1132 Uncharacterized protein Details for DVU1132 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1132 Tuberculist Genomic Region
DVU1114 Virion morphogenesis protein Details for DVU1114 - Virion morphogenesis protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1114 Tuberculist Genomic Region	DVU1133 Uncharacterized protein Details for DVU1133 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1133 Tuberculist Genomic Region
DVU1116 Uncharacterized protein Details for DVU1116 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1116 Tuberculist Genomic Region	DVU1135 Conserved domain protein Details for DVU1135 - Conserved domain protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1135 Tuberculist Genomic Region
DVU1118 Uncharacterized protein Details for DVU1118 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1118 Tuberculist Genomic Region	DVU1137 Uncharacterized protein Details for DVU1137 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1137 Tuberculist Genomic Region
DVU1120 Uncharacterized protein Details for DVU1120 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1120 Tuberculist Genomic Region	DVU1138 Uncharacterized protein Details for DVU1138 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1138 Tuberculist Genomic Region
DVU1125 Conserved domain protein Details for DVU1125 - Conserved domain protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1125 Tuberculist Genomic Region	DVU1140 Bacteriophage transposase A protein, putative Details for DVU1140 - Bacteriophage transposase A protein, putative GO Terms: GO:0003677, GO:0015074 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1140 Tuberculist Genomic Region
DVU1130 DNA-binding protein Details for DVU1130 - DNA-binding protein GO Terms: GO:0003677 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1130 Tuberculist Genomic Region	DVU1143 Uncharacterized protein Details for DVU1143 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1143 Tuberculist Genomic Region

Motifs

Motif 1:

e-value: 1700 Motif 2:

e-value: 11000

Module Median Expression Profiles

Module Plots

Regulation

Regulator	Interaction	Influence Weight	Other Influences
[field_regulator_taxonomy_regulat_1]	up-regulates	0.14	Co-culture Ancestor
DVU0525 Transcriptional regulator, MarR family	up-regulates	0.21	DVU0525
[field_regulator_taxonomy_regulat_1]	up-regulates	0.29	DVU0597 knockout
DVU0679 Sigma-54 dependent transcriptional regulator/response regulator	up-regulates	0.13	DVU0679
DVU1083 Phosphate regulon transcriptional regulator PhoB	up-regulates	0.18	DVU1083
DVU1547 Sensory box protein	up-regulates	0.10	DVU1547
DVU1964 Transcriptional regulator, rrf2 protein, putative	down-regulates	-0.11	DVU1964
DVU2114 Sigma-54 dependent transcriptional regulator/response regulator	down-regulates	-0.19	DVU2114
DVU2359 Sigma-54 dependent transcriptional regulator	down-regulates	-0.13	DVU2359
DVU2588 DNA-binding response regulator	up-regulates	0.11	DVU2588

GO Enrichment

Category: MF
Category	GO ID	GO Term	Annotated	Expected	Significant	p-value
MF	GO:0003677	DNA binding	159	0.25	2	0.0150
MF	GO:0003676	nucleic acid binding	222	0.35	2	0.0300

Essentiality

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