Desulfovibrio vulgaris Hildenborough Module 74 Residual: 0.41

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Summary

Residual: 0.41 Score: -66.2453 version: dvh_cmonkey_11_Mar_02

Members

DVU0692 Molybdopterin oxidoreductase, transmembrane subunit, putative

Details for DVU0692 - Molybdopterin oxidoreductase, transmembrane subunit, putative

GO Terms: GO:0016021

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0692

Tuberculist Genomic Region

DVU0849 Heterodisulfide reductase, iron-sulfur-binding subunit, putative

Details for DVU0849 - Heterodisulfide reductase, iron-sulfur-binding subunit, putative

GO Terms: GO:0051536, GO:0015948, GO:0016491

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0849

Tuberculist Genomic Region

DVU0693 Molybdopterin oxidoreductase, iron-sulfur cluster-binding subunit, putative

Details for DVU0693 - Molybdopterin oxidoreductase, iron-sulfur cluster-binding subunit, putative

GO Terms: GO:0051536

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0693

Tuberculist Genomic Region

DVU0850 Heterodisulfide reductase, transmembrane subunit, putative

Details for DVU0850 - Heterodisulfide reductase, transmembrane subunit, putative

GO Terms: GO:0016021, GO:0051536

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0850

Tuberculist Genomic Region

DVU0694 Molybdopterin oxidoreductase, molybdopterin-binding subunit, putative

Details for DVU0694 - Molybdopterin oxidoreductase, molybdopterin-binding subunit, putative

GO Terms: GO:0051539, GO:0030151, GO:0016491

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0694

Tuberculist Genomic Region

DVU0851 Uncharacterized protein

Details for DVU0851 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0851

Tuberculist Genomic Region

DVU0774 ATP synthase epsilon chain

Details for DVU0774 - ATP synthase epsilon chain

GO Terms: GO:0005524, GO:0005886, GO:0042777, GO:0046933, GO:0045261, GO:0046961

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0774

Tuberculist Genomic Region

DVU0917 ATP synthase subunit c

Details for DVU0917 - ATP synthase subunit c

GO Terms: GO:0015991, GO:0015986, GO:0015078, GO:0016021, GO:0008289, GO:0005886, GO:0045263

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0917

Tuberculist Genomic Region

DVU0775 ATP synthase subunit beta

Details for DVU0775 - ATP synthase subunit beta

GO Terms: GO:0005524, GO:0015991, GO:0005886, GO:0042777, GO:0046933, GO:0045261

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0775

Tuberculist Genomic Region

DVU0918 ATP synthase subunit a

Details for DVU0918 - ATP synthase subunit a

GO Terms: GO:0016021, GO:0005886, GO:0042777, GO:0046933, GO:0045263

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0918

Tuberculist Genomic Region

DVU0776 ATP synthase gamma chain

Details for DVU0776 - ATP synthase gamma chain

GO Terms: GO:0005524, GO:0005886, GO:0042777, GO:0046933, GO:0045261, GO:0046961

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0776

Tuberculist Genomic Region

DVU0919 Uncharacterized protein

Details for DVU0919 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0919

Tuberculist Genomic Region

DVU0777 ATP synthase subunit alpha

Details for DVU0777 - ATP synthase subunit alpha

GO Terms: GO:0005524, GO:0015991, GO:0005886, GO:0042777, GO:0046933, GO:0045261, GO:0046961

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0777

Tuberculist Genomic Region

DVU1264 Transglycosylase SLT domain protein

Details for DVU1264 - Transglycosylase SLT domain protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1264

Tuberculist Genomic Region

DVU0779 ATP synthase subunit b

Details for DVU0779 - ATP synthase subunit b

GO Terms: GO:0016021, GO:0005886, GO:0042777, GO:0046933, GO:0045263

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0779

Tuberculist Genomic Region

DVU1294 Uncharacterized protein

Details for DVU1294 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1294

Tuberculist Genomic Region

DVU0780 ATP synthase F0, B' subunit, putative

Details for DVU0780 - ATP synthase F0, B' subunit, putative

GO Terms: GO:0015986, GO:0015078, GO:0016021, GO:0045263

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0780

Tuberculist Genomic Region

DVU1296 Uncharacterized protein

Details for DVU1296 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1296

Tuberculist Genomic Region

DVU0845 Uncharacterized protein

Details for DVU0845 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0845

Tuberculist Genomic Region

DVU1932 Adenylate kinase

Details for DVU1932 - Adenylate kinase

GO Terms: GO:0044209, GO:0005524, GO:0004017, GO:0005737

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1932

Tuberculist Genomic Region

DVU0846 Adenylylsulphate reductase, beta subunit

Details for DVU0846 - Adenylylsulphate reductase, beta subunit

GO Terms: GO:0051539, GO:0009973, GO:0046872

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0846

Tuberculist Genomic Region

DVU1295 Sulfate adenylyltransferase

Details for DVU1295 - Sulfate adenylyltransferase

GO Terms: GO:0004781, GO:0000103

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1295

Tuberculist Genomic Region

DVU0847 Adenylyl-sulphate reductase, alpha subunit

Details for DVU0847 - Adenylyl-sulphate reductase, alpha subunit

GO Terms: GO:0009973

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0847

Tuberculist Genomic Region

DVU1636 Inorganic pyrophosphatase, manganese-dependent

Details for DVU1636 - Inorganic pyrophosphatase, manganese-dependent

GO Terms: GO:0005737, GO:0004427, GO:0046872

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1636

Tuberculist Genomic Region

DVU0848 Heterodisulfide reductase, putative

Details for DVU0848 - Heterodisulfide reductase, putative

GO Terms: GO:0055114

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0848

Tuberculist Genomic Region

Displaying 1 - 25 of 25

Motifs

Motif 1: e-value: 0.016 e-value: 150

Module Plots

Regulation

Regulator Interaction Influence Weight Other Influences

DVU0744

Sigma-54 dependent transcriptional regulator/response regulator
 down-regulates -0.14

DVU0744

DVU0749

DNA-binding response regulator
 up-regulates 0.11

DVU0749

DVU1760

Transcriptional regulator, TetR family
 up-regulates 0.16

DVU1760

DVU2275

Sigma-54 dependent transcriptional regulator
 up-regulates 0.14

DVU2275

DVU2577

DNA-binding response regulator, LuxR family
 down-regulates -0.15

DVU2577

DVU2802

Transcriptional regulator, GntR family
 down-regulates -0.20

DVU2802
[field_regulator_taxonomy_regulat_1] down-regulates -0.22

Formate

GO Enrichment

Category: BP
Category GO ID GO Term Annotated Expected Significant p-value
BP GO:0055085 transmembrane transport 4 0.04 2 0.0005
BP GO:0042451 purine nucleoside biosynthetic process 5 0.05 2 0.0009
BP GO:0046129 purine ribonucleoside biosynthetic proce... 5 0.05 2 0.0009
BP GO:0042278 purine nucleoside metabolic process 8 0.09 2 0.0024
BP GO:0046128 purine ribonucleoside metabolic process 8 0.09 2 0.0024
BP GO:0006811 ion transport 10 0.11 2 0.0039
BP GO:0009163 nucleoside biosynthetic process 13 0.14 2 0.0066
BP GO:0042455 ribonucleoside biosynthetic process 13 0.14 2 0.0066
BP GO:1901659 glycosyl compound biosynthetic process 13 0.14 2 0.0066
BP GO:0044765 single-organism transport 15 0.16 2 0.0089
BP GO:0009119 ribonucleoside metabolic process 16 0.17 2 0.0101
BP GO:0006164 purine nucleotide biosynthetic process 17 0.18 2 0.0114
BP GO:0009127 purine nucleoside monophosphate biosynth... 17 0.18 2 0.0114
BP GO:0009152 purine ribonucleotide biosynthetic proce... 17 0.18 2 0.0114
BP GO:0009168 purine ribonucleoside monophosphate bios... 17 0.18 2 0.0114
BP GO:0072522 purine-containing compound biosynthetic ... 17 0.18 2 0.0114
BP GO:0006163 purine nucleotide metabolic process 18 0.20 2 0.0128
BP GO:0009126 purine nucleoside monophosphate metaboli... 18 0.20 2 0.0128
BP GO:0009150 purine ribonucleotide metabolic process 18 0.20 2 0.0128
BP GO:0009167 purine ribonucleoside monophosphate meta... 18 0.20 2 0.0128
BP GO:0009116 nucleoside metabolic process 19 0.21 2 0.0142
BP GO:1901657 glycosyl compound metabolic process 19 0.21 2 0.0142
BP GO:0006810 transport 20 0.22 2 0.0157
BP GO:0051234 establishment of localization 20 0.22 2 0.0157
BP GO:0051179 localization 21 0.23 2 0.0173
BP GO:0072521 purine-containing compound metabolic pro... 21 0.23 2 0.0173
BP GO:0009156 ribonucleoside monophosphate biosyntheti... 23 0.25 2 0.0207
BP GO:0009124 nucleoside monophosphate biosynthetic pr... 24 0.26 2 0.0225
BP GO:0009161 ribonucleoside monophosphate metabolic p... 24 0.26 2 0.0225
BP GO:0009123 nucleoside monophosphate metabolic proce... 25 0.27 2 0.0244
BP GO:0009260 ribonucleotide biosynthetic process 25 0.27 2 0.0244
BP GO:0046390 ribose phosphate biosynthetic process 25 0.27 2 0.0244
BP GO:0009259 ribonucleotide metabolic process 26 0.28 2 0.0263
BP GO:0019693 ribose phosphate metabolic process 26 0.28 2 0.0263
BP GO:0006167 AMP biosynthetic process 3 0.03 1 0.0323
BP GO:0009142 nucleoside triphosphate biosynthetic pro... 3 0.03 1 0.0323
BP GO:0009201 ribonucleoside triphosphate biosynthetic... 3 0.03 1 0.0323
BP GO:0043094 cellular metabolic compound salvage 3 0.03 1 0.0323
BP GO:0046033 AMP metabolic process 3 0.03 1 0.0323
BP GO:0009165 nucleotide biosynthetic process 32 0.35 2 0.0392
BP GO:1901293 nucleoside phosphate biosynthetic proces... 32 0.35 2 0.0392
BP GO:0009141 nucleoside triphosphate metabolic proces... 4 0.04 1 0.0428
BP GO:0009199 ribonucleoside triphosphate metabolic pr... 4 0.04 1 0.0428
BP GO:0006753 nucleoside phosphate metabolic process 35 0.38 2 0.0465
BP GO:0009117 nucleotide metabolic process 35 0.38 2 0.0465
Category: MF
Category GO ID GO Term Annotated Expected Significant p-value
MF GO:0051536 iron-sulfur cluster binding 110 0.86 4 0.0072
MF GO:0051540 metal cluster binding 110 0.86 4 0.0072
MF GO:0016779 nucleotidyltransferase activity 6 0.05 1 0.0460

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