Desulfovibrio vulgaris Hildenborough Module 100 Residual: 0.43 | Syntrophy Portal

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Summary

Residual: 0.43 Score: -46.3916 version: dvh_cmonkey_11_Mar_02

Members

DVU1476 Uncharacterized protein Details for DVU1476 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1476 Tuberculist Genomic Region	DVU2632 Uncharacterized protein Details for DVU2632 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2632 Tuberculist Genomic Region
DVU1517 Transcriptional regulator cII, putative Details for DVU1517 - Transcriptional regulator cII, putative GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1517 Tuberculist Genomic Region	DVU2685 Uncharacterized protein Details for DVU2685 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2685 Tuberculist Genomic Region
DVU1518 Transcriptional regulator cI, truncation Details for DVU1518 - Transcriptional regulator cI, truncation GO Terms: GO:0043565 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1518 Tuberculist Genomic Region	DVU0543 UPF0324 membrane protein DVU_0543 Details for DVU0543 - UPF0324 membrane protein DVU_0543 GO Terms: GO:0016021, GO:0005886 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0543 Tuberculist Genomic Region
DVU1738 Site-specific recombinase, phage integrase family Details for DVU1738 - Site-specific recombinase, phage integrase family GO Terms: GO:0003677, GO:0015074, GO:0006310 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1738 Tuberculist Genomic Region	DVU1161 Uncharacterized protein Details for DVU1161 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1161 Tuberculist Genomic Region
DVU1972 Uncharacterized protein Details for DVU1972 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1972 Tuberculist Genomic Region	DVU1482 Uncharacterized protein Details for DVU1482 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1482 Tuberculist Genomic Region
DVU2008 Uncharacterized protein Details for DVU2008 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2008 Tuberculist Genomic Region	DVU1779 Uncharacterized protein Details for DVU1779 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1779 Tuberculist Genomic Region
DVU2074 Chemotaxis protein CheW Details for DVU2074 - Chemotaxis protein CheW GO Terms: GO:0006935, GO:0005622, GO:0004871 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2074 Tuberculist Genomic Region	DVU1872 Uncharacterized protein Details for DVU1872 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1872 Tuberculist Genomic Region
DVU2134 Uncharacterized protein Details for DVU2134 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2134 Tuberculist Genomic Region	DVU1998 Uncharacterized protein Details for DVU1998 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1998 Tuberculist Genomic Region
DVU2189 Transcriptional regulator cII, putative Details for DVU2189 - Transcriptional regulator cII, putative GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2189 Tuberculist Genomic Region	DVU2213 Nuclease domain protein Details for DVU2213 - Nuclease domain protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2213 Tuberculist Genomic Region
DVU2190 Transcriptional regulator, putative Details for DVU2190 - Transcriptional regulator, putative GO Terms: GO:0043565 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2190 Tuberculist Genomic Region	DVU3314 Peptidase, U32 family Details for DVU3314 - Peptidase, U32 family GO Terms: GO:0008233 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU3314 Tuberculist Genomic Region

Motifs

Motif 1:

e-value: 3 Motif 2:

e-value: 530

Module Median Expression Profiles

Module Plots

Regulation

Regulator	Interaction	Influence Weight	Other Influences
DVU0813 Heat-inducible transcription repressor HrcA	up-regulates	0.24	DVU0813
DVU1402 Transcriptional regulator, LysR family	up-regulates	0.14	DVU1402
DVU2086 Transcriptional regulator, GntR family	up-regulates	0.15	DVU2086
DVU2832 Transcriptional regulator cII, putative	up-regulates	0.33	DVU2832
DVU3381 Transcriptional regulatory protein zraR	up-regulates	0.21	DVU3381

GO Enrichment

Category: BP
Category	GO ID	GO Term	Annotated	Expected	Significant	p-value
BP	GO:0006935	chemotaxis	18	0.05	1	0.0490
BP	GO:0042330	taxis	18	0.05	1	0.0490

Category: MF
Category	GO ID	GO Term	Annotated	Expected	Significant	p-value
MF	GO:0043565	sequence-specific DNA binding	15	0.05	2	0.0008
MF	GO:0003677	DNA binding	159	0.50	3	0.0068
MF	GO:0003676	nucleic acid binding	222	0.69	3	0.0179

Essentiality

Comments

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