Desulfovibrio vulgaris Hildenborough Module 124 Residual: 0.41 | Syntrophy Portal

×

Error message

Unable to create CTools CSS cache directory. Check the permissions on your files directory.
Unable to create CTools CSS cache directory. Check the permissions on your files directory.

Summary

Residual: 0.41 Score: -59.8675 version: dvh_cmonkey_11_Mar_02

Members

DVU0658 Heat shock protein, Hsp20 family Details for DVU0658 - Heat shock protein, Hsp20 family GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0658 Tuberculist Genomic Region	DVU0894 Chorismate synthase Details for DVU0894 - Chorismate synthase GO Terms: GO:0009073, GO:0009423, GO:0004107 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0894 Tuberculist Genomic Region
DVU1766 Aspartate ammonia-lyase, putative Details for DVU1766 - Aspartate ammonia-lyase, putative GO Terms: GO:0016829, GO:0006099 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1766 Tuberculist Genomic Region	DVU1052 CBS domain protein Details for DVU1052 - CBS domain protein GO Terms: GO:0003824 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1052 Tuberculist Genomic Region
DVU2601 Uncharacterized protein Details for DVU2601 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2601 Tuberculist Genomic Region	DVU1208 Phosphate acyltransferase Details for DVU1208 - Phosphate acyltransferase GO Terms: GO:0005737, GO:0006633, GO:0016616, GO:0008654, GO:0016747 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1208 Tuberculist Genomic Region
DVU2758 Chorismate dehydratase Details for DVU2758 - Chorismate dehydratase GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2758 Tuberculist Genomic Region	DVU2139 Histone deacetylase family protein Details for DVU2139 - Histone deacetylase family protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2139 Tuberculist Genomic Region
DVU2777 Uncharacterized protein Details for DVU2777 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2777 Tuberculist Genomic Region	DVU2640 Uncharacterized protein Details for DVU2640 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2640 Tuberculist Genomic Region
DVU3257 DNA internalization-related competence protein ComEC/Rec2 Details for DVU3257 - DNA internalization-related competence protein ComEC/Rec2 GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU3257 Tuberculist Genomic Region	DVU3169 Cobalamin biosynthesis protein CbiG Details for DVU3169 - Cobalamin biosynthesis protein CbiG GO Terms: GO:0009236 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU3169 Tuberculist Genomic Region
DVU0430 Ech hydrogenase, subunit EchE, putative Details for DVU0430 - Ech hydrogenase, subunit EchE, putative GO Terms: GO:0051287, GO:0008901, GO:0016151, GO:0016651, GO:0048038 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0430 Tuberculist Genomic Region	DVUA0148 Major facilitator superfamily protein Details for DVUA0148 - Major facilitator superfamily protein GO Terms: GO:0016021, GO:0055085 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVUA0148 Tuberculist Genomic Region

Motifs

Motif 1:

e-value: 10 Motif 2:

e-value: 6200

Module Median Expression Profiles

Module Plots

Regulation

Regulator	Interaction	Influence Weight	Other Influences
DVU0619 Sigma-54 dependent transcriptional regulator	down-regulates	-0.15	DVU0619
DVU1063 Transcriptional regulatory protein	up-regulates	0.20	DVU1063
DVU1628 RNA polymerase sigma-54 factor	down-regulates	-0.11	DVU1628
DVU2114 Sigma-54 dependent transcriptional regulator/response regulator	down-regulates	-0.20	DVU2114
DVU2588 DNA-binding response regulator	up-regulates	0.13	DVU2588
[field_regulator_taxonomy_regulat_1]	up-regulates	10.81	Oxygen

GO Enrichment

Category: BP
Category	GO ID	GO Term	Annotated	Expected	Significant	p-value
BP	GO:0044283	small molecule biosynthetic process	31	0.17	2	0.0068
BP	GO:0009072	aromatic amino acid family metabolic pro...	3	0.02	1	0.0162
BP	GO:0009073	aromatic amino acid family biosynthetic ...	3	0.02	1	0.0162
BP	GO:0019438	aromatic compound biosynthetic process	61	0.33	2	0.0270
BP	GO:1901566	organonitrogen compound biosynthetic pro...	68	0.37	2	0.0336
BP	GO:1901362	organic cyclic compound biosynthetic pro...	70	0.38	2	0.0356
BP	GO:0044711	single-organism biosynthetic process	82	0.44	2	0.0489

Category: MF
Category	GO ID	GO Term	Annotated	Expected	Significant	p-value
MF	GO:0051287	NAD binding	12	0.03	1	0.0280

Essentiality

Comments

Log in to post comments