Desulfovibrio vulgaris Hildenborough Module 159 Residual: 0.34 | Syntrophy Portal

×

Error message

Unable to create CTools CSS cache directory. Check the permissions on your files directory.
Unable to create CTools CSS cache directory. Check the permissions on your files directory.

Summary

Residual: 0.34 Score: -87.865 version: dvh_cmonkey_11_Mar_02

Members

DVU1510 Uncharacterized protein Details for DVU1510 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1510 Tuberculist Genomic Region	DVU2836 Uncharacterized protein Details for DVU2836 - Uncharacterized protein GO Terms: GO:0043565 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2836 Tuberculist Genomic Region
DVU1692 Uncharacterized protein Details for DVU1692 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1692 Tuberculist Genomic Region	DVU2839 Uncharacterized protein Details for DVU2839 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2839 Tuberculist Genomic Region
DVU2179 ISDvu2, transposase OrfA Details for DVU2179 - ISDvu2, transposase OrfA GO Terms: GO:0043565, GO:0004803, GO:0006313 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2179 Tuberculist Genomic Region	DVUA0017 Uncharacterized protein Details for DVUA0017 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVUA0017 Tuberculist Genomic Region
DVU2220 Uncharacterized protein Details for DVU2220 - Uncharacterized protein GO Terms: GO:0003677 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2220 Tuberculist Genomic Region	DVU1509 Uncharacterized protein Details for DVU1509 - Uncharacterized protein GO Terms: GO:0003677 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1509 Tuberculist Genomic Region
DVU2686 Peptidase, S24 family Details for DVU2686 - Peptidase, S24 family GO Terms: GO:0003677, GO:0045892 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2686 Tuberculist Genomic Region	DVU1519 Transcriptional regulator, putative Details for DVU1519 - Transcriptional regulator, putative GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1519 Tuberculist Genomic Region

Motifs

Motif 1:

e-value: 70 Motif 2:

e-value: 44

Module Median Expression Profiles

Module Plots

Regulation

Regulator	Interaction	Influence Weight	Other Influences
DVU0916 Redox-sensing transcriptional repressor Rex	up-regulates	0.18	DVU0916
DVU0942 Transcriptional regulator, Fur family	up-regulates	0.11	DVU0942
DVU1144 Transcriptional regulator, Cro/CI family	up-regulates	0.13	DVU1144
DVU2036 Helix-turn-helix protein, CopG family	up-regulates	0.17	DVU2036
DVU2106 Sigma-54 dependent transcriptional regulator	up-regulates	0.11	DVU2106
DVU2114 Sigma-54 dependent transcriptional regulator/response regulator	up-regulates	0.23	DVU2114
DVU2527 Transcriptional regulator, putative	up-regulates	0.18	DVU2527
DVU2799 Transcriptional regulator, MarR family	up-regulates	0.15	DVU2799
DVU3084 Transcriptional regulator, putative	up-regulates	0.10	DVU3084

GO Enrichment

Category: MF
Category	GO ID	GO Term	Annotated	Expected	Significant	p-value
MF	GO:0003677	DNA binding	159	0.50	4	0.0002
MF	GO:0003676	nucleic acid binding	222	0.69	4	0.0009
MF	GO:0043565	sequence-specific DNA binding	15	0.05	1	0.0461

Essentiality

Comments

Log in to post comments