Desulfovibrio vulgaris Hildenborough Module 164 Residual: 0.38 | Syntrophy Portal

×

Error message

Unable to create CTools CSS cache directory. Check the permissions on your files directory.
Unable to create CTools CSS cache directory. Check the permissions on your files directory.

Summary

Residual: 0.38 Score: -67.082 version: dvh_cmonkey_11_Mar_02

Members

DVU0074 Polysaccharide biosynthesis domain protein Details for DVU0074 - Polysaccharide biosynthesis domain protein GO Terms: GO:0008830, GO:0009103 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0074 Tuberculist Genomic Region	DVU0321 Type III pantothenate kinase Details for DVU0321 - Type III pantothenate kinase GO Terms: GO:0005524, GO:0015937, GO:0005737, GO:0046872, GO:0004594 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0321 Tuberculist Genomic Region
DVU0657 Heat shock protein, Hsp20 family Details for DVU0657 - Heat shock protein, Hsp20 family GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0657 Tuberculist Genomic Region	DVU0792 Conserved domain protein Details for DVU0792 - Conserved domain protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0792 Tuberculist Genomic Region
DVU2227 Uncharacterized protein Details for DVU2227 - Uncharacterized protein GO Terms: GO:0035438 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2227 Tuberculist Genomic Region	DVU0793 Uncharacterized protein Details for DVU0793 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0793 Tuberculist Genomic Region
DVU2323 Uncharacterized protein Details for DVU2323 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2323 Tuberculist Genomic Region	DVU1041 Sec-independent protein translocase protein TatC Details for DVU1041 - Sec-independent protein translocase protein TatC GO Terms: GO:0033281, GO:0005887, GO:0008320, GO:0043953 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1041 Tuberculist Genomic Region
DVU3174 Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE Details for DVU3174 - Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE GO Terms: GO:0008425, GO:0009060, GO:0009234, GO:0006744 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU3174 Tuberculist Genomic Region	DVU1242 VacJ lipoprotein, putative Details for DVU1242 - VacJ lipoprotein, putative GO Terms: GO:0016020 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1242 Tuberculist Genomic Region
DVU0153 Uncharacterized protein Details for DVU0153 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0153 Tuberculist Genomic Region	DVU1407 Radical SAM domain protein Details for DVU1407 - Radical SAM domain protein GO Terms: GO:0003824, GO:0051536 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1407 Tuberculist Genomic Region
DVU0157 Thiamine-monophosphate kinase Details for DVU0157 - Thiamine-monophosphate kinase GO Terms: GO:0005524, GO:0000287, GO:0009228, GO:0009229, GO:0009030 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0157 Tuberculist Genomic Region	DVU3186 Uncharacterized protein Details for DVU3186 - Uncharacterized protein GO Terms: GO:0003677, GO:0006355 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU3186 Tuberculist Genomic Region

Motifs

Motif 1:

e-value: 2300 Motif 2:

e-value: 4000

Module Median Expression Profiles

Module Plots

Regulation

Regulator	Interaction	Influence Weight	Other Influences
DVU1730 DNA-binding protein	down-regulates	-0.13	DVU1730
DVU2567 Uncharacterized protein	down-regulates	-0.13	DVU2567
DVU2799 Transcriptional regulator, MarR family	up-regulates	0.12	DVU2799
DVU2953 Transcriptional regulator, GntR family	down-regulates	-0.12	DVU2953

GO Enrichment

Category: MF
Category	GO ID	GO Term	Annotated	Expected	Significant	p-value
MF	GO:0016854	racemase and epimerase activity	3	0.02	1	0.0163
MF	GO:0016857	racemase and epimerase activity, acting ...	3	0.02	1	0.0163
MF	GO:0030551	cyclic nucleotide binding	5	0.03	1	0.0271
MF	GO:0035438	cyclic-di-GMP binding	5	0.03	1	0.0271

Category: CC
Category	GO ID	GO Term	Annotated	Expected	Significant	p-value
CC	GO:0033281	TAT protein transport complex	4	0.02	1	0.0200
CC	GO:0043234	protein complex	10	0.05	1	0.0500

Essentiality

Comments

Log in to post comments