Desulfovibrio vulgaris Hildenborough Module 171 Residual: 0.39 | Syntrophy Portal

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Summary

Residual: 0.39 Score: -62.3648 version: dvh_cmonkey_11_Mar_02

Members

DVU0698 dTDP-4-dehydrorhamnose 3,5-epimerase Details for DVU0698 - dTDP-4-dehydrorhamnose 3,5-epimerase GO Terms: GO:0008830, GO:0009103 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0698 Tuberculist Genomic Region	DVU0886 Thioesterase family protein Details for DVU0886 - Thioesterase family protein GO Terms: GO:0016787 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0886 Tuberculist Genomic Region
DVU1075 Ribonuclease P protein component Details for DVU1075 - Ribonuclease P protein component GO Terms: GO:0004526, GO:0000049, GO:0008033 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1075 Tuberculist Genomic Region	DVU1778 Cation efflux family protein Details for DVU1778 - Cation efflux family protein GO Terms: GO:0008324, GO:0016021 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1778 Tuberculist Genomic Region
DVU1301 Uncharacterized protein Details for DVU1301 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1301 Tuberculist Genomic Region	DVU1849 Protein-L-isoaspartate O-methyltransferase Details for DVU1849 - Protein-L-isoaspartate O-methyltransferase GO Terms: GO:0005737, GO:0030091, GO:0004719 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1849 Tuberculist Genomic Region
DVU1427 Response regulator Details for DVU1427 - Response regulator GO Terms: GO:0000160 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1427 Tuberculist Genomic Region	DVU2179 ISDvu2, transposase OrfA Details for DVU2179 - ISDvu2, transposase OrfA GO Terms: GO:0043565, GO:0004803, GO:0006313 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2179 Tuberculist Genomic Region
DVU2200 Uncharacterized protein Details for DVU2200 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2200 Tuberculist Genomic Region	DVU2215 RNA-binding protein Details for DVU2215 - RNA-binding protein GO Terms: GO:0003676, GO:0000166 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2215 Tuberculist Genomic Region
DVU0817 Uncharacterized protein Details for DVU0817 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0817 Tuberculist Genomic Region	DVU2220 Uncharacterized protein Details for DVU2220 - Uncharacterized protein GO Terms: GO:0003677 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2220 Tuberculist Genomic Region

Motifs

Motif 1:

e-value: 120 Motif 2:

e-value: 17000

Module Median Expression Profiles

Module Plots

Regulation

Regulator	Interaction	Influence Weight	Other Influences
DVU0916 Redox-sensing transcriptional repressor Rex	up-regulates	0.18	DVU0916
DVU1517 Transcriptional regulator cII, putative	down-regulates	-0.14	DVU1517
DVU1645 Transcriptional regulator, ArsR family	up-regulates	0.10	DVU1645
DVU1759 Molybdenum-binding protein, HTH domain	up-regulates	0.11	DVU1759
DVU2036 Helix-turn-helix protein, CopG family	up-regulates	0.14	DVU2036
DVU2423 Transcriptional regulator, putative	down-regulates	-0.20	DVU2423
DVU2527 Transcriptional regulator, putative	up-regulates	0.17	DVU2527
[field_regulator_taxonomy_regulat_1]	down-regulates	-0.32	Formate

GO Enrichment

Category: MF
Category	GO ID	GO Term	Annotated	Expected	Significant	p-value
MF	GO:0016854	racemase and epimerase activity	3	0.01	1	0.0140
MF	GO:0016857	racemase and epimerase activity, acting ...	3	0.01	1	0.0140
MF	GO:0004519	endonuclease activity	5	0.02	1	0.0232
MF	GO:0008324	cation transmembrane transporter activit...	7	0.03	1	0.0324

Essentiality

Comments

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