Desulfovibrio vulgaris Hildenborough Module 187 Residual: 0.42

×

Error message

  • Unable to create CTools CSS cache directory. Check the permissions on your files directory.
  • Unable to create CTools CSS cache directory. Check the permissions on your files directory.

Summary

Residual: 0.42 Score: -50.8209 version: dvh_cmonkey_11_Mar_02

Members

DVU1351 Membrane protein, MarC family

Details for DVU1351 - Membrane protein, MarC family

GO Terms: GO:0016021

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1351

Tuberculist Genomic Region

DVU1020 HD domain/sensory box protein

Details for DVU1020 - HD domain/sensory box protein

GO Terms: GO:0004871

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1020

Tuberculist Genomic Region

DVU1361 Lipid A disaccharide synthase

Details for DVU1361 - Lipid A disaccharide synthase

GO Terms: GO:0009245, GO:0008915

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1361

Tuberculist Genomic Region

DVU1533 tRNA dimethylallyltransferase

Details for DVU1533 - tRNA dimethylallyltransferase

GO Terms: GO:0005524, GO:0052381, GO:0008033

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1533

Tuberculist Genomic Region

DVU1480 Conserved domain protein

Details for DVU1480 - Conserved domain protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1480

Tuberculist Genomic Region

DVU1688 1-acyl-sn-glycerol-3-phosphate acyltransferase, putative

Details for DVU1688 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, putative

GO Terms: GO:0016746

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1688

Tuberculist Genomic Region

DVU1859 Uncharacterized protein

Details for DVU1859 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1859

Tuberculist Genomic Region

DVU2409 Bacterial extracellular solute-binding proteins, family 3

Details for DVU2409 - Bacterial extracellular solute-binding proteins, family 3

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2409

Tuberculist Genomic Region

DVU1966 Uncharacterized protein

Details for DVU1966 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1966

Tuberculist Genomic Region

DVU2569 Peptidyl-prolyl cis-trans isomerase

Details for DVU2569 - Peptidyl-prolyl cis-trans isomerase

GO Terms: GO:0003755, GO:0006457

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2569

Tuberculist Genomic Region

DVU2114 Sigma-54 dependent transcriptional regulator/response regulator

Details for DVU2114 - Sigma-54 dependent transcriptional regulator/response regulator

GO Terms: GO:0005524, GO:0000160, GO:0006355, GO:0043565, GO:0006351

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2114

Tuberculist Genomic Region

DVU3080 Transcriptional regulator, putative

Details for DVU3080 - Transcriptional regulator, putative

GO Terms: GO:0003677, GO:0006355, GO:0008270

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3080

Tuberculist Genomic Region

DVU2128 Uncharacterized protein

Details for DVU2128 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2128

Tuberculist Genomic Region

DVUA0017 Uncharacterized protein

Details for DVUA0017 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVUA0017

Tuberculist Genomic Region

DVU2392 Type III secretion chaperone, CesT family

Details for DVU2392 - Type III secretion chaperone, CesT family

GO Terms: GO:0005737, GO:0009405, GO:0050708

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2392

Tuberculist Genomic Region

DVUA0067 Membrane protein, putative

Details for DVUA0067 - Membrane protein, putative

GO Terms: GO:0016020, GO:0016747

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVUA0067

Tuberculist Genomic Region

DVU0669 Uncharacterized protein

Details for DVU0669 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0669

Tuberculist Genomic Region

DVUA0068 Membrane protein, putative

Details for DVUA0068 - Membrane protein, putative

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVUA0068

Tuberculist Genomic Region

DVU1019 Conserved domain protein

Details for DVU1019 - Conserved domain protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1019

Tuberculist Genomic Region

Displaying 1 - 19 of 19

Motifs

Motif 1: e-value: 110 e-value: 1100

Module Plots

Regulation

Regulator Interaction Influence Weight Other Influences

DVU1964

Transcriptional regulator, rrf2 protein, putative
 up-regulates 0.14

DVU1964

DVU2036

Helix-turn-helix protein, CopG family
 up-regulates 0.11

DVU2036

DVU2633

Transcriptional regulator, putative
 up-regulates 0.11

DVU2633

DVUA0143

Nif-specific regulatory protein
 down-regulates -0.43

DVUA0143
[field_regulator_taxonomy_regulat_1] down-regulates -0.26

Formate
[field_regulator_taxonomy_regulat_1] down-regulates -0.37

Peroxide

GO Enrichment

Category: BP
Category GO ID GO Term Annotated Expected Significant p-value
BP GO:0006644 phospholipid metabolic process 5 0.01 1 0.0136
BP GO:0008654 phospholipid biosynthetic process 5 0.01 1 0.0136
BP GO:0008610 lipid biosynthetic process 10 0.03 1 0.0271
BP GO:0044255 cellular lipid metabolic process 10 0.03 1 0.0271
BP GO:0006629 lipid metabolic process 11 0.03 1 0.0298
BP GO:0016051 carbohydrate biosynthetic process 11 0.03 1 0.0298
BP GO:0044723 single-organism carbohydrate metabolic p... 16 0.04 1 0.0434
Category: MF
Category GO ID GO Term Annotated Expected Significant p-value
MF GO:0003755 peptidyl-prolyl cis-trans isomerase acti... 6 0.03 1 0.0280
MF GO:0016859 cis-trans isomerase activity 6 0.03 1 0.0280

Comments

Log in to post comments