Desulfovibrio vulgaris Hildenborough Module 203 Residual: 0.44

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Summary

Residual: 0.44 Score: -47.8778 version: dvh_cmonkey_11_Mar_02

Members

DVU2062 DNA helicase

Details for DVU2062 - DNA helicase

GO Terms: GO:0005524, GO:0004003, GO:0003677

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2062

Tuberculist Genomic Region

DVU1836 tRNA nucleotidyltransferase, putative

Details for DVU1836 - tRNA nucleotidyltransferase, putative

GO Terms: GO:0005524, GO:0003723, GO:0006396, GO:0016779

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1836

Tuberculist Genomic Region

DVU2218 Putative ribosome biogenesis GTPase RsgA

Details for DVU2218 - Putative ribosome biogenesis GTPase RsgA

GO Terms: GO:0005525, GO:0003924, GO:0046872

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2218

Tuberculist Genomic Region

DVU2295 Methyl-accepting chemotaxis protein

Details for DVU2295 - Methyl-accepting chemotaxis protein

GO Terms: GO:0006935, GO:0016021, GO:0000155

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2295

Tuberculist Genomic Region

DVU2424 Membrane protein, putative

Details for DVU2424 - Membrane protein, putative

GO Terms: GO:0016021

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2424

Tuberculist Genomic Region

DVU2906 UmuC protein

Details for DVU2906 - UmuC protein

GO Terms: GO:0006281, GO:0003887, GO:0003684

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2906

Tuberculist Genomic Region

DVU2517 Uncharacterized protein

Details for DVU2517 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2517

Tuberculist Genomic Region

DVU3132 Glycerol-3-phosphate dehydrogenase

Details for DVU3132 - Glycerol-3-phosphate dehydrogenase

GO Terms: GO:0009331, GO:0006072, GO:0052591

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3132

Tuberculist Genomic Region

DVU1385 Uncharacterized protein

Details for DVU1385 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1385

Tuberculist Genomic Region

DVU3142 Sigma-54 dependent transcriptional regulator

Details for DVU3142 - Sigma-54 dependent transcriptional regulator

GO Terms: GO:0005524, GO:0000155, GO:0006355, GO:0043565, GO:0006351

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3142

Tuberculist Genomic Region

DVU1431 Hpt domain protein/STAS domain protein

Details for DVU1431 - Hpt domain protein/STAS domain protein

GO Terms: GO:0000160, GO:0004871

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1431

Tuberculist Genomic Region

Displaying 1 - 11 of 11

Motifs

Motif 1: e-value: 1100 e-value: 4100

Module Plots

Regulation

Regulator Interaction Influence Weight Other Influences

DVU1156

Sigma-54 dependent transcriptional regulator, putative/response regulator
 up-regulates 0.18

DVU1156

DVU2086

Transcriptional regulator, GntR family
 up-regulates 0.35

DVU2086

DVU2114

Sigma-54 dependent transcriptional regulator/response regulator
 down-regulates -0.15

DVU2114

DVU2832

Transcriptional regulator cII, putative
 up-regulates 0.10

DVU2832

DVU3381

Transcriptional regulatory protein zraR
 up-regulates 0.10

DVU3381

GO Enrichment

Category: BP
Category GO ID GO Term Annotated Expected Significant p-value
BP GO:0050896 response to stimulus 77 0.63 3 0.0088
BP GO:0051716 cellular response to stimulus 44 0.36 2 0.0386
BP GO:0006281 DNA repair 5 0.04 1 0.0402
BP GO:0006974 cellular response to DNA damage stimulus 5 0.04 1 0.0402
Category: CC
Category GO ID GO Term Annotated Expected Significant p-value
CC GO:1902494 catalytic complex 5 0.03 1 0.0253
Category: MF
Category GO ID GO Term Annotated Expected Significant p-value
MF GO:0035639 purine ribonucleoside triphosphate bindi... 325 1.01 4 0.0041
MF GO:0001882 nucleoside binding 327 1.02 4 0.0042
MF GO:0001883 purine nucleoside binding 327 1.02 4 0.0042
MF GO:0032549 ribonucleoside binding 327 1.02 4 0.0042
MF GO:0032550 purine ribonucleoside binding 327 1.02 4 0.0042
MF GO:0032555 purine ribonucleotide binding 332 1.04 4 0.0045
MF GO:0017076 purine nucleotide binding 333 1.04 4 0.0045
MF GO:0032553 ribonucleotide binding 345 1.08 4 0.0052
MF GO:0097367 carbohydrate derivative binding 345 1.08 4 0.0052
MF GO:0043168 anion binding 371 1.16 4 0.0070
MF GO:0000166 nucleotide binding 377 1.18 4 0.0074
MF GO:1901265 nucleoside phosphate binding 377 1.18 4 0.0074
MF GO:0036094 small molecule binding 383 1.20 4 0.0079
MF GO:0043167 ion binding 422 1.32 4 0.0117
MF GO:0005524 ATP binding 301 0.94 3 0.0425
MF GO:0032559 adenyl ribonucleotide binding 303 0.95 3 0.0433
MF GO:0030554 adenyl nucleotide binding 304 0.95 3 0.0437

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