Desulfovibrio vulgaris Hildenborough Module 231 Residual: 0.46

×

Error message

  • Unable to create CTools CSS cache directory. Check the permissions on your files directory.
  • Unable to create CTools CSS cache directory. Check the permissions on your files directory.

Summary

Residual: 0.46 Score: -49.4167 version: dvh_cmonkey_11_Mar_02

Members

DVU1128 Lysozyme, putative

Details for DVU1128 - Lysozyme, putative

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1128

Tuberculist Genomic Region

DVU1120 Uncharacterized protein

Details for DVU1120 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1120

Tuberculist Genomic Region

DVU1129 Uncharacterized protein

Details for DVU1129 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1129

Tuberculist Genomic Region

DVU1135 Conserved domain protein

Details for DVU1135 - Conserved domain protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1135

Tuberculist Genomic Region

DVU1131 Uncharacterized protein

Details for DVU1131 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1131

Tuberculist Genomic Region

DVU1136 Host-nuclease inhibitor protein Gam, putative

Details for DVU1136 - Host-nuclease inhibitor protein Gam, putative

GO Terms: GO:0042262, GO:0003690

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1136

Tuberculist Genomic Region

DVU1142 Transcriptional regulator, putative

Details for DVU1142 - Transcriptional regulator, putative

GO Terms: GO:0043565

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1142

Tuberculist Genomic Region

DVU1139 Bacteriophage DNA transposition B protein, putative

Details for DVU1139 - Bacteriophage DNA transposition B protein, putative

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1139

Tuberculist Genomic Region

DVU2698 Lipoprotein, putative

Details for DVU2698 - Lipoprotein, putative

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2698

Tuberculist Genomic Region

DVU1141 Uncharacterized protein

Details for DVU1141 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1141

Tuberculist Genomic Region

DVU2699 Transglycosylase SLT domain protein

Details for DVU2699 - Transglycosylase SLT domain protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2699

Tuberculist Genomic Region

DVU1143 Uncharacterized protein

Details for DVU1143 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1143

Tuberculist Genomic Region

DVU2711 Major head subunit, putative

Details for DVU2711 - Major head subunit, putative

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2711

Tuberculist Genomic Region

DVU2688 Bacteriophage transposase A protein

Details for DVU2688 - Bacteriophage transposase A protein

GO Terms: GO:0003677, GO:0015074

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2688

Tuberculist Genomic Region

DVU1116 Uncharacterized protein

Details for DVU1116 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1116

Tuberculist Genomic Region

DVU2712 Uncharacterized protein

Details for DVU2712 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2712

Tuberculist Genomic Region

DVU1117 Uncharacterized protein

Details for DVU1117 - Uncharacterized protein

GO Terms: GO:0019028

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1117

Tuberculist Genomic Region

DVU2714 Uncharacterized protein

Details for DVU2714 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2714

Tuberculist Genomic Region

DVU1118 Uncharacterized protein

Details for DVU1118 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1118

Tuberculist Genomic Region

Displaying 1 - 19 of 19

Motifs

Motif 1: e-value: 430 e-value: 2900

Module Plots

Regulation

Regulator Interaction Influence Weight Other Influences

DVU0309

Transcriptional regulator, LysR family
 up-regulates 0.26

DVU0309
[field_regulator_taxonomy_regulat_1] up-regulates 0.67

DVU0597 knockout

DVU0679

Sigma-54 dependent transcriptional regulator/response regulator
 up-regulates 0.18

DVU0679

DVU2114

Sigma-54 dependent transcriptional regulator/response regulator
 down-regulates -0.15

DVU2114

DVU2423

Transcriptional regulator, putative
 up-regulates 0.11

DVU2423

DVU2819

Transcriptional regulator, TetR family
 up-regulates 0.16

DVU2819

DVU3255

Transcriptional regulator, CopG family
 down-regulates -0.20

DVU3255

GO Enrichment

Category: BP
Category GO ID GO Term Annotated Expected Significant p-value
BP GO:0009991 response to extracellular stimulus 3 0.01 1 0.0081
BP GO:0031668 cellular response to extracellular stimu... 3 0.01 1 0.0081
BP GO:0071496 cellular response to external stimulus 3 0.01 1 0.0081
BP GO:0033554 cellular response to stress 8 0.02 1 0.0217
BP GO:0006259 DNA metabolic process 17 0.05 1 0.0461
Category: CC
Category GO ID GO Term Annotated Expected Significant p-value
CC GO:0019012 virion 3 0.01 1 0.0076
CC GO:0019028 viral capsid 3 0.01 1 0.0076
CC GO:0044423 virion part 3 0.01 1 0.0076
Category: MF
Category GO ID GO Term Annotated Expected Significant p-value
MF GO:0003677 DNA binding 159 0.25 2 0.0150
MF GO:0043565 sequence-specific DNA binding 15 0.02 1 0.0230
MF GO:0003676 nucleic acid binding 222 0.35 2 0.0300

Comments

Log in to post comments