Desulfovibrio vulgaris Hildenborough Module 246 Residual: 0.41

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Summary

Residual: 0.41 Score: -59.5214 version: dvh_cmonkey_11_Mar_02

Members

DVU0475 Membrane protein, putative, truncation

Details for DVU0475 - Membrane protein, putative, truncation

GO Terms: GO:0016020, GO:0016747

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0475

Tuberculist Genomic Region

DVU1706 Uncharacterized protein

Details for DVU1706 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1706

Tuberculist Genomic Region

DVU1479 Uncharacterized protein

Details for DVU1479 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1479

Tuberculist Genomic Region

DVU1750 Uncharacterized protein

Details for DVU1750 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1750

Tuberculist Genomic Region

DVU0252 Uncharacterized protein

Details for DVU0252 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0252

Tuberculist Genomic Region

DVU1995 Anti-sigma factor antagonist

Details for DVU1995 - Anti-sigma factor antagonist

GO Terms: GO:0006355

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1995

Tuberculist Genomic Region

DVU0472 Uncharacterized protein

Details for DVU0472 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0472

Tuberculist Genomic Region

DVU2114 Sigma-54 dependent transcriptional regulator/response regulator

Details for DVU2114 - Sigma-54 dependent transcriptional regulator/response regulator

GO Terms: GO:0005524, GO:0000160, GO:0006355, GO:0043565, GO:0006351

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2114

Tuberculist Genomic Region

DVU0473 Uncharacterized protein

Details for DVU0473 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0473

Tuberculist Genomic Region

DVU2392 Type III secretion chaperone, CesT family

Details for DVU2392 - Type III secretion chaperone, CesT family

GO Terms: GO:0005737, GO:0009405, GO:0050708

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2392

Tuberculist Genomic Region

DVU0553 Uncharacterized protein

Details for DVU0553 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0553

Tuberculist Genomic Region

DVU2717 Uncharacterized protein

Details for DVU2717 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2717

Tuberculist Genomic Region

DVU0630 Uncharacterized protein

Details for DVU0630 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0630

Tuberculist Genomic Region

DVU2725 Membrane protein, putative

Details for DVU2725 - Membrane protein, putative

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2725

Tuberculist Genomic Region

DVU0670 Exopolysaccharide production protein, putative

Details for DVU0670 - Exopolysaccharide production protein, putative

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0670

Tuberculist Genomic Region

DVU2726 Uncharacterized protein

Details for DVU2726 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2726

Tuberculist Genomic Region

DVU1646 Arsenate reductase

Details for DVU1646 - Arsenate reductase

GO Terms: GO:0008794, GO:0004725

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1646

Tuberculist Genomic Region

Displaying 1 - 17 of 17

Motifs

Motif 1: e-value: 0.0085 e-value: 4.9

Module Plots

Regulation

Regulator Interaction Influence Weight Other Influences

DVU1331

Transcriptional regulator, LysR family
 up-regulates 0.15

DVU1331

DVU2644

Transcriptional regulator, GntR family
 up-regulates 0.14

DVU2644

DVU2802

Transcriptional regulator, GntR family
 up-regulates 0.17

DVU2802

DVU3142

Sigma-54 dependent transcriptional regulator
 down-regulates -0.19

DVU3142

GO Enrichment

Category: BP
Category GO ID GO Term Annotated Expected Significant p-value
BP GO:0006355 regulation of transcription, DNA-templat... 7 0.02 1 0.0190
BP GO:0009889 regulation of biosynthetic process 7 0.02 1 0.0190
BP GO:0010468 regulation of gene expression 7 0.02 1 0.0190
BP GO:0010556 regulation of macromolecule biosynthetic... 7 0.02 1 0.0190
BP GO:0019219 regulation of nucleobase-containing comp... 7 0.02 1 0.0190
BP GO:0019222 regulation of metabolic process 7 0.02 1 0.0190
BP GO:0031323 regulation of cellular metabolic process 7 0.02 1 0.0190
BP GO:0031326 regulation of cellular biosynthetic proc... 7 0.02 1 0.0190
BP GO:0051171 regulation of nitrogen compound metaboli... 7 0.02 1 0.0190
BP GO:0051252 regulation of RNA metabolic process 7 0.02 1 0.0190
BP GO:0060255 regulation of macromolecule metabolic pr... 7 0.02 1 0.0190
BP GO:0080090 regulation of primary metabolic process 7 0.02 1 0.0190
BP GO:2000112 regulation of cellular macromolecule bio... 7 0.02 1 0.0190
BP GO:2001141 regulation of RNA biosynthetic process 7 0.02 1 0.0190
BP GO:0006351 transcription, DNA-templated 9 0.02 1 0.0240
BP GO:0032774 RNA biosynthetic process 9 0.02 1 0.0240
BP GO:0010467 gene expression 14 0.04 1 0.0380
BP GO:0016070 RNA metabolic process 15 0.04 1 0.0410

Comments

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