Desulfovibrio vulgaris Hildenborough Module 263 Residual: 0.49

×

Error message

  • Unable to create CTools CSS cache directory. Check the permissions on your files directory.
  • Unable to create CTools CSS cache directory. Check the permissions on your files directory.

Summary

Residual: 0.49 Score: -36.4177 version: dvh_cmonkey_11_Mar_02

Members

DVU0030 Transcriptional regulator, GntR family

Details for DVU0030 - Transcriptional regulator, GntR family

GO Terms: GO:0003677, GO:0003824, GO:0030170, GO:0003700, GO:0006351

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0030

Tuberculist Genomic Region

DVU2007 Nuclease, putative

Details for DVU2007 - Nuclease, putative

GO Terms: GO:0004518, GO:0003676

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2007

Tuberculist Genomic Region

DVU1564 Uncharacterized protein

Details for DVU1564 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1564

Tuberculist Genomic Region

DVU2096 Uncharacterized protein

Details for DVU2096 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2096

Tuberculist Genomic Region

DVU2452 Uncharacterized protein

Details for DVU2452 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2452

Tuberculist Genomic Region

DVU2106 Sigma-54 dependent transcriptional regulator

Details for DVU2106 - Sigma-54 dependent transcriptional regulator

GO Terms: GO:0005524, GO:0003677, GO:0000155, GO:0006355, GO:0006351

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2106

Tuberculist Genomic Region

DVU2745 Uncharacterized protein

Details for DVU2745 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2745

Tuberculist Genomic Region

DVU2182 Uncharacterized protein

Details for DVU2182 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2182

Tuberculist Genomic Region

DVU0369 Uncharacterized protein

Details for DVU0369 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0369

Tuberculist Genomic Region

DVU2183 Uncharacterized protein

Details for DVU2183 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2183

Tuberculist Genomic Region

DVU0560 Conserved domain protein

Details for DVU0560 - Conserved domain protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0560

Tuberculist Genomic Region

DVU2198 Uncharacterized protein

Details for DVU2198 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2198

Tuberculist Genomic Region

DVU0618 Uncharacterized protein

Details for DVU0618 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0618

Tuberculist Genomic Region

DVU2451 L-lactate permease family protein

Details for DVU2451 - L-lactate permease family protein

GO Terms: GO:0005887, GO:0015129

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2451

Tuberculist Genomic Region

DVU1257 RNA-binding protein

Details for DVU1257 - RNA-binding protein

GO Terms: GO:0003676, GO:0000166

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1257

Tuberculist Genomic Region

DVU2651 Uncharacterized protein

Details for DVU2651 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2651

Tuberculist Genomic Region

DVU1561 Molybdenum-binding protein, HTH domain

Details for DVU1561 - Molybdenum-binding protein, HTH domain

GO Terms: GO:0003700

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1561

Tuberculist Genomic Region

DVU2718 Uncharacterized protein

Details for DVU2718 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2718

Tuberculist Genomic Region

DVU1690 Transcriptional regulator, TetR family

Details for DVU1690 - Transcriptional regulator, TetR family

GO Terms: GO:0003677, GO:0006355, GO:0006351

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1690

Tuberculist Genomic Region

DVU2778 Uncharacterized protein

Details for DVU2778 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2778

Tuberculist Genomic Region

DVU1705 Type I restriction-modification enzyme, S subunit

Details for DVU1705 - Type I restriction-modification enzyme, S subunit

GO Terms: GO:0003677, GO:0006304

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1705

Tuberculist Genomic Region

DVUA0028 Uncharacterized protein

Details for DVUA0028 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVUA0028

Tuberculist Genomic Region

DVU2000 Uncharacterized protein

Details for DVU2000 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2000

Tuberculist Genomic Region

Displaying 1 - 23 of 23

Motifs

Motif 1: e-value: 0.00000016 e-value: 0.036

Module Plots

Regulation

Regulator Interaction Influence Weight Other Influences

DVU1144

Transcriptional regulator, Cro/CI family
 up-regulates 0.12

DVU1144

DVU2114

Sigma-54 dependent transcriptional regulator/response regulator
 up-regulates 0.12

DVU2114

DVU2527

Transcriptional regulator, putative
 up-regulates 0.16

DVU2527

DVU2644

Transcriptional regulator, GntR family
 up-regulates 0.12

DVU2644

DVU3186

Uncharacterized protein
 up-regulates 0.11

DVU3186

GO Enrichment

Category: CC
Category GO ID GO Term Annotated Expected Significant p-value
CC GO:0005887 integral component of plasma membrane 9 0.02 1 0.0230
CC GO:0031226 intrinsic component of plasma membrane 9 0.02 1 0.0230
CC GO:0044459 plasma membrane part 16 0.04 1 0.0410
Category: MF
Category GO ID GO Term Annotated Expected Significant p-value
MF GO:0003676 nucleic acid binding 222 1.21 4 0.0200
MF GO:0003677 DNA binding 159 0.87 3 0.0450

Comments

Log in to post comments