Desulfovibrio vulgaris Hildenborough Module 329 Residual: 0.43 | Syntrophy Portal

×

Error message

Unable to create CTools CSS cache directory. Check the permissions on your files directory.
Unable to create CTools CSS cache directory. Check the permissions on your files directory.

Summary

Residual: 0.43 Score: -48.6669 version: dvh_cmonkey_11_Mar_02

Members

DVU0181 Molybdenum ABC transporter, permease protein Details for DVU0181 - Molybdenum ABC transporter, permease protein GO Terms: GO:0016021, GO:0015098 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0181 Tuberculist Genomic Region	DVU2334 Uncharacterized protein Details for DVU2334 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2334 Tuberculist Genomic Region
DVU0183 Methyl-accepting chemotaxis protein Details for DVU0183 - Methyl-accepting chemotaxis protein GO Terms: GO:0006935, GO:0016021, GO:0004871 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0183 Tuberculist Genomic Region	DVU2346 Uncharacterized protein Details for DVU2346 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2346 Tuberculist Genomic Region
DVU0283 AhpF family protein/thioredoxin reductase Details for DVU0283 - AhpF family protein/thioredoxin reductase GO Terms: GO:0050660, GO:0016491 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0283 Tuberculist Genomic Region	DVU2540 2-hydroxyglutaryl-CoA dehydratase, D-component Details for DVU2540 - 2-hydroxyglutaryl-CoA dehydratase, D-component GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2540 Tuberculist Genomic Region
DVU0442 PhoH-related protein Details for DVU0442 - PhoH-related protein GO Terms: GO:0005524 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0442 Tuberculist Genomic Region	DVU2541 CoA-substrate-specific enzyme activase, putative Details for DVU2541 - CoA-substrate-specific enzyme activase, putative GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2541 Tuberculist Genomic Region
DVU1416 Uncharacterized protein Details for DVU1416 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1416 Tuberculist Genomic Region	DVU2656 Uncharacterized protein Details for DVU2656 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2656 Tuberculist Genomic Region
DVU1698 Uncharacterized protein Details for DVU1698 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1698 Tuberculist Genomic Region	DVUA0048 Exopolysaccharide production protein, putative Details for DVUA0048 - Exopolysaccharide production protein, putative GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVUA0048 Tuberculist Genomic Region
DVU1714 Uncharacterized protein Details for DVU1714 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1714 Tuberculist Genomic Region	DVUA0057 Sigma-54 dependent transcriptional regulator/response regulator Details for DVUA0057 - Sigma-54 dependent transcriptional regulator/response regulator GO Terms: GO:0005524, GO:0000160, GO:0006355, GO:0043565, GO:0006351 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVUA0057 Tuberculist Genomic Region
DVU2271 Pyruvate formate-lyase activating enzyme, putative Details for DVU2271 - Pyruvate formate-lyase activating enzyme, putative GO Terms: GO:0051539, GO:0005737, GO:0006006, GO:0016829, GO:0016491 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2271 Tuberculist Genomic Region

Motifs

Motif 1:

e-value: 17000 Motif 2:

e-value: 8700

Module Median Expression Profiles

Module Plots

Regulation

Regulator	Interaction	Influence Weight	Other Influences
DVU0679 Sigma-54 dependent transcriptional regulator/response regulator	up-regulates	0.16	DVU0679
DVU1063 Transcriptional regulatory protein	up-regulates	0.16	DVU1063
DVU1754 Uncharacterized protein	up-regulates	0.17	DVU1754
DVU2097 Transcriptional regulator, putative	down-regulates	-0.22	DVU2097
[field_regulator_taxonomy_regulat_1]	down-regulates	-0.15	Salt-Stress Evolved Strain

GO Enrichment

Category: BP
Category	GO ID	GO Term	Annotated	Expected	Significant	p-value
BP	GO:0006935	chemotaxis	18	0.05	1	0.0490
BP	GO:0042330	taxis	18	0.05	1	0.0490

Category: MF
Category	GO ID	GO Term	Annotated	Expected	Significant	p-value
MF	GO:0050660	flavin adenine dinucleotide binding	10	0.03	1	0.0310

Essentiality

Comments

Log in to post comments