Desulfovibrio vulgaris Hildenborough Module 333 Residual: 0.27 | Syntrophy Portal

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Summary

Residual: 0.27 Score: -96.8777 version: dvh_cmonkey_11_Mar_02

Members

DVU1119 Virion morphogenesis protein Details for DVU1119 - Virion morphogenesis protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1119 Tuberculist Genomic Region	DVU1316 30S ribosomal protein S14 type Z Details for DVU1316 - 30S ribosomal protein S14 type Z GO Terms: GO:0019843, GO:0005840, GO:0003735, GO:0006412, GO:0008270 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1316 Tuberculist Genomic Region
DVU1310 50S ribosomal protein L16 Details for DVU1310 - 50S ribosomal protein L16 GO Terms: GO:0019843, GO:0005840, GO:0003735, GO:0000049, GO:0006412 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1310 Tuberculist Genomic Region	DVU1317 30S ribosomal protein S8 Details for DVU1317 - 30S ribosomal protein S8 GO Terms: GO:0019843, GO:0005840, GO:0003735, GO:0006412 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1317 Tuberculist Genomic Region
DVU1311 50S ribosomal protein L29 Details for DVU1311 - 50S ribosomal protein L29 GO Terms: GO:0005840, GO:0003735, GO:0006412 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1311 Tuberculist Genomic Region	DVU1318 50S ribosomal protein L6 Details for DVU1318 - 50S ribosomal protein L6 GO Terms: GO:0019843, GO:0005840, GO:0003735, GO:0006412 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1318 Tuberculist Genomic Region
DVU1312 30S ribosomal protein S17 Details for DVU1312 - 30S ribosomal protein S17 GO Terms: GO:0019843, GO:0005840, GO:0003735, GO:0006412 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1312 Tuberculist Genomic Region	DVU1319 50S ribosomal protein L18 Details for DVU1319 - 50S ribosomal protein L18 GO Terms: GO:0019843, GO:0005840, GO:0003735, GO:0006412 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1319 Tuberculist Genomic Region
DVU1313 50S ribosomal protein L14 Details for DVU1313 - 50S ribosomal protein L14 GO Terms: GO:0015934, GO:0019843, GO:0003735, GO:0006412 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1313 Tuberculist Genomic Region

Motifs

Motif 1:

Motif 2:

Module Median Expression Profiles

Module Plots

Regulation

Regulator	Interaction	Influence Weight	Other Influences
DVU0744 Sigma-54 dependent transcriptional regulator/response regulator	down-regulates	-0.53	DVU0744
DVU2394 Sigma-54 dependent transcriptional regulator/response regulator	down-regulates	-0.37	DVU2394
DVU2802 Transcriptional regulator, GntR family	down-regulates	-0.43	DVU2802
DVU2835 Transcriptional regulator, putative	down-regulates	-0.54	DVU2835
DVU3142 Sigma-54 dependent transcriptional regulator	down-regulates	-0.40	DVU3142
DVU3220 Sigma-54 dependent transcriptional regulator/response regulator	down-regulates	-0.25	DVU3220

GO Enrichment

Category: CC
Category	GO ID	GO Term	Annotated	Expected	Significant	p-value
CC	GO:0005840	ribosome	23	0.12	2	0.0033
CC	GO:0030529	ribonucleoprotein complex	23	0.12	2	0.0033
CC	GO:0043229	intracellular organelle	23	0.12	2	0.0033
CC	GO:0043232	intracellular non-membrane-bounded organ...	23	0.12	2	0.0033
CC	GO:0044444	cytoplasmic part	27	0.14	2	0.0046
CC	GO:0032991	macromolecular complex	33	0.17	2	0.0069
CC	GO:0043226	organelle	48	0.24	2	0.0146
CC	GO:0043228	non-membrane-bounded organelle	48	0.24	2	0.0146
CC	GO:0015934	large ribosomal subunit	7	0.04	1	0.0354
CC	GO:0044391	ribosomal subunit	8	0.04	1	0.0403
CC	GO:0044446	intracellular organelle part	8	0.04	1	0.0403
CC	GO:0005737	cytoplasm	86	0.44	2	0.0475

Category: MF
Category	GO ID	GO Term	Annotated	Expected	Significant	p-value
MF	GO:0097159	organic cyclic compound binding	611	2.86	6	0.0120
MF	GO:1901363	heterocyclic compound binding	611	2.86	6	0.0120

Essentiality

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