Desulfovibrio vulgaris Hildenborough Module 341 Residual: 0.48

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Summary

Residual: 0.48 Score: -37.1271 version: dvh_cmonkey_11_Mar_02

Members

DVU0009 TRAP transporter, DctM subunit

Details for DVU0009 - TRAP transporter, DctM subunit

GO Terms: GO:0016021

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0009

Tuberculist Genomic Region

DVU1858 Cold shock domain protein

Details for DVU1858 - Cold shock domain protein

GO Terms: GO:0003677, GO:0005737, GO:0006355

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1858

Tuberculist Genomic Region

DVU0067 Uncharacterized protein

Details for DVU0067 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0067

Tuberculist Genomic Region

DVU2277 Uncharacterized protein

Details for DVU2277 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2277

Tuberculist Genomic Region

DVU0102 Cation ABC transporter, periplasmic binding protein

Details for DVU0102 - Cation ABC transporter, periplasmic binding protein

GO Terms: GO:0046872, GO:0030001

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0102

Tuberculist Genomic Region

DVU2283 Uncharacterized protein

Details for DVU2283 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2283

Tuberculist Genomic Region

DVU0351 Cytidine 5'monophosphate N-acetylneuraminic acid synthetase, putative/polysaccharide biosynthesis protein

Details for DVU0351 - Cytidine 5'monophosphate N-acetylneuraminic acid synthetase, putative/polysaccharide biosynthesis protein

GO Terms: GO:0030246, GO:0030259, GO:0009103, GO:0016758

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0351

Tuberculist Genomic Region

DVU2336 Carboxyl-terminal protease

Details for DVU2336 - Carboxyl-terminal protease

GO Terms: GO:0008236

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2336

Tuberculist Genomic Region

DVU0381 Na+/H+ antiporter NhaC

Details for DVU0381 - Na+/H+ antiporter NhaC

GO Terms: GO:0015297, GO:0016021

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0381

Tuberculist Genomic Region

DVU2855 Tail/DNA circulation protein, putative

Details for DVU2855 - Tail/DNA circulation protein, putative

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2855

Tuberculist Genomic Region

DVU0448 GDP-mannose 4,6-dehydratase

Details for DVU0448 - GDP-mannose 4,6-dehydratase

GO Terms: GO:0008446, GO:0019673, GO:0070401

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0448

Tuberculist Genomic Region

DVU2871 Minor capsid protein C

Details for DVU2871 - Minor capsid protein C

GO Terms: GO:0008233

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2871

Tuberculist Genomic Region

DVU1035 Glucokinase, putative

Details for DVU1035 - Glucokinase, putative

GO Terms: GO:0005524, GO:0004340, GO:0006096

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1035

Tuberculist Genomic Region

DVU2874 Uncharacterized protein

Details for DVU2874 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2874

Tuberculist Genomic Region

DVU1128 Lysozyme, putative

Details for DVU1128 - Lysozyme, putative

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1128

Tuberculist Genomic Region

DVU2992 Glycosyl transferase, group 2 family protein

Details for DVU2992 - Glycosyl transferase, group 2 family protein

GO Terms: GO:0016740

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2992

Tuberculist Genomic Region

DVU1129 Uncharacterized protein

Details for DVU1129 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1129

Tuberculist Genomic Region

DVU3081 Membrane protein, putative

Details for DVU3081 - Membrane protein, putative

GO Terms: GO:0016021

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3081

Tuberculist Genomic Region

DVU1239 Membrane protein, putative

Details for DVU1239 - Membrane protein, putative

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1239

Tuberculist Genomic Region

DVU3108 Na+/H+ antiporter NhaC

Details for DVU3108 - Na+/H+ antiporter NhaC

GO Terms: GO:0015297, GO:0016021

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3108

Tuberculist Genomic Region

DVU1446 Heptosyltransferase family protein

Details for DVU1446 - Heptosyltransferase family protein

GO Terms: GO:0016757

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1446

Tuberculist Genomic Region

DVU3110 L-aspartate oxidase, putative

Details for DVU3110 - L-aspartate oxidase, putative

GO Terms: GO:0016491

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3110

Tuberculist Genomic Region

DVU1451 Response regulator

Details for DVU1451 - Response regulator

GO Terms: GO:0003824, GO:0000160

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1451

Tuberculist Genomic Region

DVU3267 Uncharacterized protein

Details for DVU3267 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3267

Tuberculist Genomic Region

DVU1508 Uncharacterized protein

Details for DVU1508 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1508

Tuberculist Genomic Region

DVU3325 Uncharacterized protein

Details for DVU3325 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3325

Tuberculist Genomic Region

DVU1810 Uncharacterized protein

Details for DVU1810 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1810

Tuberculist Genomic Region

DVUA0096 Major facilitator superfamily protein

Details for DVUA0096 - Major facilitator superfamily protein

GO Terms: GO:0016021, GO:0055085, GO:0005215

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVUA0096

Tuberculist Genomic Region

Displaying 1 - 28 of 28

Motifs

Motif 1: e-value: 110 e-value: 29000

Module Plots

Regulation

Regulator Interaction Influence Weight Other Influences

DVU0309

Transcriptional regulator, LysR family
 up-regulates 0.22

DVU0309

DVU1142

Transcriptional regulator, putative
 up-regulates 0.13

DVU1142

DVU2557

Bifunctional ligase/repressor BirA
up-regulates 0.26

DVU2557

DVU2644

Transcriptional regulator, GntR family
 down-regulates -0.15

DVU2644

DVU2953

Transcriptional regulator, GntR family
 up-regulates 0.20

DVU2953

DVUA0100

Sigma-54 dependent transcriptional regulator
 down-regulates -0.12

DVUA0100

GO Enrichment

Category: MF
Category GO ID GO Term Annotated Expected Significant p-value
MF GO:0015297 antiporter activity 4 0.04 2 0.0006
MF GO:0015291 secondary active transmembrane transport... 8 0.08 2 0.0026
MF GO:0022804 active transmembrane transporter activit... 13 0.13 2 0.0070
MF GO:0008233 peptidase activity 20 0.20 2 0.0163
MF GO:0022857 transmembrane transporter activity 25 0.25 2 0.0250
MF GO:0030246 carbohydrate binding 4 0.04 1 0.0400
MF GO:0005215 transporter activity 33 0.33 2 0.0421
MF GO:0008236 serine-type peptidase activity 5 0.05 1 0.0498
MF GO:0017171 serine hydrolase activity 5 0.05 1 0.0498

Comments

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