Desulfovibrio vulgaris Hildenborough Module 343 Residual: 0.43

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Summary

Residual: 0.43 Score: -54.4103 version: dvh_cmonkey_11_Mar_02

Members

DVU0259 DNA-binding response regulator

Details for DVU0259 - DNA-binding response regulator

GO Terms: GO:0003677, GO:0000160

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0259

Tuberculist Genomic Region

DVU1470 Peptidylprolyl isomerase

Details for DVU1470 - Peptidylprolyl isomerase

GO Terms: GO:0003755

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1470

Tuberculist Genomic Region

DVU0267 Uncharacterized protein

Details for DVU0267 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0267

Tuberculist Genomic Region

DVU1762 Membrane protein, putative

Details for DVU1762 - Membrane protein, putative

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1762

Tuberculist Genomic Region

DVU0056 Chemotaxis protein CheV

Details for DVU0056 - Chemotaxis protein CheV

GO Terms: GO:0006935, GO:0005622, GO:0000160, GO:0004871

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0056

Tuberculist Genomic Region

DVU1796 Uncharacterized protein

Details for DVU1796 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1796

Tuberculist Genomic Region

DVU0074 Polysaccharide biosynthesis domain protein

Details for DVU0074 - Polysaccharide biosynthesis domain protein

GO Terms: GO:0008830, GO:0009103

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0074

Tuberculist Genomic Region

DVU2227 Uncharacterized protein

Details for DVU2227 - Uncharacterized protein

GO Terms: GO:0035438

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2227

Tuberculist Genomic Region

DVU0222 Uncharacterized protein

Details for DVU0222 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0222

Tuberculist Genomic Region

DVU2443 Uncharacterized protein

Details for DVU2443 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2443

Tuberculist Genomic Region

DVU0268 Uncharacterized protein

Details for DVU0268 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0268

Tuberculist Genomic Region

DVU2847 Uncharacterized protein

Details for DVU2847 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2847

Tuberculist Genomic Region

DVU0281 Exopolysaccharide biosynthesis protein, putative

Details for DVU0281 - Exopolysaccharide biosynthesis protein, putative

GO Terms: GO:0016021, GO:0005886, GO:0000271, GO:0016740

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0281

Tuberculist Genomic Region

DVU3039 Uncharacterized protein

Details for DVU3039 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3039

Tuberculist Genomic Region

DVU0945 Histidine kinase

Details for DVU0945 - Histidine kinase

GO Terms: GO:0005524, GO:0016020, GO:0000155

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0945

Tuberculist Genomic Region

DVU3182 Chemoreceptor protein A

Details for DVU3182 - Chemoreceptor protein A

GO Terms: GO:0006935, GO:0016021, GO:0000155, GO:0005886

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3182

Tuberculist Genomic Region

DVU1190 Sensory box/GGDEF domain/EAL domain protein

Details for DVU1190 - Sensory box/GGDEF domain/EAL domain protein

GO Terms: GO:0000155

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1190

Tuberculist Genomic Region

DVU3375 Cell division ATP-binding protein FtsE, putative

Details for DVU3375 - Cell division ATP-binding protein FtsE, putative

GO Terms: GO:0005524, GO:0016887, GO:0051301

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3375

Tuberculist Genomic Region

Displaying 1 - 18 of 18

Motifs

Motif 1: e-value: 0.0013 e-value: 1.2

Module Plots

Regulation

Regulator Interaction Influence Weight Other Influences

DVU1754

Uncharacterized protein
 down-regulates -0.13

DVU1754

DVU2114

Sigma-54 dependent transcriptional regulator/response regulator
 up-regulates 0.14

DVU2114

DVU2633

Transcriptional regulator, putative
 up-regulates 0.17

DVU2633

DVU2836

Uncharacterized protein
 up-regulates 0.19

DVU2836

DVU3186

Uncharacterized protein
 up-regulates 0.22

DVU3186

GO Enrichment

Category: BP
Category GO ID GO Term Annotated Expected Significant p-value
BP GO:0006935 chemotaxis 18 0.10 2 0.0023
BP GO:0042330 taxis 18 0.10 2 0.0023
BP GO:0040011 locomotion 19 0.10 2 0.0025
BP GO:0042221 response to chemical 19 0.10 2 0.0025
BP GO:0009605 response to external stimulus 23 0.12 2 0.0037
BP GO:0050896 response to stimulus 77 0.42 2 0.0431
Category: MF
Category GO ID GO Term Annotated Expected Significant p-value
MF GO:0016853 isomerase activity 17 0.09 2 0.0033
MF GO:0016854 racemase and epimerase activity 3 0.02 1 0.0163
MF GO:0016857 racemase and epimerase activity, acting ... 3 0.02 1 0.0163
MF GO:0030551 cyclic nucleotide binding 5 0.03 1 0.0271
MF GO:0035438 cyclic-di-GMP binding 5 0.03 1 0.0271
MF GO:0003755 peptidyl-prolyl cis-trans isomerase acti... 6 0.03 1 0.0324
MF GO:0016859 cis-trans isomerase activity 6 0.03 1 0.0324

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