Methanococcus maripaludis S2 Module 18 Residual: 0.13

×

Error message

  • Unable to create CTools CSS cache directory. Check the permissions on your files directory.
  • Unable to create CTools CSS cache directory. Check the permissions on your files directory.

Summary

Residual: 0.13 Score: -28.0471 version: mmp_cmonkey_11_Oct_11

Members

MMP0158 conserved hypothetical protein (NCBI)

Details for MMP0158 - conserved hypothetical protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0158

Tuberculist Genomic Region

MMP0577 30S ribosomal protein S17E (NCBI)

Details for MMP0577 - 30S ribosomal protein S17E (NCBI)

GO Terms: GO:0006412, GO:0005840, GO:0003735

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0577

Tuberculist Genomic Region

MMP0159 LSU ribosomal protein L39E (NCBI)

Details for MMP0159 - LSU ribosomal protein L39E (NCBI)

GO Terms: GO:0006412, GO:0005840, GO:0003735

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0159

Tuberculist Genomic Region

MMP0578 Chorismate mutase (NCBI)

Details for MMP0578 - Chorismate mutase (NCBI)

GO Terms: GO:0009073, GO:0004106

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0578

Tuberculist Genomic Region

MMP0259 LSU ribosomal protein L10E (NCBI)

Details for MMP0259 - LSU ribosomal protein L10E (NCBI)

GO Terms: GO:0006414, GO:0042254, GO:0005622

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0259

Tuberculist Genomic Region

MMP0625 KOW motif (NCBI)

Details for MMP0625 - KOW motif (NCBI)

GO Terms: GO:0006412, GO:0005840, GO:0003735

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0625

Tuberculist Genomic Region

MMP0260 LSU ribosomal protein L1P (NCBI)

Details for MMP0260 - LSU ribosomal protein L1P (NCBI)

GO Terms: GO:0006412, GO:0005840, GO:0003735

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0260

Tuberculist Genomic Region

MMP0626 cytidylate kinase (NCBI)

Details for MMP0626 - cytidylate kinase (NCBI)

GO Terms: GO:0006139, GO:0005524, GO:0004127

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0626

Tuberculist Genomic Region

MMP0298 LSU ribosomal protein L15E (NCBI)

Details for MMP0298 - LSU ribosomal protein L15E (NCBI)

GO Terms: GO:0006412, GO:0005840, GO:0003735

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0298

Tuberculist Genomic Region

MMP1147 Ribosomal protein L37e (NCBI)

Details for MMP1147 - Ribosomal protein L37e (NCBI)

GO Terms: GO:0006412, GO:0005840, GO:0003735

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1147

Tuberculist Genomic Region

MMP0576 Dihydrodipicolinate synthase (NCBI)

Details for MMP0576 - Dihydrodipicolinate synthase (NCBI)

GO Terms: GO:0019877, GO:0008840

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0576

Tuberculist Genomic Region

MMP0627 Ribosomal protein L34e (NCBI)

Details for MMP0627 - Ribosomal protein L34e (NCBI)

GO Terms: GO:0006412, GO:0005840, GO:0003735

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0627

Tuberculist Genomic Region

Displaying 1 - 12 of 12

Motifs

Motif 1: e-value: 18 e-value: 190

Module Plots

Regulation

Regulator Interaction Influence Weight Other Influences

MMP0568

transcriptional regulator related protein (NCBI)
 up-regulates 0.50

MMP0568

MMP0097

Transcriptional regulator protein, Helix-turn-helix motif (NCBI)

MMP0674

Helix-turn-helix DNA binding protein (NCBI)
 down-regulates -0.30

MMP0097

MMP0674

MMP0052

Conserved Hypothetical protein with 2 CBS domains (NCBI)

MMP0257

TATA-binding protein (TBP) (NCBI)
 down-regulates -0.25

MMP0052

MMP0257

MMP0052

Conserved Hypothetical protein with 2 CBS domains (NCBI)
 down-regulates -0.14

MMP0052

MMP0097

Transcriptional regulator protein, Helix-turn-helix motif (NCBI)

MMP1052

conserved hypothetical archaeal protein (NCBI)
 down-regulates -0.10

MMP0097

MMP1052

GO Enrichment

Category: BP
Category GO ID GO Term Annotated Expected Significant p-value
BP GO:0043648 dicarboxylic acid metabolic process 3 0.02 1 0.0156
Category: CC
Category GO ID GO Term Annotated Expected Significant p-value
CC GO:0032991 macromolecular complex 41 1.36 6 0.0001
CC GO:0005737 cytoplasm 67 2.22 6 0.0022
CC GO:0044424 intracellular part 71 2.35 6 0.0032
CC GO:0005622 intracellular 76 2.52 6 0.0049
CC GO:0005623 cell 85 2.82 6 0.0097
CC GO:0044464 cell part 85 2.82 6 0.0097
Category: MF
Category GO ID GO Term Annotated Expected Significant p-value
MF GO:0019843 rRNA binding 26 0.13 2 0.0063
MF GO:0003723 RNA binding 57 0.29 2 0.0291
MF GO:0070180 large ribosomal subunit rRNA binding 6 0.03 1 0.0307

Comments

Log in to post comments