Methanococcus maripaludis S2 Module 48 Residual: 0.31

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Summary

Residual: 0.31 Score: -14.3146 version: mmp_cmonkey_11_Oct_11

Members

MMP0533 Conserved hypothetical Archael protein (NCBI)

Details for MMP0533 - Conserved hypothetical Archael protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0533

Tuberculist Genomic Region

MMP0502 hypothetical protein (NCBI)

Details for MMP0502 - hypothetical protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0502

Tuberculist Genomic Region

MMP0192 hypothetical protein (NCBI)

Details for MMP0192 - hypothetical protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0192

Tuberculist Genomic Region

MMP0680 Uracil Phosphoribosyltransferase (NCBI)

Details for MMP0680 - Uracil Phosphoribosyltransferase (NCBI)

GO Terms: GO:0009116, GO:0006223, GO:0004845

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0680

Tuberculist Genomic Region

MMP0275 Conserved hypothetical protein (NCBI)

Details for MMP0275 - Conserved hypothetical protein (NCBI)

GO Terms: GO:0006825, GO:0042597, GO:0005507

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0275

Tuberculist Genomic Region

MMP0851 conserved hypothetical protein (NCBI)

Details for MMP0851 - conserved hypothetical protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0851

Tuberculist Genomic Region

MMP0466 hypothetical (NCBI)

Details for MMP0466 - hypothetical (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0466

Tuberculist Genomic Region

MMP1193 hypothetical protein (NCBI)

Details for MMP1193 - hypothetical protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1193

Tuberculist Genomic Region

MMP0467 hypothetical protein (NCBI)

Details for MMP0467 - hypothetical protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0467

Tuberculist Genomic Region

MMP1194 Collagen triple helix repeat:Surface protein from Gram-positive cocci, anchor region (NCBI)

Details for MMP1194 - Collagen triple helix repeat:Surface protein from Gram-positive cocci, anchor region (NCBI)

GO Terms: GO:0006817, GO:0005737

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1194

Tuberculist Genomic Region

MMP0468 hypothetical protein (NCBI)

Details for MMP0468 - hypothetical protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0468

Tuberculist Genomic Region

MMP1481 Cobalamin biosynthesis protein (NCBI)

Details for MMP1481 - Cobalamin biosynthesis protein (NCBI)

GO Terms: GO:0009236, GO:0016021

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1481

Tuberculist Genomic Region

MMP0469 hypothetical protein (NCBI)

Details for MMP0469 - hypothetical protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0469

Tuberculist Genomic Region

MMP1482 conserved hypothetical protein (NCBI)

Details for MMP1482 - conserved hypothetical protein (NCBI)

GO Terms: GO:0006824, GO:0009236, GO:0016020, GO:0015087

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1482

Tuberculist Genomic Region

MMP0470 MCM family related protein (NCBI)

Details for MMP0470 - MCM family related protein (NCBI)

GO Terms: GO:0006270, GO:0005524, GO:0008094, GO:0003677

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0470

Tuberculist Genomic Region

MMP1483 Cobalt transport protein Q (NCBI)

Details for MMP1483 - Cobalt transport protein Q (NCBI)

GO Terms: GO:0006824, GO:0009236, GO:0015087

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1483

Tuberculist Genomic Region

MMP0471 conserved hypothetical protein (NCBI)

Details for MMP0471 - conserved hypothetical protein (NCBI)

GO Terms: GO:0045449

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0471

Tuberculist Genomic Region

MMP1602 hypothetical protein (NCBI)

Details for MMP1602 - hypothetical protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1602

Tuberculist Genomic Region

MMP0472 Probable integrase/recombinase (NCBI)

Details for MMP0472 - Probable integrase/recombinase (NCBI)

GO Terms: GO:0006310, GO:0015074, GO:0003677

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0472

Tuberculist Genomic Region

Displaying 1 - 19 of 19

Motifs

Motif 1: e-value: 0.0095 e-value: 780

Module Plots

Regulation

Regulator Interaction Influence Weight Other Influences

MMP0209

Conserved hypothetical protein (NCBI)

Formate

 down-regulates -0.56

MMP0209

Formate

MMP0791

Transcriptional regulator, TetR Family Member (NCBI)

MMP1137

Lrp-Like Transcriptional regulatory proteins, AsnC family (NCBI)
 up-regulates 0.29

MMP0791

MMP1137

MMP0031

conserved hypothetical archeal protein (NCBI)

MMP1137

Lrp-Like Transcriptional regulatory proteins, AsnC family (NCBI)
 up-regulates 0.27

MMP0031

MMP1137

GO Enrichment

Category: BP
Category GO ID GO Term Annotated Expected Significant p-value
BP GO:0006355 regulation of transcription, DNA-templat... 4 0.04 1 0.0410
BP GO:0019219 regulation of nucleobase-containing comp... 4 0.04 1 0.0410
BP GO:0051171 regulation of nitrogen compound metaboli... 4 0.04 1 0.0410
BP GO:0051252 regulation of RNA metabolic process 4 0.04 1 0.0410
BP GO:1903506 regulation of nucleic acid-templated tra... 4 0.04 1 0.0410
BP GO:2001141 regulation of RNA biosynthetic process 4 0.04 1 0.0410
Category: CC
Category GO ID GO Term Annotated Expected Significant p-value
CC GO:0043190 ATP-binding cassette (ABC) transporter c... 3 0.03 2 0.0002
CC GO:0044459 plasma membrane part 3 0.03 2 0.0002
CC GO:0098533 ATPase dependent transmembrane transport... 3 0.03 2 0.0002
CC GO:1902494 catalytic complex 3 0.03 2 0.0002
CC GO:1902495 transmembrane transporter complex 3 0.03 2 0.0002
CC GO:1990351 transporter complex 3 0.03 2 0.0002
CC GO:0005886 plasma membrane 4 0.04 2 0.0004
CC GO:0043234 protein complex 5 0.06 2 0.0006
CC GO:0071944 cell periphery 8 0.09 2 0.0017

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