Methanococcus maripaludis S2 Module 75 Residual: 0.32

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Summary

Residual: 0.32 Score: -14.695 version: mmp_cmonkey_11_Oct_11

Members

MMP0008 DNA polymerase, archaeal type II, small subunit (NCBI)

Details for MMP0008 - DNA polymerase, archaeal type II, small subunit (NCBI)

GO Terms: GO:0006260, GO:0005634, GO:0003676, GO:0003893, GO:0016448, GO:0016452, GO:0003889, GO:0003894, GO:0008408, GO:0016449, GO:0019984, GO:0003890, GO:0003895, GO:0015999, GO:0016450, GO:0003891, GO:0016000, GO:0016451

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0008

Tuberculist Genomic Region

MMP0636 conserved hypothetical protein (NCBI)

Details for MMP0636 - conserved hypothetical protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0636

Tuberculist Genomic Region

MMP0009 putative DNA primase large subunit (NCBI)

Details for MMP0009 - putative DNA primase large subunit (NCBI)

GO Terms: GO:0006269, GO:0005658, GO:0003896

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0009

Tuberculist Genomic Region

MMP0723 conserved hypothetical protein (NCBI)

Details for MMP0723 - conserved hypothetical protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0723

Tuberculist Genomic Region

MMP0113 conserved hypothetical protein (NCBI)

Details for MMP0113 - conserved hypothetical protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0113

Tuberculist Genomic Region

MMP0725 putative integral membrane protein (NCBI)

Details for MMP0725 - putative integral membrane protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0725

Tuberculist Genomic Region

MMP0119 Biotin--protein ligase (NCBI)

Details for MMP0119 - Biotin--protein ligase (NCBI)

GO Terms: GO:0006464, GO:0004077

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0119

Tuberculist Genomic Region

MMP0909 conserved hypothetical protein (NCBI)

Details for MMP0909 - conserved hypothetical protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0909

Tuberculist Genomic Region

MMP0235 conserved hypothetical protein (NCBI)

Details for MMP0235 - conserved hypothetical protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0235

Tuberculist Genomic Region

MMP0934 conserved hypothetical archaeal protein (NCBI)

Details for MMP0934 - conserved hypothetical archaeal protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0934

Tuberculist Genomic Region

MMP0236 conserved hypothetical archaeal protein (NCBI)

Details for MMP0236 - conserved hypothetical archaeal protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0236

Tuberculist Genomic Region

MMP1141 Lhr-like RNA helicase (NCBI)

Details for MMP1141 - Lhr-like RNA helicase (NCBI)

GO Terms: GO:0003676, GO:0005524, GO:0008026

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1141

Tuberculist Genomic Region

MMP0237 Conserved hypothetical protein (NCBI)

Details for MMP0237 - Conserved hypothetical protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0237

Tuberculist Genomic Region

MMP1162 Flavodoxin:Beta-lactamase-like (NCBI)

Details for MMP1162 - Flavodoxin:Beta-lactamase-like (NCBI)

GO Terms: GO:0010181, GO:0016491, GO:0016787

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1162

Tuberculist Genomic Region

MMP0240 conserved hypothetical archaeal protein (NCBI)

Details for MMP0240 - conserved hypothetical archaeal protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0240

Tuberculist Genomic Region

MMP0239 conserved hypothetical archaeal protein (NCBI)

Details for MMP0239 - conserved hypothetical archaeal protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0239

Tuberculist Genomic Region

MMP0392 Phosphoribosylamine--glycine ligase (NCBI)

Details for MMP0392 - Phosphoribosylamine--glycine ligase (NCBI)

GO Terms: GO:0009113, GO:0005524, GO:0004637

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0392

Tuberculist Genomic Region

MMP0241 conserved hypothetical archaeal protein (NCBI)

Details for MMP0241 - conserved hypothetical archaeal protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0241

Tuberculist Genomic Region

MMP0452 hypothetical protein (NCBI)

Details for MMP0452 - hypothetical protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0452

Tuberculist Genomic Region

MMP0453 Neutral zinc metallopeptidases, zinc-binding region:CBS domain (NCBI)

Details for MMP0453 - Neutral zinc metallopeptidases, zinc-binding region:CBS domain (NCBI)

GO Terms: GO:0006508, GO:0004222, GO:0008270

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0453

Tuberculist Genomic Region

MMP0458 possible A. fulgidus predicted coding region AF1474 (NCBI)

Details for MMP0458 - possible A. fulgidus predicted coding region AF1474 (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0458

Tuberculist Genomic Region

MMP1220 glycogen phosphorylase (NCBI)

Details for MMP1220 - glycogen phosphorylase (NCBI)

GO Terms: GO:0005975, GO:0008184, GO:0030170

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1220

Tuberculist Genomic Region

MMP0595 conserved hypothetical protein (NCBI)

Details for MMP0595 - conserved hypothetical protein (NCBI)

GO Terms: GO:0003824, GO:0030170

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0595

Tuberculist Genomic Region

MMP1295 glucose-6-phosphate isomerase (NCBI)

Details for MMP1295 - glucose-6-phosphate isomerase (NCBI)

GO Terms: GO:0006094, GO:0006096, GO:0004347

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1295

Tuberculist Genomic Region

MMP0635 ABC transporter:ATPase subunit (NCBI)

Details for MMP0635 - ABC transporter:ATPase subunit (NCBI)

GO Terms: GO:0003924, GO:0005524, GO:0005525, GO:0016887

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0635

Tuberculist Genomic Region

Displaying 1 - 25 of 25

Motifs

Motif 1: e-value: 0.97 e-value: 7100

Module Plots

Regulation

Regulator Interaction Influence Weight Other Influences

MMP0402

Conserved hypothetical Archael protein (NCBI)

MMP1015

Transcription factor CBF/NF-Y/archaeal histone:Histone-fold/TFIID-TAF/NF-Y domain (NCBI)
 up-regulates 0.24

MMP0402

MMP1015

MMP0018

Transcriptional regulator, LysR Family Member (NCBI)

MMP0402

Conserved hypothetical Archael protein (NCBI)
 up-regulates 0.14

MMP0018

MMP0402

MMP1023

Transcriptional regulator, TetR Family Member (NCBI)
 down-regulates -0.14

MMP1023

MMP0209

Conserved hypothetical protein (NCBI)
 up-regulates 0.14

MMP0209

GO Enrichment

Category: MF
Category GO ID GO Term Annotated Expected Significant p-value
MF GO:0030170 pyridoxal phosphate binding 3 0.03 1 0.0310
MF GO:0048037 cofactor binding 32 0.33 2 0.0400
MF GO:0004175 endopeptidase activity 4 0.04 1 0.0410

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