Methanococcus maripaludis S2 Module 86 Residual: 0.27

×

Error message

  • Unable to create CTools CSS cache directory. Check the permissions on your files directory.
  • Unable to create CTools CSS cache directory. Check the permissions on your files directory.

Summary

Residual: 0.27 Score: -19.153 version: mmp_cmonkey_11_Oct_11

Members

MMP0100 Na+/H+ exchanger family (NCBI)

Details for MMP0100 - Na+/H+ exchanger family (NCBI)

GO Terms: GO:0006885, GO:0016021, GO:0015299

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0100

Tuberculist Genomic Region

MMP0590 Glycosyl transferase, family 2 (NCBI)

Details for MMP0590 - Glycosyl transferase, family 2 (NCBI)

GO Terms: GO:0004582

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0590

Tuberculist Genomic Region

MMP0340 pyruvate carboxylase subunit B (NCBI)

Details for MMP0340 - pyruvate carboxylase subunit B (NCBI)

GO Terms: GO:0006814, GO:0008152, GO:0004736, GO:0008948

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0340

Tuberculist Genomic Region

MMP0713 indolepyruvate oxidoreductase subunit alpha 2 (NCBI)

Details for MMP0713 - indolepyruvate oxidoreductase subunit alpha 2 (NCBI)

GO Terms: GO:0006118, GO:0051536, GO:0009055, GO:0030976, GO:0043805

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0713

Tuberculist Genomic Region

MMP0341 pyruvate carboxylase subunit A (NCBI)

Details for MMP0341 - pyruvate carboxylase subunit A (NCBI)

GO Terms: GO:0008152, GO:0009343, GO:0003989, GO:0004075, GO:0009374, GO:0005524

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0341

Tuberculist Genomic Region

MMP0714 indolepyruvate oxidoreductase subunit beta 2 (NCBI)

Details for MMP0714 - indolepyruvate oxidoreductase subunit beta 2 (NCBI)

GO Terms: GO:0006118, GO:0005524, GO:0043805

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0714

Tuberculist Genomic Region

MMP0910 hypothetical protein (NCBI)

Details for MMP0910 - hypothetical protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0910

Tuberculist Genomic Region

MMP0715 coenzyme F390 synthetase II (NCBI)

Details for MMP0715 - coenzyme F390 synthetase II (NCBI)

GO Terms: GO:0008152, GO:0047475

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0715

Tuberculist Genomic Region

MMP0919 2Fe-2S Ferredoxin:Oxidoreductase FAD/NAD(P)-binding:NADH:cytochrome b5 reductase (CBR) (NCBI)

Details for MMP0919 - 2Fe-2S Ferredoxin:Oxidoreductase FAD/NAD(P)-binding:NADH:cytochrome b5 reductase (CBR) (NCBI)

GO Terms: GO:0006118, GO:0006221, GO:0009055, GO:0051537, GO:0050660

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0919

Tuberculist Genomic Region

MMP0814 hypothetical protein (NCBI)

Details for MMP0814 - hypothetical protein (NCBI)

GO Terms: GO:0005618

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0814

Tuberculist Genomic Region

MMP1222 DNA repair and recombination protein radA (NCBI)

Details for MMP1222 - DNA repair and recombination protein radA (NCBI)

GO Terms: GO:0006310, GO:0006281, GO:0005622, GO:0005524, GO:0043565, GO:0003684, GO:0008094, GO:0005515

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1222

Tuberculist Genomic Region

MMP0815 conserved hypothetical protein (NCBI)

Details for MMP0815 - conserved hypothetical protein (NCBI)

GO Terms: GO:0006825, GO:0042597, GO:0005507

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0815

Tuberculist Genomic Region

MMP0160 coenzyme F390 synthetase (NCBI)

Details for MMP0160 - coenzyme F390 synthetase (NCBI)

GO Terms: GO:0008152, GO:0047475

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0160

Tuberculist Genomic Region

MMP1128 Peptidyl-prolyl cis-trans isomerase, cyclophilin type (NCBI)

Details for MMP1128 - Peptidyl-prolyl cis-trans isomerase, cyclophilin type (NCBI)

GO Terms: GO:0006457, GO:0030051, GO:0042027, GO:0003755, GO:0004600

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1128

Tuberculist Genomic Region

MMP0285 Phosphoesterase, RecJ-like:TrkA-N:Phosphoesterase, DHHA1 (NCBI)

Details for MMP0285 - Phosphoesterase, RecJ-like:TrkA-N:Phosphoesterase, DHHA1 (NCBI)

GO Terms: GO:0006813, GO:0003676, GO:0016787, GO:0030145

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0285

Tuberculist Genomic Region

MMP1196 conserved hypothetical protein (NCBI)

Details for MMP1196 - conserved hypothetical protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1196

Tuberculist Genomic Region

MMP0287 Conserved Hypothetical protein with 2 CBS domains. (NCBI)

Details for MMP0287 - Conserved Hypothetical protein with 2 CBS domains. (NCBI)

GO Terms: GO:0008152, GO:0003677, GO:0003938

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0287

Tuberculist Genomic Region

Displaying 1 - 17 of 17

Motifs

Motif 1: e-value: 0.23 e-value: 700

Module Plots

Regulation

Regulator Interaction Influence Weight Other Influences

MMP0568

transcriptional regulator related protein (NCBI)
 up-regulates 0.40

MMP0568

MMP0907

predicted archaeal transcriptional regulator (NCBI)

MMP1646

conserved hypothetical archaeal protein (NCBI)
 up-regulates 0.33

MMP0907

MMP1646

MMP1499

conserved hypothetical archaeal protein (NCBI)

MMP1646

conserved hypothetical archaeal protein (NCBI)
 up-regulates 0.13

MMP1499

MMP1646

MMP1065

conserved hypothetical archaeal protein (NCBI)
 down-regulates -0.11

MMP1065

GO Enrichment

Category: BP
Category GO ID GO Term Annotated Expected Significant p-value
BP GO:0006805 xenobiotic metabolic process 3 0.05 2 0.0005
BP GO:0009410 response to xenobiotic stimulus 3 0.05 2 0.0005
BP GO:0010124 phenylacetate catabolic process 3 0.05 2 0.0005
BP GO:0042178 xenobiotic catabolic process 3 0.05 2 0.0005
BP GO:0042537 benzene-containing compound metabolic pr... 3 0.05 2 0.0005
BP GO:0070887 cellular response to chemical stimulus 3 0.05 2 0.0005
BP GO:0071466 cellular response to xenobiotic stimulus 3 0.05 2 0.0005
BP GO:0072329 monocarboxylic acid catabolic process 3 0.05 2 0.0005
BP GO:0016054 organic acid catabolic process 6 0.09 2 0.0024
BP GO:0019439 aromatic compound catabolic process 6 0.09 2 0.0024
BP GO:0044282 small molecule catabolic process 6 0.09 2 0.0024
BP GO:0046395 carboxylic acid catabolic process 6 0.09 2 0.0024
BP GO:1901361 organic cyclic compound catabolic proces... 6 0.09 2 0.0024
BP GO:0051716 cellular response to stimulus 7 0.11 2 0.0034
BP GO:0042221 response to chemical 8 0.12 2 0.0045
BP GO:0032787 monocarboxylic acid metabolic process 9 0.14 2 0.0058
BP GO:0044248 cellular catabolic process 9 0.14 2 0.0058
BP GO:0044712 single-organism catabolic process 10 0.16 2 0.0072
BP GO:0009056 catabolic process 13 0.20 2 0.0123
BP GO:0050896 response to stimulus 13 0.20 2 0.0123
BP GO:1901575 organic substance catabolic process 13 0.20 2 0.0123
Category: MF
Category GO ID GO Term Annotated Expected Significant p-value
MF GO:0003755 peptidyl-prolyl cis-trans isomerase acti... 4 0.05 1 0.0460
MF GO:0016757 transferase activity, transferring glyco... 4 0.05 1 0.0460
MF GO:0016859 cis-trans isomerase activity 4 0.05 1 0.0460

Comments

Log in to post comments