Methanococcus maripaludis S2 Module 91 Residual: 0.08 | Syntrophy Portal

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Summary

Residual: 0.08 Score: -26.229 version: mmp_cmonkey_11_Oct_11

Members

MMP0156 Ribosomal protein S19E (S16A) (NCBI) Details for MMP0156 - Ribosomal protein S19E (S16A) (NCBI) GO Terms: GO:0006412, GO:0005840, GO:0003735 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: MMP0156 Tuberculist Genomic Region	MMP1366 KH domain:KH domain, type 1 (NCBI) Details for MMP1366 - KH domain:KH domain, type 1 (NCBI) GO Terms: GO:0003723 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: MMP1366 Tuberculist Genomic Region
MMP0157 conserved hypothetical protein (NCBI) Details for MMP0157 - conserved hypothetical protein (NCBI) GO Terms: GO:0003677 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: MMP0157 Tuberculist Genomic Region	MMP1367 SSU ribosomal protein S12 (NCBI) Details for MMP1367 - SSU ribosomal protein S12 (NCBI) GO Terms: GO:0006412, GO:0015935, GO:0003735 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: MMP1367 Tuberculist Genomic Region
MMP0158 conserved hypothetical protein (NCBI) Details for MMP0158 - conserved hypothetical protein (NCBI) GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: MMP0158 Tuberculist Genomic Region	MMP1368 SSU ribosomal protein S7P (NCBI) Details for MMP1368 - SSU ribosomal protein S7P (NCBI) GO Terms: GO:0006412, GO:0015935, GO:0003735 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: MMP1368 Tuberculist Genomic Region
MMP1365 Ribosomal protein L30E (NCBI) Details for MMP1365 - Ribosomal protein L30E (NCBI) GO Terms: GO:0006412, GO:0005840, GO:0003735 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: MMP1365 Tuberculist Genomic Region	MMP1369 translation elongation factor EF-2 (NCBI) Details for MMP1369 - translation elongation factor EF-2 (NCBI) GO Terms: GO:0006414, GO:0005737, GO:0008547, GO:0003924, GO:0003746, GO:0005525 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: MMP1369 Tuberculist Genomic Region

Motifs

Motif 1:

Motif 2:

Module Median Expression Profiles

Module Plots

Regulation

Regulator	Interaction	Influence Weight	Other Influences
MMP0499 conserved hypothetical protein (NCBI) MMP1376 conserved hypothetical protein (NCBI)	down-regulates	-0.26	MMP0499 MMP1376
MMP0568 transcriptional regulator related protein (NCBI)	up-regulates	0.21	MMP0568
MMP0052 Conserved Hypothetical protein with 2 CBS domains (NCBI)	down-regulates	-0.19	MMP0052
MMP0460 Conserved Hypothetical Protein (NCBI)	down-regulates	-0.19	MMP0460
MMP0257 TATA-binding protein (TBP) (NCBI) MMP1376 conserved hypothetical protein (NCBI)	down-regulates	-0.18	MMP0257 MMP1376
MMP0032 ArsR family member (NCBI)	down-regulates	-0.16	MMP0032

GO Enrichment

Category: CC
Category	GO ID	GO Term	Annotated	Expected	Significant	p-value
CC	GO:0005840	ribosome	32	0.35	2	0.0300
CC	GO:0043226	organelle	32	0.35	2	0.0300
CC	GO:0043228	non-membrane-bounded organelle	32	0.35	2	0.0300
CC	GO:0043229	intracellular organelle	32	0.35	2	0.0300
CC	GO:0043232	intracellular non-membrane-bounded organ...	32	0.35	2	0.0300
CC	GO:0044444	cytoplasmic part	34	0.38	2	0.0340
CC	GO:0030529	ribonucleoprotein complex	36	0.40	2	0.0390

Category: MF
Category	GO ID	GO Term	Annotated	Expected	Significant	p-value
MF	GO:0003676	nucleic acid binding	122	0.79	4	0.0026
MF	GO:0003723	RNA binding	57	0.37	3	0.0034
MF	GO:0019843	rRNA binding	26	0.17	2	0.0102
MF	GO:0097159	organic cyclic compound binding	329	2.13	5	0.0137
MF	GO:1901363	heterocyclic compound binding	329	2.13	5	0.0137

Essentiality

Comments

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