Methanococcus maripaludis S2 Module 97 Residual: 0.10

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Summary

Residual: 0.10 Score: -39.9278 version: mmp_cmonkey_11_Oct_11

Members

MMP1400 M. jannaschii predicted coding region MJ0458.1 (NCBI)

Details for MMP1400 - M. jannaschii predicted coding region MJ0458.1 (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1400

Tuberculist Genomic Region

MMP1402 hypothetical protein (NCBI)

Details for MMP1402 - hypothetical protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1402

Tuberculist Genomic Region

MMP1401 translation elongation factor aEF-1 beta (NCBI)

Details for MMP1401 - translation elongation factor aEF-1 beta (NCBI)

GO Terms: GO:0006414, GO:0005853, GO:0003746, GO:0008547, GO:0003924

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1401

Tuberculist Genomic Region

MMP1403 LSU ribosomal protein L22P (NCBI)

Details for MMP1403 - LSU ribosomal protein L22P (NCBI)

GO Terms: GO:0006412, GO:0015934, GO:0003735

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1403

Tuberculist Genomic Region

MMP1433 Ribosomal protein L11 (NCBI)

Details for MMP1433 - Ribosomal protein L11 (NCBI)

GO Terms: GO:0006412, GO:0005840, GO:0003735

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1433

Tuberculist Genomic Region

MMP1404 SSU ribosomal protein S3P (NCBI)

Details for MMP1404 - SSU ribosomal protein S3P (NCBI)

GO Terms: GO:0006412, GO:0015935, GO:0003723, GO:0003735

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1404

Tuberculist Genomic Region

MMP0443 SSU ribosomal protein S24E (NCBI)

Details for MMP0443 - SSU ribosomal protein S24E (NCBI)

GO Terms: GO:0006412, GO:0005840, GO:0000166, GO:0003735

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0443

Tuberculist Genomic Region

MMP1405 LSU ribosomal protein L29P (NCBI)

Details for MMP1405 - LSU ribosomal protein L29P (NCBI)

GO Terms: GO:0006412, GO:0005840, GO:0003735

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1405

Tuberculist Genomic Region

MMP0444 SSU ribosomal protein S27AE (NCBI)

Details for MMP0444 - SSU ribosomal protein S27AE (NCBI)

GO Terms: GO:0006412, GO:0005840, GO:0003735, GO:0016787

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0444

Tuberculist Genomic Region

Displaying 1 - 9 of 9

Motifs

Motif 1: e-value: 240 e-value: 1100

Module Plots

Regulation

Regulator Interaction Influence Weight Other Influences

MMP0052

Conserved Hypothetical protein with 2 CBS domains (NCBI)

MMP0257

TATA-binding protein (TBP) (NCBI)
 down-regulates -0.55

MMP0052

MMP0257

MMP0052

Conserved Hypothetical protein with 2 CBS domains (NCBI)

MMP0097

Transcriptional regulator protein, Helix-turn-helix motif (NCBI)
 down-regulates -0.40

MMP0052

MMP0097

GO Enrichment

Category: CC
Category GO ID GO Term Annotated Expected Significant p-value
CC GO:0044444 cytoplasmic part 34 0.75 4 0.0011
CC GO:0032991 macromolecular complex 41 0.91 4 0.0023
CC GO:0005737 cytoplasm 67 1.48 4 0.0177
CC GO:0005840 ribosome 32 0.71 3 0.0179
CC GO:0043226 organelle 32 0.71 3 0.0179
CC GO:0043228 non-membrane-bounded organelle 32 0.71 3 0.0179
CC GO:0043229 intracellular organelle 32 0.71 3 0.0179
CC GO:0043232 intracellular non-membrane-bounded organ... 32 0.71 3 0.0179
CC GO:0044424 intracellular part 71 1.57 4 0.0225
CC GO:0030529 ribonucleoprotein complex 36 0.80 3 0.0253
CC GO:0005622 intracellular 76 1.68 4 0.0297
CC GO:0005623 cell 85 1.88 4 0.0468
CC GO:0044464 cell part 85 1.88 4 0.0468
Category: MF
Category GO ID GO Term Annotated Expected Significant p-value
MF GO:0019843 rRNA binding 26 0.10 2 0.0032
MF GO:0003723 RNA binding 57 0.22 2 0.0153
MF GO:0070180 large ribosomal subunit rRNA binding 6 0.02 1 0.0231

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