Methanococcus maripaludis S2 Module 105 Residual: 0.15

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Summary

Residual: 0.15 Score: -27.1406 version: mmp_cmonkey_11_Oct_11

Members

MMP1207 Ribosomal protein S6e (NCBI)

Details for MMP1207 - Ribosomal protein S6e (NCBI)

GO Terms: GO:0006412, GO:0005840, GO:0003735

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1207

Tuberculist Genomic Region

MMP1321 SSU ribosomal protein S11 (NCBI)

Details for MMP1321 - SSU ribosomal protein S11 (NCBI)

GO Terms: GO:0006412, GO:0005840, GO:0003735

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1321

Tuberculist Genomic Region

MMP0159 LSU ribosomal protein L39E (NCBI)

Details for MMP0159 - LSU ribosomal protein L39E (NCBI)

GO Terms: GO:0006412, GO:0005840, GO:0003735

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0159

Tuberculist Genomic Region

MMP1400 M. jannaschii predicted coding region MJ0458.1 (NCBI)

Details for MMP1400 - M. jannaschii predicted coding region MJ0458.1 (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1400

Tuberculist Genomic Region

MMP0625 KOW motif (NCBI)

Details for MMP0625 - KOW motif (NCBI)

GO Terms: GO:0006412, GO:0005840, GO:0003735

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0625

Tuberculist Genomic Region

MMP1401 translation elongation factor aEF-1 beta (NCBI)

Details for MMP1401 - translation elongation factor aEF-1 beta (NCBI)

GO Terms: GO:0006414, GO:0005853, GO:0003746, GO:0008547, GO:0003924

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1401

Tuberculist Genomic Region

MMP0667 SSU Ribosomal protein S2 (NCBI)

Details for MMP0667 - SSU Ribosomal protein S2 (NCBI)

GO Terms: GO:0006412, GO:0015935, GO:0003735

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0667

Tuberculist Genomic Region

MMP1433 Ribosomal protein L11 (NCBI)

Details for MMP1433 - Ribosomal protein L11 (NCBI)

GO Terms: GO:0006412, GO:0005840, GO:0003735

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1433

Tuberculist Genomic Region

MMP0668 conserved hypothetical protein (NCBI)

Details for MMP0668 - conserved hypothetical protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0668

Tuberculist Genomic Region

MMP1402 hypothetical protein (NCBI)

Details for MMP1402 - hypothetical protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1402

Tuberculist Genomic Region

MMP0669 SSU ribosomal protein S3AE (NCBI)

Details for MMP0669 - SSU ribosomal protein S3AE (NCBI)

GO Terms: GO:0006412, GO:0005840, GO:0003735

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0669

Tuberculist Genomic Region

MMP1404 SSU ribosomal protein S3P (NCBI)

Details for MMP1404 - SSU ribosomal protein S3P (NCBI)

GO Terms: GO:0006412, GO:0015935, GO:0003723, GO:0003735

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1404

Tuberculist Genomic Region

MMP1289 Ribosomal protein L10E (NCBI)

Details for MMP1289 - Ribosomal protein L10E (NCBI)

GO Terms: GO:0006412, GO:0005840, GO:0003735

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1289

Tuberculist Genomic Region

MMP1403 LSU ribosomal protein L22P (NCBI)

Details for MMP1403 - LSU ribosomal protein L22P (NCBI)

GO Terms: GO:0006412, GO:0015934, GO:0003735

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1403

Tuberculist Genomic Region

Displaying 1 - 14 of 14

Motifs

Motif 1: e-value: 65 e-value: 220

Module Plots

Regulation

Regulator Interaction Influence Weight Other Influences

MMP0568

transcriptional regulator related protein (NCBI)
 up-regulates 0.48

MMP0568

MMP0052

Conserved Hypothetical protein with 2 CBS domains (NCBI)

MMP0097

Transcriptional regulator protein, Helix-turn-helix motif (NCBI)
 down-regulates -0.44

MMP0052

MMP0097

MMP1646

conserved hypothetical archaeal protein (NCBI)
 up-regulates 0.33

MMP1646

MMP0460

Conserved Hypothetical Protein (NCBI)
 up-regulates 0.28

MMP0460

MMP0052

Conserved Hypothetical protein with 2 CBS domains (NCBI)

MMP0257

TATA-binding protein (TBP) (NCBI)
 down-regulates -0.28

MMP0052

MMP0257

MMP0033

LysR family member (NCBI)
 up-regulates 0.25

MMP0033

MMP0097

Transcriptional regulator protein, Helix-turn-helix motif (NCBI)

MMP0631

putatuve iron dependent repressor (NCBI)
 down-regulates -0.23

MMP0097

MMP0631

MMP0097

Transcriptional regulator protein, Helix-turn-helix motif (NCBI)

MMP1052

conserved hypothetical archaeal protein (NCBI)
 up-regulates 0.13

MMP0097

MMP1052

GO Enrichment

Category: CC
Category GO ID GO Term Annotated Expected Significant p-value
CC GO:0005737 cytoplasm 67 2.96 8 0.0003
CC GO:0044424 intracellular part 71 3.14 8 0.0004
CC GO:0005622 intracellular 76 3.36 8 0.0008
CC GO:0005623 cell 85 3.76 8 0.0020
CC GO:0044464 cell part 85 3.76 8 0.0020
Category: MF
Category GO ID GO Term Annotated Expected Significant p-value
MF GO:0003723 RNA binding 57 0.22 3 0.0004
MF GO:0003676 nucleic acid binding 122 0.47 3 0.0039
MF GO:0070180 large ribosomal subunit rRNA binding 6 0.02 1 0.0231

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