Methanococcus maripaludis S2 Module 154 Residual: 0.30 | Syntrophy Portal

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Summary

Residual: 0.30 Score: -14.5638 version: mmp_cmonkey_11_Oct_11

Members

MMP0299 hypothetical protein (NCBI) Details for MMP0299 - hypothetical protein (NCBI) GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: MMP0299 Tuberculist Genomic Region	MMP0753 conserved hypothetical protein (NCBI) Details for MMP0753 - conserved hypothetical protein (NCBI) GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: MMP0753 Tuberculist Genomic Region
MMP0303 rubredoxin (NCBI) Details for MMP0303 - rubredoxin (NCBI) GO Terms: GO:0006118, GO:0046872, GO:0009055 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: MMP0303 Tuberculist Genomic Region	MMP0754 hypothetical protein (NCBI) Details for MMP0754 - hypothetical protein (NCBI) GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: MMP0754 Tuberculist Genomic Region
MMP0332 conserved hypothetical protein (NCBI) Details for MMP0332 - conserved hypothetical protein (NCBI) GO Terms: GO:0006259, GO:0005694, GO:0005524 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: MMP0332 Tuberculist Genomic Region	MMP0798 hypothetical protein (NCBI) Details for MMP0798 - hypothetical protein (NCBI) GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: MMP0798 Tuberculist Genomic Region
MMP0416 conserved hypothetical protein (NCBI) Details for MMP0416 - conserved hypothetical protein (NCBI) GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: MMP0416 Tuberculist Genomic Region	MMP0826 hypothetical protein (NCBI) Details for MMP0826 - hypothetical protein (NCBI) GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: MMP0826 Tuberculist Genomic Region
MMP0445 hypothetical protein (NCBI) Details for MMP0445 - hypothetical protein (NCBI) GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: MMP0445 Tuberculist Genomic Region	MMP0827 hypothetical protein (NCBI) Details for MMP0827 - hypothetical protein (NCBI) GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: MMP0827 Tuberculist Genomic Region
MMP0532 conserved hypothetical protein (NCBI) Details for MMP0532 - conserved hypothetical protein (NCBI) GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: MMP0532 Tuberculist Genomic Region	MMP0846 hypothetical protein (NCBI) Details for MMP0846 - hypothetical protein (NCBI) GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: MMP0846 Tuberculist Genomic Region
MMP0601 hypothetical protein (NCBI) Details for MMP0601 - hypothetical protein (NCBI) GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: MMP0601 Tuberculist Genomic Region	MMP0944 hypothetical protein (NCBI) Details for MMP0944 - hypothetical protein (NCBI) GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: MMP0944 Tuberculist Genomic Region
MMP0712 similar to amino acid ABC transporter substrate-binding protein (NCBI) Details for MMP0712 - similar to amino acid ABC transporter substrate-binding protein (NCBI) GO Terms: GO:0006810, GO:0030288, GO:0005215 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: MMP0712 Tuberculist Genomic Region	MMP0972 hypothetical protein (NCBI) Details for MMP0972 - hypothetical protein (NCBI) GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: MMP0972 Tuberculist Genomic Region
MMP0724 hypothetical protein (NCBI) Details for MMP0724 - hypothetical protein (NCBI) GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: MMP0724 Tuberculist Genomic Region	MMP1276 hypothetical protein (NCBI) Details for MMP1276 - hypothetical protein (NCBI) GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: MMP1276 Tuberculist Genomic Region
MMP0726 hypothetical (NCBI) Details for MMP0726 - hypothetical (NCBI) GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: MMP0726 Tuberculist Genomic Region	MMP1632 Solute-binding protein/glutamate receptor:Bacterial extracellular solute-binding protein, family 3 (NCBI) Details for MMP1632 - Solute-binding protein/glutamate receptor:Bacterial extracellular solute-binding protein, family 3 (NCBI) GO Terms: GO:0006810, GO:0030288, GO:0005215 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: MMP1632 Tuberculist Genomic Region
MMP0734 hypothetical protein (NCBI) Details for MMP0734 - hypothetical protein (NCBI) GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: MMP0734 Tuberculist Genomic Region

Motifs

Motif 1:

e-value: 0.00000000000072 Motif 2:

e-value: 5200

Module Median Expression Profiles

Module Plots

Regulation

Regulator	Interaction	Influence Weight	Other Influences
MMP1304 Response regulator receiver (NCBI)	up-regulates	0.30	MMP1304
MMP0257 TATA-binding protein (TBP) (NCBI) MMP1304 Response regulator receiver (NCBI)	up-regulates	0.28	MMP0257 MMP1304
MMP1015 Transcription factor CBF/NF-Y/archaeal histone:Histone-fold/TFIID-TAF/NF-Y domain (NCBI)	up-regulates	0.18	MMP1015
MMP0257 TATA-binding protein (TBP) (NCBI) MMP1447 Cro repressor family Helix-turn-helix motif containing protein (NCBI)	up-regulates	0.16	MMP0257 MMP1447
MMP0033 LysR family member (NCBI)	down-regulates	-0.15	MMP0033
MMP1303 Sensory transduction histidine kinase (NCBI)	up-regulates	0.11	MMP1303

GO Enrichment

Category: MF
Category	GO ID	GO Term	Annotated	Expected	Significant	p-value
MF	GO:0005215	transporter activity	32	0.12	2	0.0049
MF	GO:0005506	iron ion binding	4	0.02	1	0.0155
MF	GO:0046914	transition metal ion binding	9	0.03	1	0.0346

Essentiality

Comments

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