DVU1788 DVU1788 RNA polymerase sigma factor RpoD

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Desulfovibrio vulgaris Hildenborough

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Summary

Locus Tag Symbol Synonyms Product Protein Synonyms Start End Strand PubMed ID
DVU1788 DVU1788 rpoD rpoD, DVU1788 RNA polymerase sigma factor RpoD RNA polymerase sigma factor RpoD (Sigma-70) 1852774 1851002 - 15077118

Regulatory Modules

Residual Expression Plot
bicluster_0227 0.46

XReference

Uniprot NCBI Gene NCBI Protein GI Number MicrobesOnline EnsemblBacteria InterPro EggNOG OrthoDB
Q72B50 2793314 YP_011006.1; 46580198 207253 AAS96265 IPR014284, IPR000943, IPR009042, IPR007627, IPR007624, IPR007630, IPR007127, IPR013325, IPR013324, IPR012760, IPR028630, IPR011991 COG0568 EOG6XHC70

Mutations

Line Position Effect Impact Class Percent Frequency Sample Title
UR1 1 851 531 NON_SYNONYMOUS_CODING MISSENSE 86 TG_UR1 Chr-DVU1788-1851531-TG_UR1
UR1 1 851 531 NON_SYNONYMOUS_CODING MISSENSE 78 EG_UR1_118 Chr-DVU1788-1851531-EG_UR1_118
UE3 1 851 183 FRAME_SHIFT NONE 75 DvH_03_17-36163128 Chr-DVU1788-1851183-DvH_03_17-36163128
UE3 1 851 183 FRAME_SHIFT NONE 73 DvH_03_84-36160136 Chr-DVU1788-1851183-DvH_03_84-36160136

Transposon mutants

Title Insert TAG Module
DVU1788

Homology

Orthologues Paralogues

Functions

COG Protein families
(K) COG568 | DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) Sigma-70 factor family, RpoD/SigA subfamily

Essentiality

WT.MOLS4 WT.MOLS4_NO3 WT.MOYLS4.1 WT.MOYLS4.2
0.05 0 0.01 0

Product Synonyms

Product (LegacyBRC) Product (RefSeq)

Operon

Refseq

GI Number Accession Blast Conserved Domains
46580198 YP_011006.1 Run

GO Terms

String Network

Link to STRINGS STRINGS Network
DVU1788

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