Desulfovibrio vulgaris Hildenborough Module 16 Residual: 0.48 | Syntrophy Portal

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Summary

Residual: 0.48 Score: -36.8154 version: dvh_cmonkey_11_Mar_02

Members

DVU0407 Rare lipoprotein A family protein Details for DVU0407 - Rare lipoprotein A family protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0407 Tuberculist Genomic Region	DVU1656 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase Details for DVU1656 - 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase GO Terms: GO:0003848, GO:0009396, GO:0016301 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1656 Tuberculist Genomic Region
DVU0941 Peptidase, M16 family Details for DVU0941 - Peptidase, M16 family GO Terms: GO:0003824, GO:0046872, GO:0006508 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0941 Tuberculist Genomic Region	DVU1850 CBS domain protein Details for DVU1850 - CBS domain protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1850 Tuberculist Genomic Region
DVU1005 Uncharacterized protein Details for DVU1005 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1005 Tuberculist Genomic Region	DVU1861 Peptide chain release factor 2 Details for DVU1861 - Peptide chain release factor 2 GO Terms: GO:0005737, GO:0016149 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1861 Tuberculist Genomic Region
DVU1244 Uncharacterized protein Details for DVU1244 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1244 Tuberculist Genomic Region	DVU1867 Diaminopimelate epimerase Details for DVU1867 - Diaminopimelate epimerase GO Terms: GO:0005737, GO:0008837, GO:0009089 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1867 Tuberculist Genomic Region
DVU1335 ATP-dependent Clp protease proteolytic subunit Details for DVU1335 - ATP-dependent Clp protease proteolytic subunit GO Terms: GO:0005737, GO:0004252 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1335 Tuberculist Genomic Region	DVU2201 Alcohol dehydrogenase, iron-containing Details for DVU2201 - Alcohol dehydrogenase, iron-containing GO Terms: GO:0046872, GO:0016491 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2201 Tuberculist Genomic Region
DVU1572 Transcriptional regulator, CarD family Details for DVU1572 - Transcriptional regulator, CarD family GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1572 Tuberculist Genomic Region	DVU2609 Chemotaxis MotB protein, putative Details for DVU2609 - Chemotaxis MotB protein, putative GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2609 Tuberculist Genomic Region
DVU1582 Uncharacterized protein Details for DVU1582 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1582 Tuberculist Genomic Region	DVU2650 Uncharacterized protein Details for DVU2650 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2650 Tuberculist Genomic Region
DVU1612 ACT domain protein Details for DVU1612 - ACT domain protein GO Terms: GO:0016597, GO:0008152 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1612 Tuberculist Genomic Region	DVU2655 D-alanyl-D-alanine carboxypeptidase family protein Details for DVU2655 - D-alanyl-D-alanine carboxypeptidase family protein GO Terms: GO:0009002 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2655 Tuberculist Genomic Region
DVU1647 Diaminopimelate decarboxylase Details for DVU1647 - Diaminopimelate decarboxylase GO Terms: GO:0008836, GO:0009089, GO:0030170 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1647 Tuberculist Genomic Region	DVUA0071 Glycosyl transferase, group 1/2 family protein Details for DVUA0071 - Glycosyl transferase, group 1/2 family protein GO Terms: GO:0009058, GO:0016740 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVUA0071 Tuberculist Genomic Region
DVU1648 Lipoprotein, putative Details for DVU1648 - Lipoprotein, putative GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1648 Tuberculist Genomic Region	DVU0916 Redox-sensing transcriptional repressor Rex Details for DVU0916 - Redox-sensing transcriptional repressor Rex GO Terms: GO:0003677, GO:0050662, GO:0005737, GO:0045892, GO:0051775, GO:0003700, GO:0006351 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0916 Tuberculist Genomic Region
DVU1649 DNA mismatch repair protein MutS Details for DVU1649 - DNA mismatch repair protein MutS GO Terms: GO:0005524, GO:0003684, GO:0006298, GO:0030983 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1649 Tuberculist Genomic Region	DVU1851 Peptidase, M23/M37 family Details for DVU1851 - Peptidase, M23/M37 family GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1851 Tuberculist Genomic Region
DVU1655 LL-diaminopimelate aminotransferase Details for DVU1655 - LL-diaminopimelate aminotransferase GO Terms: GO:0010285, GO:0033362, GO:0030170 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1655 Tuberculist Genomic Region

Motifs

Motif 1:

e-value: 0.46 Motif 2:

e-value: 120

Module Median Expression Profiles

Module Plots

Regulation

Regulator	Interaction	Influence Weight	Other Influences
DVU1517 Transcriptional regulator cII, putative	down-regulates	-0.15	DVU1517
DVU1754 Uncharacterized protein	down-regulates	-0.29	DVU1754
DVU2532 Transcriptional regulator, MerR family	up-regulates	0.31	DVU2532

GO Enrichment

Category: CC
Category	GO ID	GO Term	Annotated	Expected	Significant	p-value
CC	GO:0005737	cytoplasm	86	0.66	3	0.0100
CC	GO:0005622	intracellular	104	0.79	3	0.0180
CC	GO:0044424	intracellular part	104	0.79	3	0.0180

Category: MF
Category	GO ID	GO Term	Annotated	Expected	Significant	p-value
MF	GO:0008238	exopeptidase activity	4	0.03	1	0.0280
MF	GO:0016597	amino acid binding	4	0.03	1	0.0280
MF	GO:0008236	serine-type peptidase activity	5	0.04	1	0.0350
MF	GO:0017171	serine hydrolase activity	5	0.04	1	0.0350
MF	GO:0016831	carboxy-lyase activity	6	0.04	1	0.0420
MF	GO:0031406	carboxylic acid binding	6	0.04	1	0.0420
MF	GO:0043177	organic acid binding	6	0.04	1	0.0420
MF	GO:0008483	transaminase activity	7	0.05	1	0.0480
MF	GO:0016769	transferase activity, transferring nitro...	7	0.05	1	0.0480

Essentiality

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