Desulfovibrio vulgaris Hildenborough Module 19 Residual: 0.44

×

Error message

  • Unable to create CTools CSS cache directory. Check the permissions on your files directory.
  • Unable to create CTools CSS cache directory. Check the permissions on your files directory.

Summary

Residual: 0.44 Score: -45.2059 version: dvh_cmonkey_11_Mar_02

Members

DVU0367 Ser/Thr protein phosphatase family protein

Details for DVU0367 - Ser/Thr protein phosphatase family protein

GO Terms: GO:0016787

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0367

Tuberculist Genomic Region

DVU2828 Site-specific recombinase, phage integrase family

Details for DVU2828 - Site-specific recombinase, phage integrase family

GO Terms: GO:0003677, GO:0015074, GO:0006310

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2828

Tuberculist Genomic Region

DVU0444 CBS domain protein

Details for DVU0444 - CBS domain protein

GO Terms: GO:0008773

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0444

Tuberculist Genomic Region

DVU3152 Histidine kinase

Details for DVU3152 - Histidine kinase

GO Terms: GO:0005524, GO:0016020, GO:0000155

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3152

Tuberculist Genomic Region

DVU0486 Uncharacterized protein

Details for DVU0486 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0486

Tuberculist Genomic Region

DVU3169 Cobalamin biosynthesis protein CbiG

Details for DVU3169 - Cobalamin biosynthesis protein CbiG

GO Terms: GO:0009236

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3169

Tuberculist Genomic Region

DVU0609 Lipoprotein, putative

Details for DVU0609 - Lipoprotein, putative

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0609

Tuberculist Genomic Region

DVU3354 Uncharacterized protein

Details for DVU3354 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3354

Tuberculist Genomic Region

DVU0892 Shikimate kinase

Details for DVU0892 - Shikimate kinase

GO Terms: GO:0005524, GO:0009073, GO:0009423, GO:0005737, GO:0000287, GO:0004765

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0892

Tuberculist Genomic Region

DVU0447 Membrane protein, putative

Details for DVU0447 - Membrane protein, putative

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0447

Tuberculist Genomic Region

DVU1884 Methyl-accepting chemotaxis protein

Details for DVU1884 - Methyl-accepting chemotaxis protein

GO Terms: GO:0006935, GO:0016021, GO:0000155

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1884

Tuberculist Genomic Region

DVU0964 Glu/Leu/Phe/Val dehydrogenase family protein

Details for DVU0964 - Glu/Leu/Phe/Val dehydrogenase family protein

GO Terms: GO:0019551, GO:0004352

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0964

Tuberculist Genomic Region

DVU1982 ATP-dependent RNA helicase RhlE

Details for DVU1982 - ATP-dependent RNA helicase RhlE

GO Terms: GO:0005524, GO:0004386, GO:0003676

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1982

Tuberculist Genomic Region

DVU1962 Methyl-accepting chemotaxis protein

Details for DVU1962 - Methyl-accepting chemotaxis protein

GO Terms: GO:0016021, GO:0004871

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1962

Tuberculist Genomic Region

Displaying 1 - 14 of 14

Motifs

Motif 1: e-value: 1400 e-value: 17000

Module Plots

Regulation

Regulator Interaction Influence Weight Other Influences

DVU0539

Sigma-54 dependent DNA-binding response regulator
 up-regulates 0.11

DVU0539

DVU1063

Transcriptional regulatory protein
 up-regulates 0.16

DVU1063

DVU1561

Molybdenum-binding protein, HTH domain
 up-regulates 0.15

DVU1561

DVU3142

Sigma-54 dependent transcriptional regulator
 up-regulates 0.15

DVU3142

GO Enrichment

Category: BP
Category GO ID GO Term Annotated Expected Significant p-value
BP GO:0006536 glutamate metabolic process 4 0.03 1 0.0323
BP GO:0043648 dicarboxylic acid metabolic process 4 0.03 1 0.0323
BP GO:0009063 cellular amino acid catabolic process 6 0.05 1 0.0481
BP GO:0016054 organic acid catabolic process 6 0.05 1 0.0481
BP GO:0044282 small molecule catabolic process 6 0.05 1 0.0481
BP GO:0046395 carboxylic acid catabolic process 6 0.05 1 0.0481
BP GO:1901606 alpha-amino acid catabolic process 6 0.05 1 0.0481
Category: MF
Category GO ID GO Term Annotated Expected Significant p-value
MF GO:0008773 [protein-PII] uridylyltransferase activi... 3 0.01 1 0.0140
MF GO:0070569 uridylyltransferase activity 3 0.01 1 0.0140
MF GO:0016779 nucleotidyltransferase activity 6 0.03 1 0.0280

Comments

Log in to post comments