Desulfovibrio vulgaris Hildenborough Module 56 Residual: 0.48 | Syntrophy Portal

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Summary

Residual: 0.48 Score: -42.552 version: dvh_cmonkey_11_Mar_02

Members

DVU0153 Uncharacterized protein Details for DVU0153 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0153 Tuberculist Genomic Region	DVU2300 Uncharacterized protein Details for DVU2300 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2300 Tuberculist Genomic Region
DVU0157 Thiamine-monophosphate kinase Details for DVU0157 - Thiamine-monophosphate kinase GO Terms: GO:0005524, GO:0000287, GO:0009228, GO:0009229, GO:0009030 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0157 Tuberculist Genomic Region	DVU2340 Amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family Details for DVU2340 - Amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family GO Terms: GO:0016021, GO:0005886, GO:0005215 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2340 Tuberculist Genomic Region
DVU0792 Conserved domain protein Details for DVU0792 - Conserved domain protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0792 Tuberculist Genomic Region	DVU3054 Radical SAM domain protein Details for DVU3054 - Radical SAM domain protein GO Terms: GO:0003824, GO:0051536 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU3054 Tuberculist Genomic Region
DVU0879 Uncharacterized protein Details for DVU0879 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0879 Tuberculist Genomic Region	DVU3149 Signal peptide peptidase SppA, 36K type Details for DVU3149 - Signal peptide peptidase SppA, 36K type GO Terms: GO:0004252 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU3149 Tuberculist Genomic Region
DVU0880 Uncharacterized protein Details for DVU0880 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0880 Tuberculist Genomic Region	DVU3150 Ribosomal protein S1 Details for DVU3150 - Ribosomal protein S1 GO Terms: GO:0003723, GO:0005840, GO:0003735, GO:0006412 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU3150 Tuberculist Genomic Region
DVU0886 Thioesterase family protein Details for DVU0886 - Thioesterase family protein GO Terms: GO:0016787 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0886 Tuberculist Genomic Region	DVU3186 Uncharacterized protein Details for DVU3186 - Uncharacterized protein GO Terms: GO:0003677, GO:0006355 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU3186 Tuberculist Genomic Region
DVU1407 Radical SAM domain protein Details for DVU1407 - Radical SAM domain protein GO Terms: GO:0003824, GO:0051536 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1407 Tuberculist Genomic Region	DVU0054 Dihydrouridine synthase family protein Details for DVU0054 - Dihydrouridine synthase family protein GO Terms: GO:0050660, GO:0017150 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0054 Tuberculist Genomic Region
DVU1409 Uncharacterized protein Details for DVU1409 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1409 Tuberculist Genomic Region	DVU0502 Uncharacterized protein Details for DVU0502 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0502 Tuberculist Genomic Region
DVU1663 Permease, putative Details for DVU1663 - Permease, putative GO Terms: GO:0016021 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1663 Tuberculist Genomic Region	DVU1087 Uncharacterized protein Details for DVU1087 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1087 Tuberculist Genomic Region
DVU1664 Probable GTP-binding protein EngB Details for DVU1664 - Probable GTP-binding protein EngB GO Terms: GO:0005525, GO:0003924, GO:0000917, GO:0000287 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1664 Tuberculist Genomic Region	DVU1576 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase Details for DVU1576 - 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase GO Terms: GO:0050515, GO:0005524, GO:0019288, GO:0016114 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1576 Tuberculist Genomic Region
DVU1665 3-dehydroquinate dehydratase Details for DVU1665 - 3-dehydroquinate dehydratase GO Terms: GO:0003855, GO:0009073, GO:0009423 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1665 Tuberculist Genomic Region	DVU1666 Elongation factor P Details for DVU1666 - Elongation factor P GO Terms: GO:0005737, GO:0043043, GO:0003746 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1666 Tuberculist Genomic Region
DVU1954 Probable nicotinate-nucleotide adenylyltransferase Details for DVU1954 - Probable nicotinate-nucleotide adenylyltransferase GO Terms: GO:0005524, GO:0009435, GO:0004515 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1954 Tuberculist Genomic Region

Motifs

Motif 1:

e-value: 0.000000029 Motif 2:

e-value: 0.000062

Module Median Expression Profiles

Module Plots

Regulation

Regulator	Interaction	Influence Weight	Other Influences
DVU0539 Sigma-54 dependent DNA-binding response regulator	down-regulates	-0.12	DVU0539
DVU1547 Sensory box protein	down-regulates	-0.10	DVU1547
DVU1949 Nif-specific regulatory protein	up-regulates	0.14	DVU1949
DVU3255 Transcriptional regulator, CopG family	up-regulates	0.15	DVU3255

GO Enrichment

Category: MF
Category	GO ID	GO Term	Annotated	Expected	Significant	p-value
MF	GO:0004252	serine-type endopeptidase activity	3	0.03	1	0.0279
MF	GO:0008236	serine-type peptidase activity	5	0.05	1	0.0460
MF	GO:0017171	serine hydrolase activity	5	0.05	1	0.0460

Essentiality

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