Desulfovibrio vulgaris Hildenborough Module 164 Residual: 0.38 | Syntrophy Portal

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Summary

Residual: 0.38 Score: -67.082 version: dvh_cmonkey_11_Mar_02

Members

DVU0074 Polysaccharide biosynthesis domain protein Details for DVU0074 - Polysaccharide biosynthesis domain protein GO Terms: GO:0008830, GO:0009103 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0074 Tuberculist Genomic Region	DVU0321 Type III pantothenate kinase Details for DVU0321 - Type III pantothenate kinase GO Terms: GO:0005524, GO:0015937, GO:0005737, GO:0046872, GO:0004594 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0321 Tuberculist Genomic Region
DVU0657 Heat shock protein, Hsp20 family Details for DVU0657 - Heat shock protein, Hsp20 family GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0657 Tuberculist Genomic Region	DVU0792 Conserved domain protein Details for DVU0792 - Conserved domain protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0792 Tuberculist Genomic Region
DVU2227 Uncharacterized protein Details for DVU2227 - Uncharacterized protein GO Terms: GO:0035438 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2227 Tuberculist Genomic Region	DVU0793 Uncharacterized protein Details for DVU0793 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0793 Tuberculist Genomic Region
DVU2323 Uncharacterized protein Details for DVU2323 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2323 Tuberculist Genomic Region	DVU1041 Sec-independent protein translocase protein TatC Details for DVU1041 - Sec-independent protein translocase protein TatC GO Terms: GO:0033281, GO:0005887, GO:0008320, GO:0043953 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1041 Tuberculist Genomic Region
DVU3174 Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE Details for DVU3174 - Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE GO Terms: GO:0008425, GO:0009060, GO:0009234, GO:0006744 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU3174 Tuberculist Genomic Region	DVU1242 VacJ lipoprotein, putative Details for DVU1242 - VacJ lipoprotein, putative GO Terms: GO:0016020 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1242 Tuberculist Genomic Region
DVU0153 Uncharacterized protein Details for DVU0153 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0153 Tuberculist Genomic Region	DVU1407 Radical SAM domain protein Details for DVU1407 - Radical SAM domain protein GO Terms: GO:0003824, GO:0051536 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1407 Tuberculist Genomic Region
DVU0157 Thiamine-monophosphate kinase Details for DVU0157 - Thiamine-monophosphate kinase GO Terms: GO:0005524, GO:0000287, GO:0009228, GO:0009229, GO:0009030 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0157 Tuberculist Genomic Region	DVU3186 Uncharacterized protein Details for DVU3186 - Uncharacterized protein GO Terms: GO:0003677, GO:0006355 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU3186 Tuberculist Genomic Region

Motifs

Motif 1:

e-value: 2300 Motif 2:

e-value: 4000

Module Median Expression Profiles

Module Plots

Regulation

Regulator	Interaction	Influence Weight	Other Influences
DVU1730 DNA-binding protein	down-regulates	-0.13	DVU1730
DVU2567 Uncharacterized protein	down-regulates	-0.13	DVU2567
DVU2799 Transcriptional regulator, MarR family	up-regulates	0.12	DVU2799
DVU2953 Transcriptional regulator, GntR family	down-regulates	-0.12	DVU2953

GO Enrichment

Category: CC
Category	GO ID	GO Term	Annotated	Expected	Significant	p-value
CC	GO:0033281	TAT protein transport complex	4	0.02	1	0.0200
CC	GO:0043234	protein complex	10	0.05	1	0.0500

Category: MF
Category	GO ID	GO Term	Annotated	Expected	Significant	p-value
MF	GO:0016854	racemase and epimerase activity	3	0.02	1	0.0163
MF	GO:0016857	racemase and epimerase activity, acting ...	3	0.02	1	0.0163
MF	GO:0030551	cyclic nucleotide binding	5	0.03	1	0.0271
MF	GO:0035438	cyclic-di-GMP binding	5	0.03	1	0.0271

Essentiality

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